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4LSI
Asym. Unit
Info
Asym.Unit (180 KB)
Biol.Unit 1 (172 KB)
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(1)
Title
:
ION SELECTIVITY OF OMPF PORIN SOAKED IN 0.3M KBR
Authors
:
D. Balasundaresan, L. Blachowicz, B. Roux
Date
:
22 Jul 13 (Deposition) - 23 Oct 13 (Release) - 15 Jan 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.09
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A,B,C (1x)
Keywords
:
Porin, Outer Membrane Protein, Beta-Barrel, Ion Transport, Transport Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
B. Dhakshnamoorthy, B. K. Ziervogel, L. Blachowicz, B. Roux
A Structural Study Of Ion Permeation In Ompf Porin From Anomalous X-Ray Diffraction And Molecular Dynamics Simulations.
J. Am. Chem. Soc. V. 135 16561 2013
[
close entry info
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Hetero Components
(5, 34)
Info
All Hetero Components
1a: BROMIDE ION (BRa)
1b: BROMIDE ION (BRb)
1c: BROMIDE ION (BRc)
1d: BROMIDE ION (BRd)
1e: BROMIDE ION (BRe)
1f: BROMIDE ION (BRf)
1g: BROMIDE ION (BRg)
1h: BROMIDE ION (BRh)
1i: BROMIDE ION (BRi)
2a: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTA... (C8Ea)
2b: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTA... (C8Eb)
2c: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTA... (C8Ec)
2d: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTA... (C8Ed)
3a: GLYCEROL (GOLa)
3b: GLYCEROL (GOLb)
3c: GLYCEROL (GOLc)
3d: GLYCEROL (GOLd)
4a: MAGNESIUM ION (MGa)
4b: MAGNESIUM ION (MGb)
4c: MAGNESIUM ION (MGc)
4d: MAGNESIUM ION (MGd)
4e: MAGNESIUM ION (MGe)
4f: MAGNESIUM ION (MGf)
4g: MAGNESIUM ION (MGg)
4h: MAGNESIUM ION (MGh)
5a: DI(HYDROXYETHYL)ETHER (PEGa)
5b: DI(HYDROXYETHYL)ETHER (PEGb)
5c: DI(HYDROXYETHYL)ETHER (PEGc)
5d: DI(HYDROXYETHYL)ETHER (PEGd)
5e: DI(HYDROXYETHYL)ETHER (PEGe)
5f: DI(HYDROXYETHYL)ETHER (PEGf)
5g: DI(HYDROXYETHYL)ETHER (PEGg)
5h: DI(HYDROXYETHYL)ETHER (PEGh)
5i: DI(HYDROXYETHYL)ETHER (PEGi)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BR
9
Ligand/Ion
BROMIDE ION
2
C8E
4
Ligand/Ion
(HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE
3
GOL
4
Ligand/Ion
GLYCEROL
4
MG
8
Ligand/Ion
MAGNESIUM ION
5
PEG
9
Ligand/Ion
DI(HYDROXYETHYL)ETHER
[
close Hetero Component info
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Sites
(32, 32)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASP A:121 , HOH A:652
BINDING SITE FOR RESIDUE PEG A 401
02
AC2
SOFTWARE
ASP A:113 , MET A:114 , ARG A:270 , HOH A:666
BINDING SITE FOR RESIDUE PEG A 402
03
AC3
SOFTWARE
LEU A:227 , ALA A:228 , VAL A:260
BINDING SITE FOR RESIDUE C8E A 403
04
AC4
SOFTWARE
ARG A:82 , ASP A:113 , ARG A:132
BINDING SITE FOR RESIDUE GOL A 404
05
AC5
SOFTWARE
VAL A:11
BINDING SITE FOR RESIDUE GOL A 405
06
AC6
SOFTWARE
GLU A:201 , GLN A:203 , GLY A:206
BINDING SITE FOR RESIDUE MG A 406
07
AC7
SOFTWARE
ASN A:316 , ILE A:318 , SER A:328 , HOH A:557 , HOH A:595
BINDING SITE FOR RESIDUE MG A 407
08
AC8
SOFTWARE
SER A:125 , ARG A:167
BINDING SITE FOR RESIDUE BR A 408
09
AC9
SOFTWARE
HOH A:514
BINDING SITE FOR RESIDUE BR A 409
10
BC1
SOFTWARE
TYR A:102 , GLY A:103 , VAL A:104 , TYR A:106 , PHE A:129 , VAL A:130 , GLY A:131
BINDING SITE FOR RESIDUE BR A 410
11
BC2
SOFTWARE
MET A:114 , LEU A:115 , PRO A:116 , GLN A:262 , SER A:272
BINDING SITE FOR RESIDUE BR A 411
12
BC3
SOFTWARE
GLN A:66 , GLY A:67 , ASN A:68 , ASN A:69 , SER A:70 , ALA A:75 , ASN A:79 , LYS C:80 , THR C:81 , ARG C:100
BINDING SITE FOR RESIDUE PEG A 412
13
BC4
SOFTWARE
