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4LXU
Biol. Unit 1
Info
Asym.Unit (124 KB)
Biol.Unit 1 (117 KB)
Biol.Unit 2 (61 KB)
Biol.Unit 3 (60 KB)
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(1)
Title
:
DTDP-FUC3N AND 5-N-FORMYL-THF
Authors
:
J. B. Thoden, M. -F. Goneau, M. Gilbert, H. M. Holden
Date
:
30 Jul 13 (Deposition) - 14 Aug 13 (Release) - 05 Feb 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.40
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Biol. Unit 2: A (1x)
Biol. Unit 3: B (1x)
Keywords
:
Fmt, Formyltransferase, N-10-Formyl-Thf, Formylation, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. B. Thoden, M. F. Goneau, M. Gilbert, H. M. Holden
Structure Of A Sugar N-Formyltransferase From Campylobacter Jejuni.
Biochemistry V. 52 6114 2013
[
close entry info
]
Hetero Components
(5, 17)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
1b: CHLORIDE ION (CLb)
2a: 1,2-ETHANEDIOL (EDOa)
2b: 1,2-ETHANEDIOL (EDOb)
2c: 1,2-ETHANEDIOL (EDOc)
2d: 1,2-ETHANEDIOL (EDOd)
2e: 1,2-ETHANEDIOL (EDOe)
2f: 1,2-ETHANEDIOL (EDOf)
2g: 1,2-ETHANEDIOL (EDOg)
2h: 1,2-ETHANEDIOL (EDOh)
2i: 1,2-ETHANEDIOL (EDOi)
2j: 1,2-ETHANEDIOL (EDOj)
3a: N-{[4-({[(6R)-2-AMINO-5-FORMYL-4-O... (FONa)
3b: N-{[4-({[(6R)-2-AMINO-5-FORMYL-4-O... (FONb)
4a: 3[N-MORPHOLINO]PROPANE SULFONIC AC... (MPOa)
4b: 3[N-MORPHOLINO]PROPANE SULFONIC AC... (MPOb)
5a: SULFATE ION (SO4a)
6a: (3R,4S,5R,6R)-4-AMINO-3,5-DIHYDROX... (T3Fa)
6b: (3R,4S,5R,6R)-4-AMINO-3,5-DIHYDROX... (T3Fb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CL
-1
Ligand/Ion
CHLORIDE ION
2
EDO
10
Ligand/Ion
1,2-ETHANEDIOL
3
FON
2
Ligand/Ion
N-{[4-({[(6R)-2-AMINO-5-FORMYL-4-OXO-1,4,5,6,7,8-HEXAHYDROPTERIDIN-6-YL]METHYL}AMINO)PHENYL]CARBONYL}-L-GLUTAMIC ACID
4
MPO
2
Ligand/Ion
3[N-MORPHOLINO]PROPANE SULFONIC ACID
5
SO4
1
Ligand/Ion
SULFATE ION
6
T3F
2
Ligand/Ion
(3R,4S,5R,6R)-4-AMINO-3,5-DIHYDROXY-6-METHYLOXAN-2-YL][HYDROXY-[[(2R,3S,5R)-3-HYDROXY-5-(5-METHYL-2,4-DIOXOPYRIMIDIN-1-YL)OXOLAN-2-YL]METHOXY]PHOSPHORYL]HYDROGEN PHOSPHATE
[
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Sites
(19, 19)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
SER A:75 , PHE A:78 , ASP A:79 , GLN A:80 , ILE A:81 , ILE A:82 , ASN A:94 , VAL A:106 , ILE A:127 , ASP A:128 , GLY A:130 , ASP A:132 , SER A:191 , ARG A:192 , T3F A:303 , HOH A:406 , HOH A:417 , HOH A:428 , HOH A:461 , HOH A:491 , HOH A:741 , HOH A:797 , EDO B:304
BINDING SITE FOR RESIDUE FON A 301
02
AC2
SOFTWARE
PHE A:203 , ILE A:227 , ASN A:228 , PHE A:247 , HOH A:504 , HOH A:592 , HOH A:765 , HOH A:808
BINDING SITE FOR RESIDUE MPO A 302
03
AC3
SOFTWARE
LYS A:9 , GLU A:77 , PHE A:78 , GLY A:105 , PHE A:107 , THR A:108 , SER A:109 , TYR A:154 , ARG A:192 , LEU A:197 , PHE A:219 , TYR A:222 , GLN A:223 , FON A:301 , HOH A:402 , HOH A:411 , HOH A:413 , HOH A:460 , HOH A:484 , HOH A:487 , HOH A:599 , HOH A:665 , HOH A:749
BINDING SITE FOR RESIDUE T3F A 303
04
AC4
SOFTWARE
LYS A:204 , ASN A:245 , ILE A:259 , HOH A:481 , FON B:301
BINDING SITE FOR RESIDUE EDO A 304
