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4LGY
Asym. Unit
Info
Asym.Unit (252 KB)
Biol.Unit 1 (242 KB)
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(1)
Title
:
IMPORTANCE OF HYDROPHOBIC CAVITIES IN ALLOSTERIC REGULATION OF FORMYLGLYCINAMIDE SYNTHETASE: INSIGHT FROM XENON TRAPPING AND STATISTICAL COUPLING ANALYSIS
Authors
:
A. S. Tanwar, V. D. Goyal, D. Choudhary, S. Panjikar, R. Anand
Date
:
30 Jun 13 (Deposition) - 11 Dec 13 (Release) - 11 Dec 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.48
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Amido Transferase, Ligase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. S. Tanwar, V. D. Goyal, D. Choudhary, S. Panjikar, R. Anand
Importance Of Hydrophobic Cavities In Allosteric Regulation Of Formylglycinamide Synthetase: Insight From Xenon Trappin And Statistical Coupling Analysis
Plos One V. 8 77781 2013
[
close entry info
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Hetero Components
(7, 41)
Info
All Hetero Components
1a: ACETATE ION (ACTa)
1b: ACETATE ION (ACTb)
1c: ACETATE ION (ACTc)
2a: ADENOSINE-5'-DIPHOSPHATE (ADPa)
3a: CHLORIDE ION (CLa)
3b: CHLORIDE ION (CLb)
3c: CHLORIDE ION (CLc)
3d: CHLORIDE ION (CLd)
3e: CHLORIDE ION (CLe)
3f: CHLORIDE ION (CLf)
4a: 2-AMINO-4-(AMINO-3-OXO-PROPYLSULFA... (CYGa)
5a: GLYCEROL (GOLa)
5b: GLYCEROL (GOLb)
5c: GLYCEROL (GOLc)
5d: GLYCEROL (GOLd)
6a: MAGNESIUM ION (MGa)
6b: MAGNESIUM ION (MGb)
6c: MAGNESIUM ION (MGc)
6d: MAGNESIUM ION (MGd)
6e: MAGNESIUM ION (MGe)
6f: MAGNESIUM ION (MGf)
6g: MAGNESIUM ION (MGg)
7a: SULFATE ION (SO4a)
7b: SULFATE ION (SO4b)
7c: SULFATE ION (SO4c)
7d: SULFATE ION (SO4d)
7e: SULFATE ION (SO4e)
7f: SULFATE ION (SO4f)
7g: SULFATE ION (SO4g)
7h: SULFATE ION (SO4h)
7i: SULFATE ION (SO4i)
7j: SULFATE ION (SO4j)
7k: SULFATE ION (SO4k)
7l: SULFATE ION (SO4l)
7m: SULFATE ION (SO4m)
7n: SULFATE ION (SO4n)
7o: SULFATE ION (SO4o)
7p: SULFATE ION (SO4p)
7q: SULFATE ION (SO4q)
7r: SULFATE ION (SO4r)
7s: SULFATE ION (SO4s)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACT
3
Ligand/Ion
ACETATE ION
2
ADP
1
Ligand/Ion
ADENOSINE-5'-DIPHOSPHATE
3
CL
6
Ligand/Ion
CHLORIDE ION
4
CYG
1
Mod. Amino Acid
2-AMINO-4-(AMINO-3-OXO-PROPYLSULFANYLCARBONYL)-BUTYRICACID
5
GOL
4
Ligand/Ion
GLYCEROL
6
MG
7
Ligand/Ion
MAGNESIUM ION
7
SO4
19
Ligand/Ion
SULFATE ION
[
close Hetero Component info
]
Sites
(40, 40)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
34: DC7 (SOFTWARE)
35: DC8 (SOFTWARE)
36: DC9 (SOFTWARE)
37: EC1 (SOFTWARE)
38: EC2 (SOFTWARE)
39: EC3 (SOFTWARE)
40: EC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
VAL A:333 , THR A:386 , GLY A:387 , TYR A:388 , PHE A:389 , LYS A:649 , LEU A:652 , VAL A:653 , GLN A:668 , PRO A:676 , ALA A:678 , ASP A:679 , GLU A:718 , ASN A:722 , SER A:886 , MG A:1302 , MG A:1303 , MG A:1304 , HOH A:1404 , HOH A:1420 , HOH A:1428 , HOH A:1430 , HOH A:1488 , HOH A:1567 , HOH A:1568 , HOH A:1742 , HOH A:1751 , HOH A:2421 , HOH A:2423 , HOH A:2424 , HOH A:2425 , HOH A:2426 , HOH A:2427
