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4LNF
Asym. Unit
Info
Asym.Unit (869 KB)
Biol.Unit 1 (861 KB)
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(1)
Title
:
B. SUBTILIS GLUTAMINE SYNTHETASE STRUCTURES REVEAL LARGE ACTIVE SITE CONFORMATIONAL CHANGES AND BASIS FOR ISOENZYME SPECIFIC REGULATION: STRUCTURE OF GS-Q
Authors
:
M. A. Schumacher, N. Chinnam, N. Tonthat, S. Fisher, L. Wray
Date
:
11 Jul 13 (Deposition) - 13 Nov 13 (Release) - 15 Jan 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.95
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L
Biol. Unit 1: A,B,C,D,E,F,G,H,I,J,K,L (1x)
Keywords
:
Glutamine Synthetase, Gs, Enzyme, Alpha-Beta, Tnra, Glnr-Dna, Ligase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
D. S. Murray, N. Chinnam, N. K. Tonthat, T. Whitfill, L. V. Wray, S. H. Fisher, M. A. Schumacher
Structures Of The Bacillus Subtilis Glutamine Synthetase Dodecamer Reveal Large Intersubunit Catalytic Conformationa Changes Linked To A Unique Feedback Inhibition Mechanism.
J. Biol. Chem. V. 288 35801 2013
[
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Hetero Components
(3, 52)
Info
All Hetero Components
1a: GLUTAMINE (GLNa)
1b: GLUTAMINE (GLNb)
1c: GLUTAMINE (GLNc)
1d: GLUTAMINE (GLNd)
1e: GLUTAMINE (GLNe)
1f: GLUTAMINE (GLNf)
1g: GLUTAMINE (GLNg)
1h: GLUTAMINE (GLNh)
1i: GLUTAMINE (GLNi)
1j: GLUTAMINE (GLNj)
1k: GLUTAMINE (GLNk)
1l: GLUTAMINE (GLNl)
2a: MAGNESIUM ION (MGa)
2aa: MAGNESIUM ION (MGaa)
2ab: MAGNESIUM ION (MGab)
2ac: MAGNESIUM ION (MGac)
2ad: MAGNESIUM ION (MGad)
2ae: MAGNESIUM ION (MGae)
2af: MAGNESIUM ION (MGaf)
2ag: MAGNESIUM ION (MGag)
2ah: MAGNESIUM ION (MGah)
2ai: MAGNESIUM ION (MGai)
2aj: MAGNESIUM ION (MGaj)
2b: MAGNESIUM ION (MGb)
2c: MAGNESIUM ION (MGc)
2d: MAGNESIUM ION (MGd)
2e: MAGNESIUM ION (MGe)
2f: MAGNESIUM ION (MGf)
2g: MAGNESIUM ION (MGg)
2h: MAGNESIUM ION (MGh)
2i: MAGNESIUM ION (MGi)
2j: MAGNESIUM ION (MGj)
2k: MAGNESIUM ION (MGk)
2l: MAGNESIUM ION (MGl)
2m: MAGNESIUM ION (MGm)
2n: MAGNESIUM ION (MGn)
2o: MAGNESIUM ION (MGo)
2p: MAGNESIUM ION (MGp)
2q: MAGNESIUM ION (MGq)
2r: MAGNESIUM ION (MGr)
2s: MAGNESIUM ION (MGs)
2t: MAGNESIUM ION (MGt)
2u: MAGNESIUM ION (MGu)
2v: MAGNESIUM ION (MGv)
2w: MAGNESIUM ION (MGw)
2x: MAGNESIUM ION (MGx)
2y: MAGNESIUM ION (MGy)
2z: MAGNESIUM ION (MGz)
3a: PHOSPHATE ION (PO4a)
3b: PHOSPHATE ION (PO4b)
3c: PHOSPHATE ION (PO4c)
3d: PHOSPHATE ION (PO4d)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GLN
12
Mod. Amino Acid
GLUTAMINE
2
MG
36
Ligand/Ion
MAGNESIUM ION
3
PO4
4
Ligand/Ion
PHOSPHATE ION
[
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Sites
(52, 52)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
34: DC7 (SOFTWARE)
35: DC8 (SOFTWARE)
36: DC9 (SOFTWARE)
37: EC1 (SOFTWARE)
38: EC2 (SOFTWARE)
39: EC3 (SOFTWARE)
40: EC4 (SOFTWARE)
41: EC5 (SOFTWARE)
42: EC6 (SOFTWARE)
