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4LCW
Biol. Unit 2
Info
Asym.Unit (267 KB)
Biol.Unit 1 (133 KB)
Biol.Unit 2 (135 KB)
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(1)
Title
:
THE STRUCTURE OF HUMAN MAIT TCR IN COMPLEX WITH MR1-K43A-RL-6-ME-7OH
Authors
:
O. Patel, J. Rossjohn
Date
:
24 Jun 13 (Deposition) - 02 Oct 13 (Release) - 20 Nov 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.40
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,B,G,H (1x)
Biol. Unit 2: C,D,E,F (1x)
Keywords
:
Mhc Class I-Related Protein, Mait T Cell Receptor, Vitamin B2 Metabolites, Membrane Protein-Immune System Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
R. Reantragoon, A. J. Corbett, I. G. Sakala, N. A. Gherardin, J. B. Furness, Z. Chen, S. B. Eckle, A. P. Uldrich, R. W. Birkinshaw, O. Patel, L. Kostenko, B. Meehan, K. Kedzierska, L. Liu, D. P. Fairlie, T. H. Hansen, D. I. Godfrey, J. Rossjohn, J. Mccluskey, L. Kjer-Nielse
Antigen-Loaded Mr1 Tetramers Define T Cell Receptor Heterogeneity In Mucosal-Associated Invariant T Cells.
J. Exp. Med. V. 210 2305 2013
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Hetero Components
(1, 1)
Info
All Hetero Components
1a: 1-DEOXY-1-(7-HYDROXY-6-METHYL-2,4-... (1VYa)
1b: 1-DEOXY-1-(7-HYDROXY-6-METHYL-2,4-... (1VYb)
2a: GLYCEROL (GOLa)
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No.
Name
Count
Type
Full Name
1
1VY
1
Ligand/Ion
1-DEOXY-1-(7-HYDROXY-6-METHYL-2,4-DIOXO-3,4-DIHYDROPTERIDIN-8(2H)-YL)-D-RIBITOL
2
GOL
-1
Ligand/Ion
GLYCEROL
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC3 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLU A:180 , PRO A:181 , GLY A:204 , GLN D:19
BINDING SITE FOR RESIDUE GOL A 301
2
AC3
SOFTWARE
TYR C:7 , ARG C:9 , SER C:24 , TYR C:62 , LEU C:66 , TRP C:69 , ARG C:94 , ILE C:96 , TYR C:152 , GLN C:153 , TRP C:156 , HOH C:401 , HOH C:407 , HOH C:408 , TYR D:95 , HOH D:401
BINDING SITE FOR RESIDUE 1VY C 301
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(4, 14)
Info
All SCOP Domains
1a: SCOP_d4lcwa2 (A:179-269)
1b: SCOP_d4lcwc2 (C:179-269)
1c: SCOP_d4lcwd1 (D:1-110)
1d: SCOP_d4lcwe1 (E:2-116)
1e: SCOP_d4lcwe2 (E:117-244)
1f: SCOP_d4lcwg1 (G:1-110)
1g: SCOP_d4lcwh1 (H:3-116)
1h: SCOP_d4lcwh2 (H:117-242)
2a: SCOP_d4lcwd2 (D:111-200)
2b: SCOP_d4lcwg2 (G:111-198)
3a: SCOP_d4lcwb_ (B:)
3b: SCOP_d4lcwf_ (F:)
4a: SCOP_d4lcwa1 (A:0-178)
4b: SCOP_d4lcwc1 (C:0-178)
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)
Protein Domains
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)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
Immunoglobulin
(5995)
Family
:
automated matches
(864)
Protein domain
:
automated matches
(864)
Human (Homo sapiens) [TaxId: 9606]
(448)
1a
d4lcwa2
A:179-269
1b
d4lcwc2
C:179-269
1c
d4lcwd1
D:1-110
1d
d4lcwe1
E:2-116
1e
d4lcwe2
E:117-244
1f
d4lcwg1
G:1-110
1g
d4lcwh1
H:3-116
1h
d4lcwh2
H:117-242
Family
:
C1 set domains (antibody constant domain-like)
(3013)
Protein domain
:
automated matches
(652)
Human (Homo sapiens) [TaxId: 9606]
(334)
2a
d4lcwd2
D:111-200
2b
d4lcwg2
G:111-198
Protein domain
:
beta2-microglobulin
(530)
Human (Homo sapiens) [TaxId: 9606]
(350)
3a
d4lcwb_
B:
3b
d4lcwf_
F:
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
MHC antigen-recognition domain
(585)
Superfamily
:
MHC antigen-recognition domain
(585)
Family
:
automated matches
(52)
Protein domain
:
automated matches
(52)
Human (Homo sapiens) [TaxId: 9606]
(14)
4a
d4lcwa1
A:0-178
4b
d4lcwc1
C:0-178
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CATH Domains
(0, 0)
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Pfam Domains
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Asymmetric Unit 1
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Asym.Unit (267 KB)
Header - Asym.Unit
Biol.Unit 1 (133 KB)
Header - Biol.Unit 1
Biol.Unit 2 (135 KB)
Header - Biol.Unit 2
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