BINDING SITE FOR RESIDUE ADP A 1301
02
AC2
SOFTWARE
ASP A:679 , ASN A:722 , ASP A:884 , ADP A:1301 , HOH A:2423 , HOH A:2425
BINDING SITE FOR RESIDUE MG A 1302
03
AC3
SOFTWARE
GLU A:718 , ADP A:1301 , HOH A:1420 , HOH A:2422 , HOH A:2424 , HOH A:2427
BINDING SITE FOR RESIDUE MG A 1303
04
AC4
SOFTWARE
ADP A:1301 , HOH A:1404 , HOH A:1428 , HOH A:2421 , HOH A:2426
BINDING SITE FOR RESIDUE MG A 1304
05
AC5
SOFTWARE
HIS A:216 , GLY A:504 , ALA A:505 , LYS A:776 , HOH A:2093
BINDING SITE FOR RESIDUE SO4 A 1305
06
AC6
SOFTWARE
HIS A:216 , THR A:295 , HIS A:296 , ASN A:297 , HIS A:298 , SER A:778 , HOH A:1692 , HOH A:1817 , HOH A:2004 , HOH A:2786 , HOH A:2821
BINDING SITE FOR RESIDUE SO4 A 1306
07
AC7
SOFTWARE
TYR A:690 , ARG A:812 , LYS A:1228 , VAL A:1229 , HOH A:1553 , HOH A:1813 , HOH A:1962 , HOH A:2338 , HOH A:2829
BINDING SITE FOR RESIDUE SO4 A 1307
08
AC8
SOFTWARE
PRO A:356 , GLU A:357 , ARG A:358 , HOH A:2057 , HOH A:2091 , HOH A:2140
BINDING SITE FOR RESIDUE SO4 A 1308
09
AC9
SOFTWARE
PRO A:1040 , LYS A:1041 , HIS A:1086 , HOH A:1635 , HOH A:2067 , HOH A:2431 , HOH A:2508 , HOH A:2550
BINDING SITE FOR RESIDUE SO4 A 1309
10
BC1
SOFTWARE
LYS A:833 , HIS A:835 , ARG A:858 , HOH A:1865 , HOH A:2165 , HOH A:2525
BINDING SITE FOR RESIDUE SO4 A 1310
11
BC2
SOFTWARE
TRP A:305 , ARG A:1159 , ARG A:1164 , HOH A:1460 , HOH A:1505 , HOH A:2500 , HOH A:2546 , HOH A:2561 , HOH A:2580 , HOH A:2685
BINDING SITE FOR RESIDUE SO4 A 1311
12
BC3
SOFTWARE
HIS A:1086 , ARG A:1126 , PRO A:1127 , GLN A:1128 , THR A:1129 , HOH A:1709 , HOH A:2460 , HOH A:2537 , HOH A:2565 , HOH A:2951
BINDING SITE FOR RESIDUE SO4 A 1312
13
BC4
SOFTWARE
GLN A:1176 , GLY A:1184 , MET A:1185 , VAL A:1186 , HOH A:1703 , HOH A:1839 , HOH A:2554 , HOH A:2610 , HOH A:2706
BINDING SITE FOR RESIDUE SO4 A 1313
14
BC5
SOFTWARE
ALA A:911 , HIS A:953 , HOH A:1608 , HOH A:1646 , HOH A:1672
BINDING SITE FOR RESIDUE SO4 A 1314
15
BC6
SOFTWARE
GLN A:767 , ASP A:859 , VAL A:860 , ALA A:861 , HOH A:1969
BINDING SITE FOR RESIDUE SO4 A 1315
16
BC7
SOFTWARE
GLN A:54 , PHE A:1112 , HIS A:1114 , HOH A:1859 , HOH A:1864 , HOH A:2215 , HOH A:2699
BINDING SITE FOR RESIDUE SO4 A 1316
17
BC8
SOFTWARE
LYS A:196 , ASN A:1113 , ARG A:1115 , HOH A:1769
BINDING SITE FOR RESIDUE SO4 A 1317
18
BC9
SOFTWARE
ASN A:1251 , ARG A:1253 , HOH A:2255 , HOH A:2418 , HOH A:2552
BINDING SITE FOR RESIDUE SO4 A 1318
19
CC1
SOFTWARE
SER A:12 , ALA A:13 , PHE A:14 , ASN A:998 , HIS A:1161 , HOH A:1759 , HOH A:2430
BINDING SITE FOR RESIDUE SO4 A 1319
20
CC2
SOFTWARE
THR A:632 , ILE A:633 , HOH A:1648 , HOH A:1716 , HOH A:2301 , HOH A:2398
BINDING SITE FOR RESIDUE SO4 A 1320
21
CC3
SOFTWARE
HIS A:68 , THR A:69 , HOH A:2680
BINDING SITE FOR RESIDUE SO4 A 1321
22
CC4
SOFTWARE
SER A:-1 , ARG A:-3 , GLY A:-2 , HIS A:152 , HOH A:2548 , HOH A:2599