43: EC7 (SOFTWARE)
44: EC8 (SOFTWARE)
45: EC9 (SOFTWARE)
46: FC1 (SOFTWARE)
47: FC2 (SOFTWARE)
48: FC3 (SOFTWARE)
49: FC4 (SOFTWARE)
50: FC5 (SOFTWARE)
51: FC6 (SOFTWARE)
52: FC7 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLU A:134 , GLU A:189 , GLU A:196 , GLN A:503 , PO4 A:504
BINDING SITE FOR RESIDUE MG A 501
02
AC2
SOFTWARE
GLU A:132 , HIS A:245 , GLU A:333 , PO4 A:504
BINDING SITE FOR RESIDUE MG A 502
03
AC3
SOFTWARE
GLU A:134 , TYR A:156 , GLU A:189 , GLN A:194 , ASN A:240 , GLY A:241 , ARG A:298 , GLU A:304 , MG A:501 , PO4 A:504
BINDING SITE FOR RESIDUE GLN A 503
04
AC4
SOFTWARE
GLU A:132 , GLU A:134 , GLU A:196 , HIS A:245 , MG A:501 , MG A:502 , GLN A:503
BINDING SITE FOR RESIDUE PO4 A 504
05
AC5
SOFTWARE
HIS A:416
BINDING SITE FOR RESIDUE MG A 505
06
AC6
SOFTWARE
GLU B:134 , GLU B:189 , GLU B:196 , GLN B:503
BINDING SITE FOR RESIDUE MG B 501
07
AC7
SOFTWARE
GLU B:132 , HIS B:245 , GLU B:333 , HOH B:603 , GLU C:65
BINDING SITE FOR RESIDUE MG B 502
08
AC8
SOFTWARE
GLU B:134 , GLU B:189 , GLN B:194 , ASN B:240 , GLY B:241 , HIS B:245 , ARG B:298 , GLU B:304 , ARG B:335 , MG B:501
BINDING SITE FOR RESIDUE GLN B 503
09
AC9
SOFTWARE
GLU B:58 , HIS B:416
BINDING SITE FOR RESIDUE MG B 504
10
BC1
SOFTWARE
GLU C:134 , GLU C:189 , GLU C:196 , GLN C:502 , PO4 C:504
BINDING SITE FOR RESIDUE MG C 501
11
BC2
SOFTWARE
GLU C:134 , TYR C:156 , GLU C:189 , GLY C:241 , SER C:242 , GLY C:243 , HIS C:245 , ARG C:298 , GLU C:304 , MG C:501 , PO4 C:504
BINDING SITE FOR RESIDUE GLN C 502
12
BC3
SOFTWARE
GLU C:132 , HIS C:245 , ARG C:321 , GLU C:333 , PO4 C:504 , GLU D:65
BINDING SITE FOR RESIDUE MG C 503
13
BC4
SOFTWARE
GLU C:132 , GLU C:134 , GLU C:196 , HIS C:245 , GLU C:333 , MG C:501 , GLN C:502 , MG C:503
BINDING SITE FOR RESIDUE PO4 C 504
14
BC5
SOFTWARE
HIS C:416
BINDING SITE FOR RESIDUE MG C 505
15
BC6
SOFTWARE
GLU D:134 , GLU D:189 , GLU D:196 , GLN D:503
BINDING SITE FOR RESIDUE MG D 501
16
BC7
SOFTWARE
GLU D:132 , HIS D:245 , GLU D:333
BINDING SITE FOR RESIDUE MG D 502
17
BC8
SOFTWARE
GLU D:134 , GLU D:189 , GLY D:241 , HIS D:245 , ARG D:298 , GLU D:304 , MG D:501
BINDING SITE FOR RESIDUE GLN D 503
18
BC9
SOFTWARE
GLU D:58 , HIS D:416 , HOH D:605
BINDING SITE FOR RESIDUE MG D 504
19
CC1
SOFTWARE
GLU E:134 , TYR E:156 , GLU E:189 , GLN E:194 , GLU E:196 , ASN E:240 , GLY E:241 , GLY E:243 , ARG E:298 , GLU E:304 , MG E:503 , HOH E:603
BINDING SITE FOR RESIDUE GLN E 501
20
CC2
SOFTWARE
GLU E:132 , HIS E:245 , GLU E:333
BINDING SITE FOR RESIDUE MG E 502
21
CC3
SOFTWARE
GLU E:134 , GLU E:189 , GLU E:196 , GLN E:501 , HOH E:603
BINDING SITE FOR RESIDUE MG E 503
22
CC4
SOFTWARE
GLU E:58 , HIS E:416
BINDING SITE FOR RESIDUE MG E 504
23
CC5
SOFTWARE
GLU F:132 , HIS F:245 , GLU F:333 , HOH F:616
BINDING SITE FOR RESIDUE MG F 501
24
CC6
SOFTWARE
GLU F:134 , GLU F:189 , GLU F:196 , GLN F:503
