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4LRL
Biol. Unit 2
Info
Asym.Unit (653 KB)
Biol.Unit 1 (640 KB)
Biol.Unit 2 (324 KB)
Biol.Unit 3 (322 KB)
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(1)
Title
:
STRUCTURE OF AN ENTEROCOCCUS FAECALIS HD-DOMAIN PROTEIN COMPLEXED WITH DGTP AND DTTP
Authors
:
I. I. Vorontsov, G. Minasov, L. Shuvalova, A. Joachimiak, W. F. Anderso Center For Structural Genomics (Mcsg)
Date
:
19 Jul 13 (Deposition) - 20 Nov 13 (Release) - 12 Feb 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.35
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Biol. Unit 2: A,B (1x)
Biol. Unit 3: C,D (1x)
Keywords
:
Structural Genomics, Psi-2, Protein Structure Initiative, Midwest Center For Structural Genomics, Mcsg, Hd Domain, Phosphohydrolase, Dntpase, Allosteric Regulation, Metal Binding Protein, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
I. I. Vorontsov, Y. Wu, M. Delucia, G. Minasov, J. Mehrens, L. Shuvalova, W. F. Anderson, J. Ahn
Mechanisms Of Allosteric Activation And Inhibition Of The Deoxyribonucleoside Triphosphate Triphosphohydrolase From Enterococcus Faecalis.
J. Biol. Chem. V. 289 2815 2014
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Hetero Components
(4, 7)
Info
All Hetero Components
1a: 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE (DGTa)
1b: 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE (DGTb)
1c: 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE (DGTc)
1d: 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE (DGTd)
2a: MALONATE ION (MLIa)
2b: MALONATE ION (MLIb)
3a: NICKEL (II) ION (NIa)
3b: NICKEL (II) ION (NIb)
3c: NICKEL (II) ION (NIc)
3d: NICKEL (II) ION (NId)
4a: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,... (TRSa)
4b: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,... (TRSb)
4c: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,... (TRSc)
5a: THYMIDINE-5'-TRIPHOSPHATE (TTPa)
5b: THYMIDINE-5'-TRIPHOSPHATE (TTPb)
View:
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Label:
No.
Name
Count
Type
Full Name
1
DGT
2
Ligand/Ion
2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE
2
MLI
1
Ligand/Ion
MALONATE ION
3
NI
-1
Ligand/Ion
NICKEL (II) ION
4
TRS
3
Ligand/Ion
2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
5
TTP
1
Ligand/Ion
THYMIDINE-5'-TRIPHOSPHATE
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Sites
(10, 10)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC6 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS A:66 , HIS A:110 , ASP A:111 , ASP A:183 , HOH A:651 , HOH A:801
BINDING SITE FOR RESIDUE NI A 501
02
AC2
SOFTWARE
LYS A:14 , VAL A:15 , PHE A:16 , ILE A:35 , ASN A:36 , GLN A:41 , ARG A:44 , PHE A:64 , HOH A:841 , PHE B:54 , THR B:55 , ARG B:326 , LYS B:330 , HOH B:729 , HOH B:737 , HOH B:780
BINDING SITE FOR RESIDUE DGT A 502
03
AC3
SOFTWARE
ASP A:318 , ARG A:322 , PHE A:356 , TYR A:361 , HOH A:796
BINDING SITE FOR RESIDUE TRS A 503
04
AC4
SOFTWARE
HIS B:66 , HIS B:110 , ASP B:111 , ASP B:183 , HOH B:742 , HOH B:786
BINDING SITE FOR RESIDUE NI B 501
05
AC5
SOFTWARE
PHE A:54 , THR A:55 , VAL A:247 , ARG A:326 , LYS A:330 , HOH A:677 , LYS B:14 , VAL B:15 , PHE B:16 , ASN B:36 , GLN B:41 , ARG B:44 , PHE B:64 , TTP B:503 , HOH B:749
BINDING SITE FOR RESIDUE DGT B 502
06
AC6
SOFTWARE
THR A:55 , PHE A:56 , GLN A:241 , HIS A:245 , HOH A:630 , HOH A:652 , HOH A:677 , HOH A:729 , HOH A:764 , HOH A:815 , VAL B:15 , ARG B:17 , DGT B:502 , ARG D:206 , ARG D:209 , ASN D:223 , HOH D:702
BINDING SITE FOR RESIDUE TTP B 503
07
AC7
SOFTWARE
GLU B:7
BINDING SITE FOR RESIDUE MLI B 504
08
AC8
SOFTWARE
ASP B:318 , PHE B:356 , HOH B:787
BINDING SITE FOR RESIDUE TRS B 505
09
AC9
SOFTWARE
GLN B:135 , PHE B:288
BINDING SITE FOR RESIDUE TRS B 506
10
BC6
SOFTWARE
ARG B:206 , ARG B:209 , HOH B:664 , THR C:55 , PHE C:56 , GLN C:241 , HIS C:245 , HOH C:641 , HOH C:699 , HOH C:711 , VAL D:15 , ARG D:17 , DGT D:502 , HOH D:601
BINDING SITE FOR RESIDUE TTP D 503
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d4lrla_ (A:)
1b: SCOP_d4lrlb_ (B:)
1c: SCOP_d4lrlc_ (C:)
1d: SCOP_d4lrld_ (D:)
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Protein Domains
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Organisms
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Class
:
All alpha proteins
(14657)
Fold
:
HD-domain/PDEase-like
(204)
Superfamily
:
HD-domain/PDEase-like
(204)
Family
:
HD domain
(20)
Protein domain
:
Hypothetical protein EF1143
(3)
Enterococcus faecalis [TaxId: 1351]
(3)
1a
d4lrla_
A:
1b
d4lrlb_
B:
1c
d4lrlc_
C:
1d
d4lrld_
D:
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CATH Domains
(0, 0)
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Pfam Domains
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Asymmetric Unit 1
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Asym.Unit (653 KB)
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