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4LNK
Biol. Unit 1
Info
Asym.Unit (444 KB)
Biol.Unit 1 (863 KB)
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(1)
Title
:
B. SUBTILIS GLUTAMINE SYNTHETASE STRUCTURES REVEAL LARGE ACTIVE SITE CONFORMATIONAL CHANGES AND BASIS FOR ISOENZYME SPECIFIC REGULATION: STRUCTURE OF GS-GLUTAMATE-AMPPCP COMPLEX
Authors
:
M. A. Schumacher, N. Chinnam, N. Tonthat, S. Fisher, L. Wray
Date
:
11 Jul 13 (Deposition) - 30 Oct 13 (Release) - 15 Jan 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.87
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B,C,D,E,F (2x)
Keywords
:
Alpha-Beta, Ligase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
D. S. Murray, N. Chinnam, N. K. Tonthat, T. Whitfill, L. V. Wray, S. H. Fisher, M. A. Schumacher
Structures Of The Bacillus Subtilis Glutamine Synthetase Dodecamer Reveal Large Intersubunit Catalytic Conformationa Changes Linked To A Unique Feedback Inhibition Mechanism.
J. Biol. Chem. V. 288 35801 2013
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Hetero Components
(3, 30)
Info
All Hetero Components
1a: ADENOSINE-5'-DIPHOSPHATE (ADPa)
1b: ADENOSINE-5'-DIPHOSPHATE (ADPb)
1c: ADENOSINE-5'-DIPHOSPHATE (ADPc)
1d: ADENOSINE-5'-DIPHOSPHATE (ADPd)
1e: ADENOSINE-5'-DIPHOSPHATE (ADPe)
1f: ADENOSINE-5'-DIPHOSPHATE (ADPf)
2a: GLUTAMIC ACID (GLUa)
2b: GLUTAMIC ACID (GLUb)
2c: GLUTAMIC ACID (GLUc)
2d: GLUTAMIC ACID (GLUd)
2e: GLUTAMIC ACID (GLUe)
2f: GLUTAMIC ACID (GLUf)
3a: MAGNESIUM ION (MGa)
3b: MAGNESIUM ION (MGb)
3c: MAGNESIUM ION (MGc)
3d: MAGNESIUM ION (MGd)
3e: MAGNESIUM ION (MGe)
3f: MAGNESIUM ION (MGf)
3g: MAGNESIUM ION (MGg)
3h: MAGNESIUM ION (MGh)
3i: MAGNESIUM ION (MGi)
3j: MAGNESIUM ION (MGj)
3k: MAGNESIUM ION (MGk)
3l: MAGNESIUM ION (MGl)
4a: SULFATE ION (SO4a)
4b: SULFATE ION (SO4b)
4c: SULFATE ION (SO4c)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ADP
12
Ligand/Ion
ADENOSINE-5'-DIPHOSPHATE
2
GLU
12
Mod. Amino Acid
GLUTAMIC ACID
3
MG
-1
Ligand/Ion
MAGNESIUM ION
4
SO4
6
Ligand/Ion
SULFATE ION
[
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Sites
(27, 27)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLU A:134 , GLU A:189 , VAL A:190 , ASN A:240 , GLY A:241 , GLY A:243 , HIS A:245 , ARG A:298 , GLU A:304 , ARG A:335 , MG A:504
BINDING SITE FOR RESIDUE GLU A 501
02
AC2
SOFTWARE
GLY A:130 , PHE A:199 , TYR A:201 , ASN A:247 , SER A:249 , SER A:325 , ILE A:328 , SER A:329 , ARG A:331 , LYS B:44 , MET B:51
BINDING SITE FOR RESIDUE ADP A 502
03
AC3
SOFTWARE
GLU A:132 , HIS A:245 , GLU A:333 , GLU B:65
