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Asym. Unit
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Asym.Unit (125 KB)
Biol.Unit 1 (118 KB)
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(1)
Title
:
CRYSTAL STRUCTURE WLARD, A SUGAR 3N-FORMYL TRANSFERASE IN THE PRESENCE OF DTDP-QUI3N AND 5-N-FORMYL-THF
Authors
:
J. B. Thoden, M. -F. Goneau, M. Gilbert, H. M. Holden
Date
:
30 Jul 13 (Deposition) - 14 Aug 13 (Release) - 05 Feb 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.40
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Formyltransferase, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. B. Thoden, M. F. Goneau, M. Gilbert, H. M. Holden
Structure Of A Sugar N-Formyltransferase From Campylobacter Jejuni.
Biochemistry V. 52 6114 2013
[
close entry info
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Hetero Components
(5, 16)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
1b: CHLORIDE ION (CLb)
2a: 1,2-ETHANEDIOL (EDOa)
2b: 1,2-ETHANEDIOL (EDOb)
2c: 1,2-ETHANEDIOL (EDOc)
2d: 1,2-ETHANEDIOL (EDOd)
2e: 1,2-ETHANEDIOL (EDOe)
2f: 1,2-ETHANEDIOL (EDOf)
3a: N-{[4-({[(6R)-2-AMINO-5-FORMYL-4-O... (FONa)
3b: N-{[4-({[(6R)-2-AMINO-5-FORMYL-4-O... (FONb)
4a: 3[N-MORPHOLINO]PROPANE SULFONIC AC... (MPOa)
4b: 3[N-MORPHOLINO]PROPANE SULFONIC AC... (MPOb)
4c: 3[N-MORPHOLINO]PROPANE SULFONIC AC... (MPOc)
4d: 3[N-MORPHOLINO]PROPANE SULFONIC AC... (MPOd)
5a: [(3R,4S,5S,6R)-4-AMINO-3,5-DIHYDRO... (T3Qa)
5b: [(3R,4S,5S,6R)-4-AMINO-3,5-DIHYDRO... (T3Qb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CL
2
Ligand/Ion
CHLORIDE ION
2
EDO
6
Ligand/Ion
1,2-ETHANEDIOL
3
FON
2
Ligand/Ion
N-{[4-({[(6R)-2-AMINO-5-FORMYL-4-OXO-1,4,5,6,7,8-HEXAHYDROPTERIDIN-6-YL]METHYL}AMINO)PHENYL]CARBONYL}-L-GLUTAMIC ACID
4
MPO
4
Ligand/Ion
3[N-MORPHOLINO]PROPANE SULFONIC ACID
5
T3Q
2
Ligand/Ion
[(3R,4S,5S,6R)-4-AMINO-3,5-DIHYDROXY-6-METHYLOXAN-2-YL][HYDROXY-[[(2R,3S,5R)-3-HYDROXY-5-(5-METHYL-2,4-DIOXOPYRIMIDIN-1-YL)OXOLAN-2-YL]METHOXY]PHOSPHORYL]HYDROGEN PHOSPHATE
[
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]
Sites
(16, 16)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
SER A:75 , PHE A:78 , GLN A:80 , ILE A:81 , ILE A:82 , ASN A:94 , VAL A:106 , ILE A:127 , ASP A:128 , GLY A:130 , ASP A:132 , SER A:191 , ARG A:192 , T3Q A:305 , HOH A:407 , HOH A:412 , HOH A:426 , HOH A:456 , HOH A:621 , HOH A:762 , HOH A:793 , HOH A:821 , EDO B:304
BINDING SITE FOR RESIDUE FON A 301
02
AC2
SOFTWARE
PHE A:203 , ILE A:227 , ASN A:228 , PHE A:247 , HOH A:527 , HOH A:615 , HOH A:651 , HOH A:713
BINDING SITE FOR RESIDUE MPO A 302
03
AC3
SOFTWARE
ILE A:84 , ASP A:128 , ASN A:129 , ASN A:135 , HOH A:453 , HOH A:610 , HOH A:675 , HOH A:726 , HOH A:806 , PHE B:241 , TYR B:244
BINDING SITE FOR RESIDUE MPO A 303
