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4LOR
Asym. Unit
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Asym.Unit (124 KB)
Biol.Unit 1 (115 KB)
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(1)
Title
:
C1S CUB1-EGF-CUB2 IN COMPLEX WITH A COLLAGEN-LIKE PEPTIDE FROM C1Q
Authors
:
R. Wallis, U. Venkatraman Girija, P. C. E. Moody, J. E. Marshall
Date
:
13 Jul 13 (Deposition) - 07 Aug 13 (Release) - 04 Sep 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.50
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Cub Domain, Egf-Like Domain, Protein Collagen Complex, C1 Complex, Hydrolase-Protein Binding Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
U. Venkatraman Girija, A. R. Gingras, J. E. Marshall, R. Panchal, M. A. Sheikh, P. Gal, W. J. Schwaeble, D. A. Mitchell, P. C. Moody, R. Wallis
Structural Basis Of The C1Q/C1S Interaction And Its Central Role In Assembly Of The C1 Complex Of Complement Activation
Proc. Natl. Acad. Sci. Usa V. 110 13916 2013
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Hetero Components
(4, 26)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
1c: CALCIUM ION (CAc)
2a: 4-HYDROXYPROLINE (HYPa)
2b: 4-HYDROXYPROLINE (HYPb)
2c: 4-HYDROXYPROLINE (HYPc)
2d: 4-HYDROXYPROLINE (HYPd)
2e: 4-HYDROXYPROLINE (HYPe)
2f: 4-HYDROXYPROLINE (HYPf)
2g: 4-HYDROXYPROLINE (HYPg)
2h: 4-HYDROXYPROLINE (HYPh)
2i: 4-HYDROXYPROLINE (HYPi)
2j: 4-HYDROXYPROLINE (HYPj)
2k: 4-HYDROXYPROLINE (HYPk)
2l: 4-HYDROXYPROLINE (HYPl)
2m: 4-HYDROXYPROLINE (HYPm)
2n: 4-HYDROXYPROLINE (HYPn)
2o: 4-HYDROXYPROLINE (HYPo)
2p: 4-HYDROXYPROLINE (HYPp)
2q: 4-HYDROXYPROLINE (HYPq)
2r: 4-HYDROXYPROLINE (HYPr)
2s: 4-HYDROXYPROLINE (HYPs)
2t: 4-HYDROXYPROLINE (HYPt)
4a: N-ACETYL-D-GLUCOSAMINE (NAGa)
3a: SODIUM ION (NAa)
3b: SODIUM ION (NAb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
3
Ligand/Ion
CALCIUM ION
2
HYP
20
Mod. Amino Acid
4-HYDROXYPROLINE
3
NA
2
Ligand/Ion
SODIUM ION
4
NAG
1
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
[
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Sites
(9, 9)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
9: AC9 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLU A:45 , ASP A:53 , ASP A:98 , SER A:100 , ASN A:101 , HOH A:408
BINDING SITE FOR RESIDUE CA A 301
2
AC2
SOFTWARE
ASP A:116 , ILE A:117 , GLU A:119 , ASN A:134 , PHE A:135 , GLY A:138 , HOH A:401
BINDING SITE FOR RESIDUE CA A 302
3
AC3
SOFTWARE
GLU A:211 , ASP A:221 , ASP A:260 , THR A:262 , GLY A:263 , HOH A:405
BINDING SITE FOR RESIDUE CA A 303
4
AC4
SOFTWARE
SER A:10 , PRO A:11 , TYR A:13 , GLN A:15 , TYR A:17 , THR A:106
BINDING SITE FOR RESIDUE NA A 304
5
AC5
SOFTWARE
SER A:174 , PRO A:175 , TYR A:177 , LYS A:179 , LYS A:266
BINDING SITE FOR RESIDUE NA A 305
6
AC6
SOFTWARE
ASN A:159
BINDING SITE FOR MONO-SACCHARIDE NAG A 306 BOUND TO ASN A 159
7
AC7
SOFTWARE
