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Getting 'Biological Unit' information from database.
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4LM8
Asym. Unit
Info
Asym.Unit (137 KB)
Biol.Unit 1 (126 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE OUTER MEMBRANE DECAHEME CYTOCHROME MTRC
Authors
:
T. A. Clarke, M. J. Edwards
Date
:
10 Jul 13 (Deposition) - 11 Feb 15 (Release) - 21 Oct 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.80
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Greek Key, C Type Cytochrome Electron Transport, Outer Membrane, Electron Transport
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. J. Edwards, G. F. White, M. Norman, A. Tome-Fernandez, E. Ainsworth L. Shi, J. K. Fredrickson, J. M. Zachara, J. N. Butt, D. J. Richardson, T. A. Clarke
Redox Linked Flavin Sites In Extracellular Decaheme Protein Involved In Microbe-Mineral Electron Transfer.
Sci Rep V. 5 11677 2015
[
close entry info
]
Hetero Components
(4, 24)
Info
All Hetero Components
1a: ACETATE ION (ACTa)
2a: CALCIUM ION (CAa)
2b: CALCIUM ION (CAb)
2c: CALCIUM ION (CAc)
2d: CALCIUM ION (CAd)
2e: CALCIUM ION (CAe)
3a: 1,2-ETHANEDIOL (EDOa)
3b: 1,2-ETHANEDIOL (EDOb)
3c: 1,2-ETHANEDIOL (EDOc)
3d: 1,2-ETHANEDIOL (EDOd)
3e: 1,2-ETHANEDIOL (EDOe)
3f: 1,2-ETHANEDIOL (EDOf)
3g: 1,2-ETHANEDIOL (EDOg)
3h: 1,2-ETHANEDIOL (EDOh)
4a: HEME C (HECa)
4b: HEME C (HECb)
4c: HEME C (HECc)
4d: HEME C (HECd)
4e: HEME C (HECe)
4f: HEME C (HECf)
4g: HEME C (HECg)
4h: HEME C (HECh)
4i: HEME C (HECi)
4j: HEME C (HECj)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACT
1
Ligand/Ion
ACETATE ION
2
CA
5
Ligand/Ion
CALCIUM ION
3
EDO
8
Ligand/Ion
1,2-ETHANEDIOL
4
HEC
10
Ligand/Ion
HEME C
[
close Hetero Component info
]
Sites
(24, 24)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
VAL A:185 , CYS A:186 , CYS A:189 , HIS A:190 , ILE A:196 , ILE A:229 , VAL A:232 , HIS A:233 , TRP A:239 , LYS A:244 , ALA A:249 , GLY A:570 , HEC A:802 , HOH A:961 , HOH A:983 , HOH A:1170 , HOH A:1562
BINDING SITE FOR RESIDUE HEC A 801
02
AC2
SOFTWARE
LYS A:86 , ILE A:196 , TYR A:197 , HIS A:198 , GLN A:199 , ALA A:200 , THR A:205 , CYS A:206 , CYS A:209 , HIS A:210 , PHE A:214 , ARG A:218 , LYS A:220 , HIS A:222 , LEU A:228 , TRP A:239 , GLY A:240 , GLU A:630 , HEC A:801 , HOH A:1005 , HOH A:1035 , HOH A:1441 , HOH A:1809
BINDING SITE FOR RESIDUE HEC A 802
03
AC3
SOFTWARE
SER A:102 , ILE A:180 , VAL A:181 , SER A:226 , ILE A:229 , HIS A:230 , HIS A:233 , VAL A:253 , ASP A:255 , CYS A:257 , CYS A:260 , HIS A:261 , ASN A:272 , TRP A:273 , ILE A:276 , VAL A:281 , HIS A:319 , HEC A:804 , HOH A:905 , HOH A:929 , HOH A:953 , HOH A:981 , HOH A:1077 , HOH A:1797
BINDING SITE FOR RESIDUE HEC A 803
04
AC4
SOFTWARE
ASP A:255 , CYS A:282 , SER A:284 , CYS A:285 , HIS A:286 , LEU A:318 , HIS A:319 , LYS A:322 , HEC A:803 , HEC A:805 , HOH A:1357
BINDING SITE FOR RESIDUE HEC A 804
05
AC5
SOFTWARE
THR A:278 , MET A:279 , HIS A:286 , ILE A:289 , PHE A:291 , HIS A:297 , GLN A:300 , ASP A:302 , ASN A:305 , CYS A:306 , CYS A:309 , HIS A:310 , HEC A:804 , HOH A:1097 , HOH A:1573
BINDING SITE FOR RESIDUE HEC A 805
06
AC6
SOFTWARE
CYS A:189 , ASN A:251 , ALA A:495 , CYS A:496 , CYS A:499 , HIS A:500 , PHE A:504 , LEU A:535 , LEU A:560 , LYS A:563 , HIS A:564 , ALA A:568 , LEU A:571 , ILE A:572 , SER A:578 , HEC A:807 , HOH A:1174 , HOH A:1364 , HOH A:1421 , HOH A:1473
BINDING SITE FOR RESIDUE HEC A 806
07
AC7
SOFTWARE