LYS A:80 , THR A:81 , ARG A:100 , GLN B:66 , ASN B:69 , SER B:70 , GLU B:71 , ALA B:75 , ASN B:79 , HOH B:503
BINDING SITE FOR RESIDUE PEG B 401
14
BC5
SOFTWARE
HOH B:639 , HOH B:646
BINDING SITE FOR RESIDUE PEG B 402
15
BC6
SOFTWARE
ARG B:140 , ASN B:141 , SER B:142 , PHE B:153 , SER B:177 , SER B:179 , HOH B:656
BINDING SITE FOR RESIDUE PEG B 403
16
BC7
SOFTWARE
PHE B:267 , TYR B:301 , TYR C:313
BINDING SITE FOR RESIDUE C8E B 404
17
BC8
SOFTWARE
LEU B:259 , ILE B:273
BINDING SITE FOR RESIDUE C8E B 405
18
BC9
SOFTWARE
ARG B:82 , ASP B:113 , ARG B:132
BINDING SITE FOR RESIDUE GOL B 406
19
CC1
SOFTWARE
GLU B:201 , GLN B:203 , GLY B:206 , HOH B:601 , HOH B:673
BINDING SITE FOR RESIDUE MG B 407
20
CC2
SOFTWARE
ASN B:316 , ILE B:318 , SER B:328 , HOH B:600 , HOH C:663
BINDING SITE FOR RESIDUE MG B 408
21
CC3
SOFTWARE
SER B:125 , ARG B:167
BINDING SITE FOR RESIDUE BR B 410
22
CC4
SOFTWARE
ILE B:51
BINDING SITE FOR RESIDUE BR B 411
23
CC5
SOFTWARE
TYR C:98 , GLY C:159 , GLY C:173 , HOH C:586
BINDING SITE FOR RESIDUE C8E C 401
24
CC6
SOFTWARE
ASN C:207 , ASN C:236 , ASN C:252 , HOH C:588 , HOH C:593
BINDING SITE FOR RESIDUE MG C 402
25
CC7
SOFTWARE
HOH B:532 , ASN C:69 , ASP C:74 , HOH C:636
BINDING SITE FOR RESIDUE MG C 403
26
CC8
SOFTWARE
GLU C:201 , GLN C:203 , GLY C:206 , HOH C:606 , HOH C:676
BINDING SITE FOR RESIDUE MG C 404
27
CC9
SOFTWARE
ASN C:316 , ILE C:318 , SER C:328
BINDING SITE FOR RESIDUE MG C 405
28
DC1
SOFTWARE
ASP C:126 , ASP C:127 , PHE C:128 , GLY C:134 , ARG C:163 , ARG C:167 , ARG C:168 , SER C:169 , ASN C:170 , GLN C:200
BINDING SITE FOR RESIDUE PEG C 406
29
DC2
SOFTWARE
LYS B:80 , THR B:81 , GLN C:66 , ASN C:69 , SER C:70 , GLU C:71 , ALA C:75 , ASN C:79 , HOH C:504
BINDING SITE FOR RESIDUE PEG C 407
30
DC3
SOFTWARE
ASP C:113 , ARG C:132 , HOH C:640
BINDING SITE FOR RESIDUE GOL C 409
31
DC4
SOFTWARE
LYS C:16 , HOH C:506 , HOH C:600
BINDING SITE FOR RESIDUE BR C 410
32
DC5
SOFTWARE
SER C:125 , ARG C:167
BINDING SITE FOR RESIDUE BR C 411
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
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End label:
Sorry, no Info available
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 3)
Info
All SCOP Domains
1a: SCOP_d4lsia_ (A:)
1b: SCOP_d4lsib_ (B:)
1c: SCOP_d4lsic_ (C:)
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Protein Domains
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(
)
Organisms
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)
(
)
Class
:
Membrane and cell surface proteins and peptides
(2046)
Fold
:
Transmembrane beta-barrels
(143)
Superfamily
:
Porins
(99)
Family
:
Porin
(49)
Protein domain
:
Porin
(40)
Escherichia coli, different sequences [TaxId: 562]
(27)
1a
d4lsia_
A:
1b
d4lsib_
B:
1c
d4lsic_
C:
[
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CATH Domains
(0, 0)
Info
all CATH domains
View:
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Sorry, no Info available
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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Atom Selection
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Protein
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Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Chain C
Asymmetric Unit 1
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select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
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show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
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