GLU A:48 , HOH B:101 , HOH B:102 , HYP C:4 , GLY C:5 , PRO C:6 , GLY C:8 , PRO C:9 , GLY C:11 , PRO C:12 , GLY C:14 , LYS C:15 , LEU C:16 , GLY C:17 , PRO C:18 , GLY C:20 , PRO C:21 , GLY C:23 , PRO C:24 , GLY C:26 , GLY D:2 , PRO D:3 , HYP D:4 , GLY D:5 , PRO D:6 , HYP D:7 , GLY D:8 , PRO D:9 , HYP D:10 , GLY D:11 , HYP D:13 , GLY D:14 , LYS D:15 , LEU D:16 , GLY D:17 , HYP D:19 , GLY D:20 , PRO D:21 , GLY D:23 , PRO D:24
BINDING SITE FOR CHAIN B OF COLLAGEN-LIKE PEPTIDE FROM C1Q
8
AC8
SOFTWARE
TYR A:52 , ASP A:152 , HOH A:413 , HYP B:4 , GLY B:5 , HYP B:7 , GLY B:8 , PRO B:9 , HYP B:10 , GLY B:11 , PRO B:12 , HYP B:13 , GLY B:14 , LYS B:15 , LEU B:16 , GLY B:17 , PRO B:18 , HYP B:19 , GLY B:20 , PRO B:21 , HYP B:22 , GLY B:23 , PRO B:24 , HYP B:25 , HOH C:101 , PRO D:3 , GLY D:5 , PRO D:6 , GLY D:8 , PRO D:9 , GLY D:11 , PRO D:12 , GLY D:14 , LYS D:15 , LEU D:16 , GLY D:17 , PRO D:18 , GLY D:20 , PRO D:21 , GLY D:23 , PRO D:24
BINDING SITE FOR CHAIN C OF COLLAGEN-LIKE PEPTIDE FROM C1Q
9
AC9
SOFTWARE
GLU A:45 , ASP A:98 , PHE A:99 , SER A:100 , GLU A:102 , PHE A:123 , TYR A:139 , ASP A:151 , MET A:153 , HYP B:4 , GLY B:5 , PRO B:6 , GLY B:8 , PRO B:9 , GLY B:11 , PRO B:12 , GLY B:14 , LYS B:15 , GLY B:17 , PRO B:18 , GLY B:20 , PRO B:21 , GLY B:23 , PRO B:24 , GLY B:26 , HYP C:4 , GLY C:5 , PRO C:6 , HYP C:7 , GLY C:8 , HYP C:10 , GLY C:11 , PRO C:12 , HYP C:13 , GLY C:14 , LYS C:15 , LEU C:16 , GLY C:17 , PRO C:18 , HYP C:19 , GLY C:20 , PRO C:21 , HYP C:22 , GLY C:23 , PRO C:24 , HYP C:25 , HOH D:101
BINDING SITE FOR CHAIN D OF COLLAGEN-LIKE PEPTIDE FROM C1Q
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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PROSITE Patterns/Profiles
(0, 0)
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 3)
Info
All SCOP Domains
1a: SCOP_d4lora1 (A:2-116)
1b: SCOP_d4lora3 (A:160-277)
2a: SCOP_d4lora2 (A:117-159)
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Protein Domains
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Organisms
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Class
:
All beta proteins
(24004)
Fold
:
CUB-like
(21)
Superfamily
:
Spermadhesin, CUB domain
(10)
Family
:
Spermadhesin, CUB domain
(9)
Protein domain
:
Complement C1S component
(3)
Human (Homo sapiens) [TaxId: 9606]
(3)
1a
d4lora1
A:2-116
1b
d4lora3
A:160-277
Class
:
Small proteins
(3458)
Fold
:
Knottins (small inhibitors, toxins, lectins)
(761)
Superfamily
:
EGF/Laminin
(347)
Family
:
EGF-type module
(304)
Protein domain
:
Complement C1S component
(3)
Human (Homo sapiens) [TaxId: 9606]
(3)
2a
d4lora2
A:117-159
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CATH Domains
(0, 0)
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all CATH domains
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Sorry, no Info available
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Pfam Domains
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Sorry, no Info available
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Asymmetric Unit 1
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