TYR A:389 , PHE A:438 , HIS A:507 , HIS A:512 , CYS A:538 , THR A:540 , CYS A:541 , HIS A:542 , THR A:547 , TYR A:548 , ASN A:552 , LYS A:559 , LYS A:563 , HEC A:806 , HOH A:914 , HOH A:1343 , HOH A:1488 , HOH A:1561
BINDING SITE FOR RESIDUE HEC A 807
08
AC8
SOFTWARE
ARG A:486 , HIS A:487 , SER A:490 , LEU A:535 , GLU A:557 , LEU A:560 , HIS A:561 , HIS A:564 , CYS A:576 , CYS A:579 , HIS A:580 , PHE A:583 , ASN A:584 , HIS A:666 , HEC A:809 , HOH A:902 , HOH A:909
BINDING SITE FOR RESIDUE HEC A 808
09
AC9
SOFTWARE
HIS A:561 , LYS A:589 , THR A:613 , CYS A:614 , CYS A:617 , HIS A:618 , HIS A:659 , HIS A:666 , THR A:667 , HEC A:808 , HEC A:810 , EDO A:821 , HOH A:1204 , HOH A:1820
BINDING SITE FOR RESIDUE HEC A 809
10
BC1
SOFTWARE
THR A:611 , HIS A:618 , TYR A:624 , MET A:625 , VAL A:626 , HIS A:627 , PHE A:635 , CYS A:655 , CYS A:658 , HIS A:659 , HEC A:809 , HOH A:936 , HOH A:988 , HOH A:1103 , HOH A:1820
BINDING SITE FOR RESIDUE HEC A 810
11
BC2
SOFTWARE
ASP A:52 , ILE A:53 , GLU A:165 , HOH A:939 , HOH A:970 , HOH A:1451
BINDING SITE FOR RESIDUE CA A 811
12
BC3
SOFTWARE
ASN A:231 , ASN A:234 , LYS A:237 , HOH A:1032
BINDING SITE FOR RESIDUE CA A 812
13
BC4
SOFTWARE
ASP A:472 , GLN A:520 , HOH A:965 , HOH A:995 , HOH A:1063 , HOH A:1087 , HOH A:1490
BINDING SITE FOR RESIDUE CA A 813
14
BC5
SOFTWARE
GLN A:651 , HOH A:1282 , HOH A:1323 , HOH A:1836
BINDING SITE FOR RESIDUE CA A 814
15
BC6
SOFTWARE
GLU A:162 , GLU A:202 , HOH A:1040 , HOH A:1410 , HOH A:1452 , HOH A:1453
BINDING SITE FOR RESIDUE CA A 815
16
BC7
SOFTWARE
GLY A:570 , THR A:654 , HOH A:1229
BINDING SITE FOR RESIDUE EDO A 816
17
BC8
SOFTWARE
ASP A:52 , THR A:54 , PHE A:68 , ASN A:136 , HOH A:996 , HOH A:1404
BINDING SITE FOR RESIDUE EDO A 817
18
BC9
SOFTWARE
GLY A:574 , CYS A:576 , VAL A:663 , ALA A:664 , ASP A:665 , HIS A:666 , HOH A:1505
BINDING SITE FOR RESIDUE EDO A 818
19
CC1
SOFTWARE
GLU A:586 , GLN A:623 , PHE A:656 , HOH A:1107 , HOH A:1126 , HOH A:1319
BINDING SITE FOR RESIDUE EDO A 819
20
CC2
SOFTWARE
SER A:304 , ASN A:305 , ALA A:457 , HOH A:1647
BINDING SITE FOR RESIDUE EDO A 820
21
CC3
SOFTWARE
HIS A:564 , VAL A:565 , TYR A:569 , ILE A:572 , GLY A:573 , HEC A:809
BINDING SITE FOR RESIDUE EDO A 821
22
CC4
SOFTWARE
THR A:326 , VAL A:463 , GLU A:505 , LYS A:508 , HOH A:1098 , HOH A:1366
BINDING SITE FOR RESIDUE EDO A 822
23
CC5
SOFTWARE
ASN A:331 , LYS A:470 , GLU A:503 , HOH A:1362
BINDING SITE FOR RESIDUE EDO A 823
24
CC6
SOFTWARE
MET A:493 , THR A:494 , ALA A:497 , ALA A:502 , VAL A:533 , HOH A:1269 , HOH A:1303
BINDING SITE FOR RESIDUE ACT A 824
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
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[
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
Info
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Sorry, no Info available
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
[
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Atom Selection
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Protein
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All Atoms
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Protein & NOT Site
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Chain A
Asymmetric Unit 1
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Example Commands
Example Command
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select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
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Asym.Unit (137 KB)
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