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4LXQ
Asym. Unit
Info
Asym.Unit (126 KB)
Biol.Unit 1 (120 KB)
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(1)
Title
:
CRYSTAL STRUCTURE WLARD, A SUGAR 3N-FORMYL TRANSFERASE IN THE PRESENCE OF DTDP AND 5-N-FORMYL-THF
Authors
:
J. B. Thoden, M. -F. Goneau, M. Gilbert, H. M. Holden
Date
:
30 Jul 13 (Deposition) - 14 Aug 13 (Release) - 05 Feb 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.40
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Formyl Transferase, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. B. Thoden, M. F. Goneau, M. Gilbert, H. M. Holden
Structure Of A Sugar N-Formyltransferase From Campylobacter Jejuni.
Biochemistry V. 52 6114 2013
[
close entry info
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Hetero Components
(5, 26)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
1b: CHLORIDE ION (CLb)
1c: CHLORIDE ION (CLc)
1d: CHLORIDE ION (CLd)
1e: CHLORIDE ION (CLe)
1f: CHLORIDE ION (CLf)
1g: CHLORIDE ION (CLg)
2a: 1,2-ETHANEDIOL (EDOa)
2b: 1,2-ETHANEDIOL (EDOb)
2c: 1,2-ETHANEDIOL (EDOc)
2d: 1,2-ETHANEDIOL (EDOd)
2e: 1,2-ETHANEDIOL (EDOe)
2f: 1,2-ETHANEDIOL (EDOf)
2g: 1,2-ETHANEDIOL (EDOg)
2h: 1,2-ETHANEDIOL (EDOh)
2i: 1,2-ETHANEDIOL (EDOi)
2j: 1,2-ETHANEDIOL (EDOj)
2k: 1,2-ETHANEDIOL (EDOk)
3a: N-{[4-({[(6R)-2-AMINO-5-FORMYL-4-O... (FONa)
3b: N-{[4-({[(6R)-2-AMINO-5-FORMYL-4-O... (FONb)
4a: 3[N-MORPHOLINO]PROPANE SULFONIC AC... (MPOa)
4b: 3[N-MORPHOLINO]PROPANE SULFONIC AC... (MPOb)
4c: 3[N-MORPHOLINO]PROPANE SULFONIC AC... (MPOc)
4d: 3[N-MORPHOLINO]PROPANE SULFONIC AC... (MPOd)
5a: THYMIDINE-5'-DIPHOSPHATE (TYDa)
5b: THYMIDINE-5'-DIPHOSPHATE (TYDb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CL
7
Ligand/Ion
CHLORIDE ION
2
EDO
11
Ligand/Ion
1,2-ETHANEDIOL
3
FON
2
Ligand/Ion
N-{[4-({[(6R)-2-AMINO-5-FORMYL-4-OXO-1,4,5,6,7,8-HEXAHYDROPTERIDIN-6-YL]METHYL}AMINO)PHENYL]CARBONYL}-L-GLUTAMIC ACID
4
MPO
4
Ligand/Ion
3[N-MORPHOLINO]PROPANE SULFONIC ACID
5
TYD
2
Ligand/Ion
THYMIDINE-5'-DIPHOSPHATE
[
close Hetero Component info
]
Sites
(26, 26)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
SER A:75 , PHE A:78 , GLN A:80 , ILE A:81 , ILE A:82 , ASN A:94 , ILE A:127 , ASP A:128 , GLY A:130 , ASP A:132 , SER A:191 , ARG A:192 , HOH A:410 , HOH A:485 , HOH A:571 , HOH A:730 , HOH A:767 , HOH A:796 , EDO B:308
BINDING SITE FOR RESIDUE FON A 301
02
AC2
SOFTWARE
LYS A:9 , VAL A:106 , PHE A:107 , THR A:108 , SER A:109 , TYR A:154 , ARG A:192 , LEU A:197 , PHE A:219 , TYR A:222 , GLN A:223 , HOH A:406 , HOH A:441 , HOH A:580 , HOH A:605 , HOH A:638 , HOH A:749 , HOH A:810 , HOH A:870
BINDING SITE FOR RESIDUE TYD A 302
03
AC3
SOFTWARE
PHE A:203 , ILE A:227 , ASN A:228 , PHE A:247 , HOH A:513 , HOH A:559 , HOH A:633 , HOH A:854
BINDING SITE FOR RESIDUE MPO A 303
04
AC4
SOFTWARE
ASN A:10 , SER A:43 , TRP A:44 , EDO A:307 , HOH A:486 , HOH A:534 , HOH A:644
BINDING SITE FOR RESIDUE EDO A 304
05
AC5
SOFTWARE
ASP A:138 , LYS A:167 , ASN A:168 , HOH A:640
BINDING SITE FOR RESIDUE EDO A 305
06
AC6
SOFTWARE
ILE A:84 , ASP A:128 , ASN A:129 , ASN A:135 , LYS A:181 , HOH A:471 , HOH A:558 , HOH A:768 , HOH A:804 , HOH A:876 , PHE B:241 , TYR B:244 , HOH B:645
BINDING SITE FOR RESIDUE MPO A 306
07
AC7
SOFTWARE
TRP A:44 , TYR A:222 , EDO A:304 , HOH A:745
BINDING SITE FOR RESIDUE EDO A 307
08
AC8
SOFTWARE
GLN A:182 , THR A:183
BINDING SITE FOR RESIDUE CL A 308
09
AC9
SOFTWARE
TYR A:66 , ILE A:82 , LYS A:83 , ASN A:86 , HOH A:684