BINDING SITE FOR RESIDUE MG F 502
25
CC7
SOFTWARE
GLU F:134 , TYR F:156 , GLU F:189 , ASN F:240 , GLY F:241 , GLY F:243 , HIS F:245 , ARG F:298 , GLU F:304 , MG F:502
BINDING SITE FOR RESIDUE GLN F 503
26
CC8
SOFTWARE
GLU F:58 , HIS F:416
BINDING SITE FOR RESIDUE MG F 504
27
CC9
SOFTWARE
GLU G:134 , GLU G:189 , GLU G:196 , GLN G:503 , PO4 G:504
BINDING SITE FOR RESIDUE MG G 501
28
DC1
SOFTWARE
GLU G:132 , HIS G:245 , GLU G:333 , PO4 G:504 , GLU L:65
BINDING SITE FOR RESIDUE MG G 502
29
DC2
SOFTWARE
GLU G:134 , GLU G:189 , GLY G:241 , GLY G:243 , HIS G:245 , ARG G:298 , GLU G:304 , MG G:501 , PO4 G:504
BINDING SITE FOR RESIDUE GLN G 503
30
DC3
SOFTWARE
GLU G:132 , GLU G:134 , GLU G:196 , HIS G:245 , GLU G:333 , MG G:501 , MG G:502 , GLN G:503
BINDING SITE FOR RESIDUE PO4 G 504
31
DC4
SOFTWARE
GLU G:58 , HIS G:416
BINDING SITE FOR RESIDUE MG G 505
32
DC5
SOFTWARE
GLU H:134 , GLU H:189 , GLU H:196 , GLN H:503 , PO4 H:504
BINDING SITE FOR RESIDUE MG H 501
33
DC6
SOFTWARE
GLU H:132 , HIS H:245 , GLU H:333 , PO4 H:504
BINDING SITE FOR RESIDUE MG H 502
34
DC7
SOFTWARE
GLU H:134 , TYR H:156 , GLU H:189 , GLU H:196 , GLY H:241 , ARG H:298 , GLU H:304 , ALA H:305 , MG H:501 , PO4 H:504 , HOH H:601
BINDING SITE FOR RESIDUE GLN H 503
35
DC8
SOFTWARE
GLU G:65 , GLU H:132 , TYR H:156 , GLU H:196 , HIS H:245 , GLU H:333 , MG H:501 , MG H:502 , GLN H:503
BINDING SITE FOR RESIDUE PO4 H 504
36
DC9
SOFTWARE
GLU H:58 , HIS H:416
BINDING SITE FOR RESIDUE MG H 505
37
EC1
SOFTWARE
GLU I:134 , GLU I:189 , GLU I:196 , GLN I:503
BINDING SITE FOR RESIDUE MG I 501
38
EC2
SOFTWARE
HOH H:602 , GLU I:132 , HIS I:245 , GLU I:333
BINDING SITE FOR RESIDUE MG I 502
39
EC3
SOFTWARE
GLU I:134 , TYR I:156 , GLU I:189 , ASN I:240 , GLY I:241 , HIS I:245 , ARG I:298 , GLU I:304 , MG I:501
BINDING SITE FOR RESIDUE GLN I 503
40
EC4
SOFTWARE
GLU I:58 , HIS I:416
BINDING SITE FOR RESIDUE MG I 504
41
EC5
SOFTWARE
GLU J:134 , GLU J:189 , GLU J:196 , GLN J:503
BINDING SITE FOR RESIDUE MG J 501
42
EC6
SOFTWARE
GLU J:132 , HIS J:245 , GLU J:333
BINDING SITE FOR RESIDUE MG J 502
43
EC7
SOFTWARE
ARG I:62 , GLU J:134 , TYR J:156 , GLU J:189 , ASN J:240 , GLY J:241 , HIS J:245 , ARG J:298 , GLU J:304 , MG J:501
BINDING SITE FOR RESIDUE GLN J 503
44
EC8
SOFTWARE
HIS J:416
BINDING SITE FOR RESIDUE MG J 504
45
EC9
SOFTWARE
GLU K:134 , GLU K:189 , GLU K:196 , GLN K:503
BINDING SITE FOR RESIDUE MG K 501
46
FC1
SOFTWARE
GLU J:65 , GLU K:132 , HIS K:245 , GLU K:333
BINDING SITE FOR RESIDUE MG K 502
47
FC2
SOFTWARE
GLU K:134 , TYR K:156 , GLU K:189 , GLY K:241 , ARG K:298 , GLU K:304 , ALA K:305 , MG K:501 , HOH K:602
BINDING SITE FOR RESIDUE GLN K 503
48
FC3
SOFTWARE
GLU K:58 , HIS K:416
BINDING SITE FOR RESIDUE MG K 504
49
FC4
SOFTWARE
GLU L:134 , GLU L:189 , GLU L:196 , MG L:502 , GLN L:503
BINDING SITE FOR RESIDUE MG L 501
50
FC5
SOFTWARE