BINDING SITE FOR RESIDUE SO4 A 1322
23
CC5
SOFTWARE
GLY A:913 , ASP A:914 , ASP A:915 , HOH A:1700 , HOH A:2109
BINDING SITE FOR RESIDUE SO4 A 1323
24
CC6
SOFTWARE
VAL A:432 , THR A:581 , GLU A:582 , GLU A:583 , HOH A:2606 , HOH A:2677
BINDING SITE FOR RESIDUE ACT A 1324
25
CC7
SOFTWARE
ARG A:108 , HOH A:1669 , HOH A:2175 , HOH A:2709 , HOH A:2743 , HOH A:2815
BINDING SITE FOR RESIDUE ACT A 1325
26
CC8
SOFTWARE
THR A:247 , LYS A:638 , TRP A:984 , HOH A:1804 , HOH A:2160 , HOH A:2324 , HOH A:2636 , HOH A:2710
BINDING SITE FOR RESIDUE ACT A 1326
27
CC9
SOFTWARE
SER A:689 , TYR A:691 , VAL A:1229 , THR A:1230 , GLU A:1231 , MG A:1338 , HOH A:1825 , HOH A:2055 , HOH A:2259
BINDING SITE FOR RESIDUE GOL A 1327
28
DC1
SOFTWARE
HIS A:902 , CYS A:903 , GLY A:961 , ARG A:978 , ASP A:1012 , HOH A:1618 , HOH A:1722 , HOH A:2832
BINDING SITE FOR RESIDUE GOL A 1328
29
DC2
SOFTWARE
GLU A:264 , ALA A:267 , PRO A:286 , ASP A:1003 , GLN A:1004 , GLU A:1007 , HOH A:1846 , HOH A:2019 , HOH A:2045 , HOH A:2382 , HOH A:2538 , HOH A:2808
BINDING SITE FOR RESIDUE GOL A 1329
30
DC3
SOFTWARE
ILE A:84 , SER A:85 , PRO A:86 , MET A:136 , ARG A:472 , HOH A:1660 , HOH A:1786 , HOH A:1871 , HOH A:2088
BINDING SITE FOR RESIDUE GOL A 1330
31
DC4
SOFTWARE
GLN A:52 , ALA A:53 , HOH A:2263 , HOH A:2963
BINDING SITE FOR RESIDUE CL A 1331
32
DC5
SOFTWARE
GLU A:1173 , VAL A:1174 , HOH A:2778
BINDING SITE FOR RESIDUE CL A 1332
33
DC6
SOFTWARE
TRP A:1272 , HIS A:1273 , HOH A:1638
BINDING SITE FOR RESIDUE CL A 1333
34
DC7
SOFTWARE
ALA A:1102 , ASN A:1143 , PHE A:1157 , HOH A:1594
BINDING SITE FOR RESIDUE CL A 1334
35
DC8
SOFTWARE
PHE A:1124 , ASN A:1251 , ARG A:1253 , HOH A:1756
BINDING SITE FOR RESIDUE CL A 1335
36
DC9
SOFTWARE
ALA A:384 , LEU A:652 , HOH A:1455 , HOH A:1530
BINDING SITE FOR RESIDUE CL A 1336
37
EC1
SOFTWARE
PHE A:1169 , HOH A:1470 , HOH A:2998 , HOH A:3007
BINDING SITE FOR RESIDUE MG A 1337
38
EC2
SOFTWARE
ALA A:267 , GLU A:1231 , THR A:1232 , GOL A:1327 , HOH A:2055
BINDING SITE FOR RESIDUE MG A 1338
39
EC3
SOFTWARE
PHE A:1112 , ASN A:1113 , HOH A:1632 , HOH A:2204
BINDING SITE FOR RESIDUE MG A 1339
40
EC4
SOFTWARE
GLN A:727 , HIS A:813 , ALA A:875 , PHE A:1226 , HOH A:1990
BINDING SITE FOR RESIDUE MG A 1340
[
close Site info
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
Info
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;
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Sorry, no Info available
[
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
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Sorry, no Info available
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CATH Domains
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Pfam Domains
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Asymmetric Unit 1
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Asym.Unit (252 KB)
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