BINDING SITE FOR RESIDUE MG A 503
04
AC4
SOFTWARE
GLU A:134 , GLU A:189 , GLU A:196 , GLU A:501
BINDING SITE FOR RESIDUE MG A 504
05
AC5
SOFTWARE
ASN A:48 , LYS A:49 , TYR A:69 , TYR A:71
BINDING SITE FOR RESIDUE SO4 A 505
06
AC6
SOFTWARE
ASP A:73 , ASN A:75 , THR A:76 , ARG A:206 , ASP A:209 , HOH A:607
BINDING SITE FOR RESIDUE SO4 A 506
07
AC7
SOFTWARE
GLU B:134 , GLU B:189 , ASN B:240 , HIS B:245 , ARG B:298 , GLU B:304 , ARG B:335 , MG B:503 , ARG C:62
BINDING SITE FOR RESIDUE GLU B 501
08
AC8
SOFTWARE
GLY B:130 , PHE B:199 , TYR B:201 , ASN B:247 , SER B:249 , SER B:325 , ILE B:328 , SER B:329 , THR B:330 , ARG B:331 , LYS C:44 , MET C:51
BINDING SITE FOR RESIDUE ADP B 502
09
AC9
SOFTWARE
GLU B:134 , GLU B:189 , GLU B:196 , HIS B:245 , GLU B:501
BINDING SITE FOR RESIDUE MG B 503
10
BC1
SOFTWARE
GLU B:132 , HIS B:245 , GLU B:333 , GLU C:65
BINDING SITE FOR RESIDUE MG B 504
11
BC2
SOFTWARE
GLU C:134 , TYR C:156 , GLU C:189 , VAL C:190 , GLN C:194 , ASN C:240 , GLY C:241 , GLY C:243 , HIS C:245 , ARG C:298 , GLU C:304 , MG C:503 , HOH C:604
BINDING SITE FOR RESIDUE GLU C 501
12
BC3
SOFTWARE
GLY C:130 , PHE C:199 , TYR C:201 , ASN C:247 , SER C:249 , SER C:325 , ILE C:328 , SER C:329 , ARG C:331 , LYS D:44 , MET D:51
BINDING SITE FOR RESIDUE ADP C 502
13
BC4
SOFTWARE
GLU C:134 , GLU C:189 , GLU C:196 , GLU C:501
BINDING SITE FOR RESIDUE MG C 503
14
BC5
SOFTWARE
GLU C:132 , HIS C:245 , GLU C:333 , GLU D:65
BINDING SITE FOR RESIDUE MG C 504
15
BC6
SOFTWARE
GLU D:134 , TYR D:156 , GLU D:189 , ASN D:240 , GLY D:241 , GLY D:243 , HIS D:245 , ARG D:298 , TYR D:303 , GLU D:304 , ALA D:305 , MG D:503
BINDING SITE FOR RESIDUE GLU D 501
16
BC7
SOFTWARE
GLY D:130 , GLU D:184 , PHE D:199 , TYR D:201 , ASN D:247 , SER D:249 , SER D:325 , ILE D:328 , SER D:329 , ARG D:331 , LYS E:44 , MET E:51
BINDING SITE FOR RESIDUE ADP D 502
17
BC8
SOFTWARE
GLU D:134 , HIS D:187 , GLU D:189 , GLU D:196 , GLU D:501 , HOH E:601
BINDING SITE FOR RESIDUE MG D 503
18
BC9
SOFTWARE
GLU D:132 , HIS D:245 , GLU D:333 , GLU E:65 , HOH E:601
BINDING SITE FOR RESIDUE MG D 504
19
CC1
SOFTWARE
GLU E:134 , GLU E:189 , ASN E:240 , GLY E:241 , GLY E:243 , HIS E:245 , ARG E:298 , GLU E:304 , PRO E:306 , ARG E:335 , MG E:504
BINDING SITE FOR RESIDUE GLU E 501
20
CC2
SOFTWARE
ASN E:128 , GLY E:130 , PHE E:199 , TYR E:201 , ASN E:247 , SER E:249 , PHE E:251 , SER E:325 , ILE E:328 , SER E:329 , ARG E:331 , LYS F:44 , LYS F:49 , MET F:51
BINDING SITE FOR RESIDUE ADP E 502
21
CC3
SOFTWARE
GLU E:132 , HIS E:245 , GLU E:333 , GLU F:65
BINDING SITE FOR RESIDUE MG E 503
22
CC4