05
AC5
SOFTWARE
ASP A:90 , ARG A:126 , ASN A:175 , TYR A:177 , HOH A:812
BINDING SITE FOR RESIDUE EDO A 305
06
AC6
SOFTWARE
ILE A:84 , ARG A:126 , ILE A:127 , ASP A:128 , HOH A:445 , HOH A:630 , HOH A:872
BINDING SITE FOR RESIDUE EDO A 306
07
AC7
SOFTWARE
ASP A:38 , LYS A:39 , ILE A:41 , GLN A:45 , HOH A:473 , HOH A:662 , HOH A:739 , HOH A:755
BINDING SITE FOR RESIDUE EDO A 307
08
AC8
SOFTWARE
ASP A:194 , ILE A:195 , ASN A:196 , HIS A:199 , HOH A:488 , HOH A:791 , HOH A:802 , HOH A:836
BINDING SITE FOR RESIDUE EDO A 308
09
AC9
SOFTWARE
GLN A:70 , LYS A:88
BINDING SITE FOR RESIDUE CL A 309
10
BC1
SOFTWARE
LYS A:9 , ASN A:35 , ASN A:37 , HOH A:806
BINDING SITE FOR RESIDUE CL A 310
11
BC2
SOFTWARE
ASN A:175 , TYR A:177
BINDING SITE FOR RESIDUE SO4 A 311
12
BC3
SOFTWARE
EDO A:304 , SER B:75 , PHE B:78 , GLN B:80 , ILE B:81 , ILE B:82 , ASN B:94 , VAL B:106 , ILE B:127 , ASP B:128 , GLY B:130 , ASP B:132 , SER B:191 , ARG B:192 , T3F B:303 , HOH B:433 , HOH B:436 , HOH B:459 , HOH B:466 , HOH B:685
BINDING SITE FOR RESIDUE FON B 301
13
BC4
SOFTWARE
PHE B:203 , ILE B:227 , ASN B:228 , PHE B:247 , HOH B:472 , HOH B:485 , HOH B:549 , HOH B:664
BINDING SITE FOR RESIDUE MPO B 302
14
BC5
SOFTWARE
LYS B:9 , GLU B:77 , PHE B:78 , GLY B:105 , PHE B:107 , THR B:108 , SER B:109 , TYR B:154 , ARG B:192 , LEU B:197 , PHE B:219 , TYR B:222 , GLN B:223 , FON B:301 , HOH B:401 , HOH B:414 , HOH B:440 , HOH B:454 , HOH B:501 , HOH B:503 , HOH B:566 , HOH B:597 , HOH B:655 , HOH B:666
BINDING SITE FOR RESIDUE T3F B 303
15
BC6
SOFTWARE
FON A:301 , LYS B:204 , ASN B:245 , ILE B:259 , HOH B:412
BINDING SITE FOR RESIDUE EDO B 304
16
BC7
SOFTWARE
ASN A:115 , ASN A:116 , TYR B:103 , SER B:188 , HOH B:471
BINDING SITE FOR RESIDUE EDO B 305
17
BC8
SOFTWARE
TRP B:44 , ARG B:151 , LEU B:269 , LYS B:271 , HOH B:613
BINDING SITE FOR RESIDUE EDO B 306
18
BC9
SOFTWARE
ASN B:11 , ASN B:15 , LYS B:46 , ASP B:63 , ASN B:252 , ASN B:270
BINDING SITE FOR RESIDUE EDO B 307
19
CC1
SOFTWARE
ASP B:194 , ILE B:195 , ASN B:196 , HIS B:199 , HOH B:476 , HOH B:603 , HOH B:783
BINDING SITE FOR RESIDUE EDO B 308
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(, 0)
Info
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(0, 0)
Info
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CATH Domains
(0, 0)
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Sorry, no Info available
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Pfam Domains
(0, 0)
Info
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Sorry, no Info available
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Asymmetric Unit 1
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select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
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Show PDB file:
Asym.Unit (124 KB)
Header - Asym.Unit
Biol.Unit 1 (117 KB)
Header - Biol.Unit 1
Biol.Unit 2 (61 KB)
Header - Biol.Unit 2
Biol.Unit 3 (60 KB)
Header - Biol.Unit 3
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