04
AC4
SOFTWARE
PHE A:241 , TYR A:244 , HOH A:544 , HOH A:602 , HOH A:641 , HOH A:728 , HOH A:907 , ILE B:84 , ASP B:128 , ASN B:129 , ASN B:135 , HOH B:499
BINDING SITE FOR RESIDUE MPO A 304
05
AC5
SOFTWARE
LYS A:9 , GLU A:77 , PHE A:78 , GLY A:105 , VAL A:106 , PHE A:107 , THR A:108 , SER A:109 , TYR A:154 , LEU A:197 , PHE A:219 , TYR A:222 , GLN A:223 , FON A:301 , HOH A:406 , HOH A:422 , HOH A:424 , HOH A:428 , HOH A:433 , HOH A:465 , HOH A:472 , HOH A:487 , HOH A:502 , HOH A:503 , HOH A:599
BINDING SITE FOR RESIDUE T3Q A 305
06
AC6
SOFTWARE
LYS A:204 , ASN A:245 , ILE A:259 , HOH A:451 , FON B:301
BINDING SITE FOR RESIDUE EDO A 306
07
AC7
SOFTWARE
ASN A:37 , ASP A:38 , LYS A:39 , ILE A:41 , GLN A:45 , HOH A:535 , HOH A:608 , HOH A:626 , HOH A:687
BINDING SITE FOR RESIDUE EDO A 307
08
AC8
SOFTWARE
ASP A:194 , ASN A:196 , HIS A:199 , HOH A:501 , HOH A:758 , HOH A:765 , HOH A:776
BINDING SITE FOR RESIDUE EDO A 308
09
AC9
SOFTWARE
LYS A:9 , ASN A:35 , ASN A:37
BINDING SITE FOR RESIDUE CL A 309
10
BC1
SOFTWARE
EDO A:306 , SER B:75 , PHE B:78 , ASP B:79 , GLN B:80 , ILE B:81 , ILE B:82 , ASN B:94 , ILE B:127 , ASP B:128 , GLY B:130 , ASP B:132 , SER B:191 , ARG B:192 , T3Q B:303 , HOH B:419 , HOH B:428 , HOH B:430 , HOH B:436 , HOH B:632 , HOH B:644 , HOH B:664 , HOH B:715
BINDING SITE FOR RESIDUE FON B 301
11
BC2
SOFTWARE
PHE B:203 , ILE B:227 , ASN B:228 , PHE B:247 , HOH B:484 , HOH B:516 , HOH B:597 , HOH B:614
BINDING SITE FOR RESIDUE MPO B 302
12
BC3
SOFTWARE
LYS B:9 , GLU B:77 , PHE B:78 , GLY B:105 , PHE B:107 , THR B:108 , SER B:109 , TYR B:154 , LEU B:197 , PHE B:219 , TYR B:222 , GLN B:223 , FON B:301 , HOH B:404 , HOH B:409 , HOH B:412 , HOH B:448 , HOH B:453 , HOH B:454 , HOH B:479 , HOH B:482 , HOH B:510 , HOH B:520 , HOH B:542 , HOH B:559
BINDING SITE FOR RESIDUE T3Q B 303
13
BC4
SOFTWARE
ILE A:131 , FON A:301 , LYS B:204 , ASN B:245 , ILE B:259 , HOH B:413
BINDING SITE FOR RESIDUE EDO B 304
14
BC5
SOFTWARE
TRP B:44 , ARG B:151 , PHE B:155 , LEU B:269 , ASN B:270 , LYS B:271 , LEU B:272 , HOH B:467 , HOH B:550
BINDING SITE FOR RESIDUE EDO B 305
15
BC6
SOFTWARE
LYS B:9 , ASN B:35 , ASN B:37
BINDING SITE FOR RESIDUE CL B 306
16
BC7
SOFTWARE
ASN A:115 , ASN A:116 , HOH A:774 , TYR B:103 , SER B:188 , HOH B:445
BINDING SITE FOR RESIDUE EDO B 307
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
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CATH Domains
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Sorry, no Info available
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Pfam Domains
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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set fontsize 20
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