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4LSR
Asym. Unit
Info
Asym.Unit (273 KB)
Biol.Unit 1 (265 KB)
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Title
:
CRYSTAL STRUCTURE OF BROADLY AND POTENTLY NEUTRALIZING ANTIBODY VRC-CH31 IN COMPLEX WITH HIV-1 CLADE A/E STRAN 93TH057 GP120 WITH LOOP D AND LOOP V5 FROM CLADE A STRAIN KER_2018_11
Authors
:
T. Zhou, S. Moquin, P. D. Kwong
Date
:
23 Jul 13 (Deposition) - 21 Aug 13 (Release) - 07 May 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.28
Chains
:
Asym. Unit : G,H,L
Biol. Unit 1: G,H,L (1x)
Keywords
:
Neutralizing Antibody Vrc-Ch31, Viral Protein-Immune System Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
T. Zhou, J. Zhu, X. Wu, S. Moquin, B. Zhang, P. Acharya, I. S. Georgiev, H. R. Altae-Tran, G. Y. Chuang, M. G. Joyce, Y. Do Kwon, N. S. Longo, M. K. Louder, T. Luongo, K. Mckee, C. A. Schramm, J. Skinner, Y. Yang, Z. Yang, Z. Zhang, A. Zheng, M. Bonsignori, B. F. Haynes, J. F. Scheid, M. C. Nussenzweig, M. Simek, D. R. Burton, W. C. Koff, J. C. Mullikin, M. Connors, L. Shapiro, G. J. Nabel, J. R. Mascola, P. D. Kwong
Multidonor Analysis Reveals Structural Elements, Genetic Determinants, And Maturation Pathway For Hiv-1 Neutralization By Vrc01-Class Antibodies.
Immunity V. 39 245 2013
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Hetero Components
(2, 14)
Info
All Hetero Components
1a: N-ACETYL-D-GLUCOSAMINE (NAGa)
1b: N-ACETYL-D-GLUCOSAMINE (NAGb)
1c: N-ACETYL-D-GLUCOSAMINE (NAGc)
1d: N-ACETYL-D-GLUCOSAMINE (NAGd)
1e: N-ACETYL-D-GLUCOSAMINE (NAGe)
1f: N-ACETYL-D-GLUCOSAMINE (NAGf)
1g: N-ACETYL-D-GLUCOSAMINE (NAGg)
1h: N-ACETYL-D-GLUCOSAMINE (NAGh)
1i: N-ACETYL-D-GLUCOSAMINE (NAGi)
2a: SULFATE ION (SO4a)
2b: SULFATE ION (SO4b)
2c: SULFATE ION (SO4c)
2d: SULFATE ION (SO4d)
2e: SULFATE ION (SO4e)
View:
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Label:
No.
Name
Count
Type
Full Name
1
NAG
9
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
2
SO4
5
Ligand/Ion
SULFATE ION
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Sites
(14, 14)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASN G:80 , LYS G:340 , GLN G:344 , NAG G:504
BINDING SITE FOR RESIDUE SO4 G 510
02
AC2
SOFTWARE
LYS G:59 , ALA G:60 , HIS G:61 , HOH G:685 , ASP H:72 , ARG H:73
BINDING SITE FOR RESIDUE SO4 G 511
03
AC3
SOFTWARE
TRP G:69 , SER G:110 , GLN G:114 , ARG G:327 , LYS G:419 , HOH G:698
BINDING SITE FOR RESIDUE SO4 G 512
04
AC4
SOFTWARE
ASN G:80 , GLN G:82 , LYS G:290 , LYS G:337 , NAG G:506
BINDING SITE FOR RESIDUE SO4 G 513
05
AC5
SOFTWARE
ALA H:10 , ARG H:12 , HOH H:436
BINDING SITE FOR RESIDUE SO4 H 301
06
AC6
SOFTWARE
ASN G:234 , SER G:274 , HIS G:352 , HOH G:717
BINDING SITE FOR MONO-SACCHARIDE NAG G 501 BOUND TO ASN G 234
07
AC7
SOFTWARE
LYS G:252 , LEU G:261 , ASN G:262 , ARG G:379 , CYS G:445 , VAL G:446 , SER G:447 , HOH G:618 , HOH G:630 , HOH G:636
BINDING SITE FOR MONO-SACCHARIDE NAG G 502 BOUND TO ASN G 262
08
AC8
SOFTWARE
GLU G:275 , ASN G:276 , SER G:278 , ILE L:29 , GLY L:30 , ASP L:32 , GLN L:90 , TYR L:91
BINDING SITE FOR MONO-SACCHARIDE NAG G 503 BOUND TO ASN G 276
09
AC9
SOFTWARE
GLU G:268 , GLU G:269 , ILE G:270 , ASN G:289 , LYS G:348 , SO4 G:510
BINDING SITE FOR MONO-SACCHARIDE NAG G 504 BOUND TO ASN G 289
10
BC1
SOFTWARE
ASN G:295 , THR G:297 , GLU G:332 , LYS G:442 , HOH G:643 , HOH G:738
BINDING SITE FOR MONO-SACCHARIDE NAG G 505 BOUND TO ASN G 295
11
BC2
SOFTWARE
GLU G:83 , HIS G:85 , ASN G:334 , THR G:336 , LYS G:337 , SO4 G:513
BINDING SITE FOR MONO-SACCHARIDE NAG G 506 BOUND TO ASN G 334
12
BC3
SOFTWARE
GLU G:347 , ASN G:355
BINDING SITE FOR MONO-SACCHARIDE NAG G 507 BOUND TO ASN G 355
13
BC4
SOFTWARE
ASN G:386 , THR G:388 , HOH G:687 , HOH G:740
BINDING SITE FOR MONO-SACCHARIDE NAG G 508 BOUND TO ASN G 386
14
BC5
SOFTWARE
THR G:388 , GLN G:389 , ASN G:392 , THR G:394
BINDING SITE FOR MONO-SACCHARIDE NAG G 509 BOUND TO ASN G 392
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
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CATH Domains
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all CATH domains
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Pfam Domains
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Asymmetric Unit 1
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select residue range 5 to 10 in all chains
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Asym.Unit (273 KB)
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Header - Biol.Unit 1
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