SOFTWARE
GLU E:132 , GLU E:134 , GLU E:189 , GLU E:196 , GLU E:501
BINDING SITE FOR RESIDUE MG E 504
23
CC5
SOFTWARE
ASN E:17 , THR E:83 , ALA E:84 , LYS E:86 , GLY E:87 , LYS E:88
BINDING SITE FOR RESIDUE SO4 E 505
24
CC6
SOFTWARE
ARG A:62 , GLU F:134 , GLU F:189 , VAL F:190 , ASN F:240 , GLY F:241 , HIS F:245 , ARG F:298 , GLU F:304
BINDING SITE FOR RESIDUE GLU F 501
25
CC7
SOFTWARE
LYS A:44 , MET A:51 , GLY F:130 , GLU F:184 , PHE F:199 , TYR F:201 , ASN F:247 , SER F:249 , SER F:325 , ILE F:328 , SER F:329 , ARG F:331
BINDING SITE FOR RESIDUE ADP F 502
26
CC8
SOFTWARE
GLU F:132 , HIS F:245 , GLU F:333
BINDING SITE FOR RESIDUE MG F 503
27
CC9
SOFTWARE
GLU F:134 , GLU F:189 , GLU F:196
BINDING SITE FOR RESIDUE MG F 504
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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PROSITE Patterns/Profiles
(, 0)
Info
All PROSITE Patterns/Profiles
;
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End label:
Sorry, no Info available
[
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(2, 12)
Info
All SCOP Domains
1a: SCOP_d4lnka1 (A:2-104)
1b: SCOP_d4lnkb1 (B:2-104)
1c: SCOP_d4lnkc1 (C:2-104)
1d: SCOP_d4lnkd1 (D:2-104)
1e: SCOP_d4lnke1 (E:2-104)
1f: SCOP_d4lnkf1 (F:2-104)
2a: SCOP_d4lnka2 (A:105-444)
2b: SCOP_d4lnkb2 (B:105-444)
2c: SCOP_d4lnkc2 (C:105-444)
2d: SCOP_d4lnkd2 (D:105-444)
2e: SCOP_d4lnke2 (E:105-444)
2f: SCOP_d4lnkf2 (F:105-444)
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(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
beta-Grasp (ubiquitin-like)
(1032)
Superfamily
:
Glutamine synthetase, N-terminal domain
(20)
Family
:
automated matches
(12)
Protein domain
:
automated matches
(12)
Bacillus subtilis [TaxId: 1423]
(5)
1a
d4lnka1
A:2-104
1b
d4lnkb1
B:2-104
1c
d4lnkc1
C:2-104
1d
d4lnkd1
D:2-104
1e
d4lnke1
E:2-104
1f
d4lnkf1
F:2-104
Fold
:
Glutamine synthetase/guanido kinase
(68)
Superfamily
:
Glutamine synthetase/guanido kinase
(68)
Family
:
automated matches
(18)
Protein domain
:
automated matches
(18)
Bacillus subtilis [TaxId: 1423]
(5)
2a
d4lnka2
A:105-444
2b
d4lnkb2
B:105-444
2c
d4lnkc2
C:105-444
2d
d4lnkd2
D:105-444
2e
d4lnke2
E:105-444
2f
d4lnkf2
F:105-444
[
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]
CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(0, 0)
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all PFAM domains
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Sorry, no Info available
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Asymmetric Unit 1
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