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4LSF
Biol. Unit 2
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Asym.Unit (117 KB)
Biol.Unit 1 (167 KB)
Biol.Unit 2 (166 KB)
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(1)
Title
:
ION SELECTIVITY OF OMPF SOAKED IN 0.1M KBR
Authors
:
D. Balasundaresan, L. Blachowicz, B. Roux
Date
:
22 Jul 13 (Deposition) - 23 Oct 13 (Release) - 15 Jan 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (3x)
Biol. Unit 2: B (3x)
Keywords
:
Porin, Outer Membrane Protein, Beta-Barrel, Ion Transport, Transport Protein
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
B. Dhakshnamoorthy, B. K. Ziervogel, L. Blachowicz, B. Roux
A Structural Study Of Ion Permeation In Ompf Porin From Anomalous X-Ray Diffraction And Molecular Dynamics Simulations.
J. Am. Chem. Soc. V. 135 16561 2013
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Hetero Components
(1, 3)
Info
All Hetero Components
1a: BROMIDE ION (BRa)
1b: BROMIDE ION (BRb)
1c: BROMIDE ION (BRc)
1d: BROMIDE ION (BRd)
1e: BROMIDE ION (BRe)
1f: BROMIDE ION (BRf)
1g: BROMIDE ION (BRg)
2a: GLYCEROL (GOLa)
2b: GLYCEROL (GOLb)
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No.
Name
Count
Type
Full Name
1
BR
-1
Ligand/Ion
BROMIDE ION
2
GOL
3
Ligand/Ion
GLYCEROL
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Sites
(5, 5)
Info
All Sites
1: AC5 (SOFTWARE)
2: AC6 (SOFTWARE)
3: AC7 (SOFTWARE)
4: AC8 (SOFTWARE)
5: AC9 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC5
SOFTWARE
TYR B:102 , TYR B:106 , ASP B:113 , ALA B:123 , ARG B:132 , HOH B:563
BINDING SITE FOR RESIDUE GOL B 401
2
AC6
SOFTWARE
SER B:125 , ARG B:167
BINDING SITE FOR RESIDUE BR B 402
3
AC7
SOFTWARE
ASN B:69 , SER B:70 , GLU B:71 , THR B:81 , BR B:405 , HOH B:524
BINDING SITE FOR RESIDUE BR B 403
4
AC8
SOFTWARE
ASN B:306 , MET B:307 , SER B:308 , VAL B:337 , GLN B:339 , HOH B:526
BINDING SITE FOR RESIDUE BR B 404
5
AC9
SOFTWARE
GLN B:66 , GLY B:67 , ASN B:68 , ASN B:69 , BR B:403
BINDING SITE FOR RESIDUE BR B 405
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SAPs(SNPs)/Variants
(0, 0)
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PROSITE Patterns/Profiles
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Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d4lsfa_ (A:)
1b: SCOP_d4lsfb_ (B:)
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Organisms
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Class
:
Membrane and cell surface proteins and peptides
(2046)
Fold
:
Transmembrane beta-barrels
(143)
Superfamily
:
Porins
(99)
Family
:
Porin
(49)
Protein domain
:
Porin
(40)
Escherichia coli, different sequences [TaxId: 562]
(27)
1a
d4lsfa_
A:
1b
d4lsfb_
B:
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CATH Domains
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Pfam Domains
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Asym.Unit (117 KB)
Header - Asym.Unit
Biol.Unit 1 (167 KB)
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