BINDING SITE FOR RESIDUE CL A 309
10
BC1
SOFTWARE
ARG A:126 , ASN A:135 , HOH A:542 , HOH A:558 , HOH A:789
BINDING SITE FOR RESIDUE CL A 310
11
BC2
SOFTWARE
LYS A:83 , GLU A:251
BINDING SITE FOR RESIDUE CL A 311
12
BC3
SOFTWARE
SER B:75 , PHE B:78 , ASP B:79 , GLN B:80 , ILE B:81 , ILE B:82 , ASN B:94 , ILE B:127 , ASP B:128 , GLY B:130 , ASP B:132 , SER B:191 , ARG B:192 , HOH B:434 , HOH B:469 , HOH B:548 , HOH B:810 , HOH B:881 , HOH B:897
BINDING SITE FOR RESIDUE FON B 301
13
BC4
SOFTWARE
LYS B:9 , VAL B:106 , PHE B:107 , THR B:108 , SER B:109 , TYR B:154 , ARG B:192 , LEU B:197 , PHE B:219 , TYR B:222 , GLN B:223 , HOH B:402 , HOH B:409 , HOH B:470 , HOH B:607 , HOH B:611 , HOH B:651 , HOH B:733 , HOH B:762 , HOH B:775
BINDING SITE FOR RESIDUE TYD B 302
14
BC5
SOFTWARE
PHE B:203 , ILE B:227 , ASN B:228 , PHE B:247 , HOH B:453 , HOH B:487 , HOH B:494 , HOH B:869
BINDING SITE FOR RESIDUE MPO B 303
15
BC6
SOFTWARE
TYR A:244 , ILE B:84 , ASP B:128 , ASN B:129 , ASN B:135 , LYS B:181 , HOH B:483 , HOH B:520 , HOH B:664 , HOH B:785 , HOH B:814
BINDING SITE FOR RESIDUE MPO B 304
16
BC7
SOFTWARE
ASN B:147 , LYS B:234 , ILE B:236 , HOH B:654 , HOH B:782
BINDING SITE FOR RESIDUE EDO B 305
17
BC8
SOFTWARE
ASN B:11 , ASN B:15 , LYS B:46 , ASP B:63 , ASN B:252 , ASN B:270
BINDING SITE FOR RESIDUE EDO B 306
18
BC9
SOFTWARE
ILE B:137 , ASP B:138 , GLN B:139 , HOH B:492 , HOH B:667 , HOH B:760
BINDING SITE FOR RESIDUE EDO B 307
19
CC1
SOFTWARE
FON A:301 , ASN B:245 , ILE B:259 , HOH B:801
BINDING SITE FOR RESIDUE EDO B 308
20
CC2
SOFTWARE
GLN B:182 , THR B:183 , HOH B:502 , HOH B:646
BINDING SITE FOR RESIDUE CL B 309
21
CC3
SOFTWARE
ARG B:126 , ASN B:135 , HOH B:520 , HOH B:579 , HOH B:889
BINDING SITE FOR RESIDUE CL B 310
22
CC4
SOFTWARE
LEU B:62 , GLN B:80 , HOH B:545
BINDING SITE FOR RESIDUE CL B 311
23
CC5
SOFTWARE
ASP B:138 , LYS B:167 , ASN B:168 , HOH B:586 , HOH B:864
BINDING SITE FOR RESIDUE EDO B 312
24
CC6
SOFTWARE
TRP B:44 , ARG B:151 , PHE B:155 , LEU B:269 , ASN B:270 , LYS B:271 , LEU B:272 , HOH B:452 , HOH B:755
BINDING SITE FOR RESIDUE EDO B 313
25
CC7
SOFTWARE
ILE A:242 , GLY A:243 , HOH A:705 , ILE B:242 , GLY B:243 , EDO B:315 , HOH B:712 , HOH B:714 , HOH B:722
BINDING SITE FOR RESIDUE EDO B 314
26
CC8
SOFTWARE
ILE A:242 , HOH A:518 , HOH A:754 , ILE B:242 , GLY B:243 , EDO B:314 , HOH B:645 , HOH B:712
BINDING SITE FOR RESIDUE EDO B 315
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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PROSITE Patterns/Profiles
(0, 0)
Info
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;
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Exons
(0, 0)
Info
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
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Sorry, no Info available
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CATH Domains
(0, 0)
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all CATH domains
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Sorry, no Info available
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Pfam Domains
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Sorry, no Info available
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Atom Selection
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Asymmetric Unit 1
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select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
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