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4LSE
Asym. Unit
Info
Asym.Unit (180 KB)
Biol.Unit 1 (173 KB)
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(1)
Title
:
ION SELECTIVITY OF OMPF PORIN SOAKED IN 0.2M NABR
Authors
:
D. Balasundaresan, L. Blachowicz, B. Roux
Date
:
22 Jul 13 (Deposition) - 23 Oct 13 (Release) - 15 Jan 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.10
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A,B,C (1x)
Keywords
:
Porin, Outer Membrane Protein, Beta-Barrel, Ion Transport, Transport Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
B. Dhakshnamoorthy, B. K. Ziervogel, L. Blachowicz, B. Roux
A Structural Study Of Ion Permeation In Ompf Porin From Anomalous X-Ray Diffraction And Molecular Dynamics Simulations.
J. Am. Chem. Soc. V. 135 16561 2013
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Hetero Components
(4, 20)
Info
All Hetero Components
1a: BROMIDE ION (BRa)
1b: BROMIDE ION (BRb)
1c: BROMIDE ION (BRc)
1d: BROMIDE ION (BRd)
1e: BROMIDE ION (BRe)
1f: BROMIDE ION (BRf)
1g: BROMIDE ION (BRg)
1h: BROMIDE ION (BRh)
2a: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTA... (C8Ea)
2b: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTA... (C8Eb)
3a: MAGNESIUM ION (MGa)
3b: MAGNESIUM ION (MGb)
3c: MAGNESIUM ION (MGc)
3d: MAGNESIUM ION (MGd)
3e: MAGNESIUM ION (MGe)
3f: MAGNESIUM ION (MGf)
4a: DI(HYDROXYETHYL)ETHER (PEGa)
4b: DI(HYDROXYETHYL)ETHER (PEGb)
4c: DI(HYDROXYETHYL)ETHER (PEGc)
4d: DI(HYDROXYETHYL)ETHER (PEGd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BR
8
Ligand/Ion
BROMIDE ION
2
C8E
2
Ligand/Ion
(HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE
3
MG
6
Ligand/Ion
MAGNESIUM ION
4
PEG
4
Ligand/Ion
DI(HYDROXYETHYL)ETHER
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Sites
(19, 19)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
LYS A:16
BINDING SITE FOR RESIDUE BR A 401
02
AC2
SOFTWARE
GLN A:66 , ASN A:68 , HOH A:582 , HOH A:607
BINDING SITE FOR RESIDUE BR A 402
03
AC3
SOFTWARE
SER A:125 , ARG A:167
BINDING SITE FOR RESIDUE BR A 403
04
AC4
SOFTWARE
MET A:38 , THR A:39 , TYR A:40
BINDING SITE FOR RESIDUE BR A 404
05
AC5
SOFTWARE
HOH A:696
BINDING SITE FOR RESIDUE MG A 405
06
AC6
SOFTWARE
ASN A:207 , ASN A:236 , ASN A:252
BINDING SITE FOR RESIDUE MG A 406
07
AC7
SOFTWARE
TYR A:32 , HOH A:696
BINDING SITE FOR RESIDUE PEG A 407
08
AC8
SOFTWARE
ALA A:228 , ALA A:261
BINDING SITE FOR RESIDUE C8E A 408
09
AC9
SOFTWARE
ASP A:126 , ARG A:168 , SER B:70 , GLU B:71 , GLY B:72
BINDING SITE FOR RESIDUE BR B 401
10
BC1
SOFTWARE
LYS B:16 , HOH B:516
BINDING SITE FOR RESIDUE BR B 402
11
BC2
SOFTWARE
PEG B:404
BINDING SITE FOR RESIDUE MG B 403
12
BC3
SOFTWARE
TYR B:32 , ASP B:121 , MG B:403
BINDING SITE FOR RESIDUE PEG B 404
13
BC4
SOFTWARE
VAL B:174
BINDING SITE FOR RESIDUE C8E B 405
14
BC5
SOFTWARE
PHE B:45 , LYS C:16 , ALA C:17 , ARG C:42
BINDING SITE FOR RESIDUE BR B 406
15
BC6
SOFTWARE
ASN B:207 , ASN B:236 , ASN B:252 , HOH B:572 , HOH B:609 , HOH B:622
BINDING SITE FOR RESIDUE MG B 407
16
BC7
SOFTWARE
ASN C:207 , ASN C:236 , ASN C:252 , HOH C:617 , HOH C:625
BINDING SITE FOR RESIDUE MG C 401
17
BC8
SOFTWARE
ARG C:168 , ASN C:170 , HOH C:703 , HOH C:704
BINDING SITE FOR RESIDUE MG C 403
18
BC9
SOFTWARE
ALA C:166 , ARG C:167 , SER C:248 , GLY C:249
BINDING SITE FOR RESIDUE PEG C 404
19
CC1
SOFTWARE
TYR C:22 , GLU C:117 , HOH C:706
BINDING SITE FOR RESIDUE PEG C 405
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 3)
Info
All SCOP Domains
1a: SCOP_d4lsea_ (A:)
1b: SCOP_d4lseb_ (B:)
1c: SCOP_d4lsec_ (C:)
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Membrane and cell surface proteins and peptides
(2046)
Fold
:
Transmembrane beta-barrels
(143)
Superfamily
:
Porins
(99)
Family
:
Porin
(49)
Protein domain
:
Porin
(40)
Escherichia coli, different sequences [TaxId: 562]
(27)
1a
d4lsea_
A:
1b
d4lseb_
B:
1c
d4lsec_
C:
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CATH Domains
(0, 0)
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all CATH domains
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Pfam Domains
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Sorry, no Info available
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Asymmetric Unit 1
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select residue range 5 to 10 in chain 'A'
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Asym.Unit (180 KB)
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