GLU L:132 , HIS L:245 , GLU L:333 , MG L:501 , GLN L:503 , HOH L:602
BINDING SITE FOR RESIDUE MG L 502
51
FC6
SOFTWARE
GLU L:134 , GLU L:189 , GLY L:241 , HIS L:245 , ARG L:298 , MG L:501 , MG L:502 , HOH L:615
BINDING SITE FOR RESIDUE GLN L 503
52
FC7
SOFTWARE
HIS L:416 , HOH L:621
BINDING SITE FOR RESIDUE MG L 504
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
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]
PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
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Label:
End label:
Sorry, no Info available
[
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]
Exons
(0, 0)
Info
All Exons
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Label:
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Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 24)
Info
All SCOP Domains
1a: SCOP_d4lnfa1 (A:2-104)
1b: SCOP_d4lnfb1 (B:2-104)
1c: SCOP_d4lnfc1 (C:2-104)
1d: SCOP_d4lnfd1 (D:2-104)
1e: SCOP_d4lnfe1 (E:2-104)
1f: SCOP_d4lnff1 (F:2-104)
1g: SCOP_d4lnfg1 (G:2-104)
1h: SCOP_d4lnfh1 (H:2-104)
1i: SCOP_d4lnfi1 (I:2-104)
1j: SCOP_d4lnfj1 (J:4-104)
1k: SCOP_d4lnfk1 (K:2-104)
1l: SCOP_d4lnfl1 (L:2-104)
2a: SCOP_d4lnfa2 (A:105-444)
2b: SCOP_d4lnfb2 (B:105-444)
2c: SCOP_d4lnfc2 (C:105-444)
2d: SCOP_d4lnfd2 (D:105-444)
2e: SCOP_d4lnfe2 (E:105-444)
2f: SCOP_d4lnff2 (F:105-444)
2g: SCOP_d4lnfg2 (G:105-444)
2h: SCOP_d4lnfh2 (H:105-444)
2i: SCOP_d4lnfi2 (I:105-444)
2j: SCOP_d4lnfj2 (J:105-444)
2k: SCOP_d4lnfk2 (K:105-444)
2l: SCOP_d4lnfl2 (L:105-444)
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Classes
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(
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
beta-Grasp (ubiquitin-like)
(1032)
Superfamily
:
Glutamine synthetase, N-terminal domain
(20)
Family
:
automated matches
(12)
Protein domain
:
automated matches
(12)
Bacillus subtilis [TaxId: 1423]
(5)
1a
d4lnfa1
A:2-104
1b
d4lnfb1
B:2-104
1c
d4lnfc1
C:2-104
1d
d4lnfd1
D:2-104
1e
d4lnfe1
E:2-104
1f
d4lnff1
F:2-104
1g
d4lnfg1
G:2-104
1h
d4lnfh1
H:2-104
1i
d4lnfi1
I:2-104
1j
d4lnfj1
J:4-104
1k
d4lnfk1
K:2-104
1l
d4lnfl1
L:2-104
Fold
:
Glutamine synthetase/guanido kinase
(68)
Superfamily
:
Glutamine synthetase/guanido kinase
(68)
Family
:
automated matches
(18)
Protein domain
:
automated matches
(18)
Bacillus subtilis [TaxId: 1423]
(5)
2a
d4lnfa2
A:105-444
2b
d4lnfb2
B:105-444
2c
d4lnfc2
C:105-444
2d
d4lnfd2
D:105-444
2e
d4lnfe2
E:105-444
2f
d4lnff2
F:105-444
2g
d4lnfg2
G:105-444
2h
d4lnfh2
H:105-444
2i
d4lnfi2
I:105-444
2j
d4lnfj2
J:105-444
2k
d4lnfk2
K:105-444
2l
d4lnfl2
L:105-444
[
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CATH Domains
(0, 0)
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all CATH domains
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Pfam Domains
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