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4LCK
Biol. Unit 2
Info
Asym.Unit (391 KB)
Biol.Unit 1 (191 KB)
Biol.Unit 2 (192 KB)
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(1)
Title
:
CO-CRYSTAL STRUCTURE OF A T-BOX RIBOSWITCH STEM I DOMAIN IN COMPLEX WITH ITS COGNATE TRNA
Authors
:
J. Zhang, A. R. Ferre-D'Amare
Date
:
21 Jun 13 (Deposition) - 31 Jul 13 (Release) - 23 Nov 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.20
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B,C (1x)
Biol. Unit 2: D,E,F (1x)
Keywords
:
Riboswitch Mrna, Trna-Mrna Complex, Gene Expression Regulation, Bacteria, Ribosomal Protein-Rna Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. Zhang, A. R. Ferre-D'Amare
Co-Crystal Structure Of A T-Box Riboswitch Stem I Domain In Complex With Its Cognate Trna.
Nature V. 500 363 2013
[
close entry info
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Hetero Components
(1, 2)
Info
All Hetero Components
1a: MAGNESIUM ION (MGa)
1b: MAGNESIUM ION (MGb)
1c: MAGNESIUM ION (MGc)
1d: MAGNESIUM ION (MGd)
1e: MAGNESIUM ION (MGe)
1f: MAGNESIUM ION (MGf)
1g: MAGNESIUM ION (MGg)
2a: SELENOMETHIONINE (MSEa)
2b: SELENOMETHIONINE (MSEb)
2c: SELENOMETHIONINE (MSEc)
2d: SELENOMETHIONINE (MSEd)
3a: STRONTIUM ION (SRa)
3aa: STRONTIUM ION (SRaa)
3ab: STRONTIUM ION (SRab)
3ac: STRONTIUM ION (SRac)
3ad: STRONTIUM ION (SRad)
3ae: STRONTIUM ION (SRae)
3af: STRONTIUM ION (SRaf)
3ag: STRONTIUM ION (SRag)
3ah: STRONTIUM ION (SRah)
3ai: STRONTIUM ION (SRai)
3aj: STRONTIUM ION (SRaj)
3ak: STRONTIUM ION (SRak)
3al: STRONTIUM ION (SRal)
3am: STRONTIUM ION (SRam)
3an: STRONTIUM ION (SRan)
3ao: STRONTIUM ION (SRao)
3ap: STRONTIUM ION (SRap)
3aq: STRONTIUM ION (SRaq)
3ar: STRONTIUM ION (SRar)
3as: STRONTIUM ION (SRas)
3at: STRONTIUM ION (SRat)
3au: STRONTIUM ION (SRau)
3av: STRONTIUM ION (SRav)
3aw: STRONTIUM ION (SRaw)
3ax: STRONTIUM ION (SRax)
3ay: STRONTIUM ION (SRay)
3az: STRONTIUM ION (SRaz)
3b: STRONTIUM ION (SRb)
3ba: STRONTIUM ION (SRba)
3bb: STRONTIUM ION (SRbb)
3bc: STRONTIUM ION (SRbc)
3bd: STRONTIUM ION (SRbd)
3be: STRONTIUM ION (SRbe)
3bf: STRONTIUM ION (SRbf)
3bg: STRONTIUM ION (SRbg)
3bh: STRONTIUM ION (SRbh)
3bi: STRONTIUM ION (SRbi)
3bj: STRONTIUM ION (SRbj)
3bk: STRONTIUM ION (SRbk)
3bl: STRONTIUM ION (SRbl)
3bm: STRONTIUM ION (SRbm)
3bn: STRONTIUM ION (SRbn)
3bo: STRONTIUM ION (SRbo)
3bp: STRONTIUM ION (SRbp)
3bq: STRONTIUM ION (SRbq)
3br: STRONTIUM ION (SRbr)
3bs: STRONTIUM ION (SRbs)
3bt: STRONTIUM ION (SRbt)
3bu: STRONTIUM ION (SRbu)
3bv: STRONTIUM ION (SRbv)
3bw: STRONTIUM ION (SRbw)
3bx: STRONTIUM ION (SRbx)
3by: STRONTIUM ION (SRby)
3bz: STRONTIUM ION (SRbz)
3c: STRONTIUM ION (SRc)
3ca: STRONTIUM ION (SRca)
3d: STRONTIUM ION (SRd)
3e: STRONTIUM ION (SRe)
3f: STRONTIUM ION (SRf)
3g: STRONTIUM ION (SRg)
3h: STRONTIUM ION (SRh)
3i: STRONTIUM ION (SRi)
3j: STRONTIUM ION (SRj)
3k: STRONTIUM ION (SRk)
3l: STRONTIUM ION (SRl)
3m: STRONTIUM ION (SRm)
3n: STRONTIUM ION (SRn)
3o: STRONTIUM ION (SRo)
3p: STRONTIUM ION (SRp)
3q: STRONTIUM ION (SRq)
3r: STRONTIUM ION (SRr)
3s: STRONTIUM ION (SRs)
3t: STRONTIUM ION (SRt)
3u: STRONTIUM ION (SRu)
3v: STRONTIUM ION (SRv)
3w: STRONTIUM ION (SRw)
3x: STRONTIUM ION (SRx)
3y: STRONTIUM ION (SRy)
3z: STRONTIUM ION (SRz)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
MG
-1
Ligand/Ion
MAGNESIUM ION
2
MSE
2
Mod. Amino Acid
SELENOMETHIONINE
3
SR
-1
Ligand/Ion
STRONTIUM ION
[
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Sites
(26, 26)
Info
All Sites
01: DC8 (SOFTWARE)
02: DC9 (SOFTWARE)
03: EC1 (SOFTWARE)
04: EC2 (SOFTWARE)
05: EC3 (SOFTWARE)
06: EC4 (SOFTWARE)
07: EC5 (SOFTWARE)
08: EC6 (SOFTWARE)
09: EC7 (SOFTWARE)
10: EC8 (SOFTWARE)
11: EC9 (SOFTWARE)
12: FC1 (SOFTWARE)
13: FC2 (SOFTWARE)
14: FC3 (SOFTWARE)
15: FC4 (SOFTWARE)
16: FC5 (SOFTWARE)
17: FC6 (SOFTWARE)
18: FC7 (SOFTWARE)
19: FC8 (SOFTWARE)
20: FC9 (SOFTWARE)
21: GC1 (SOFTWARE)
22: GC2 (SOFTWARE)
23: GC3 (SOFTWARE)
24: GC4 (SOFTWARE)
25: GC5 (SOFTWARE)
26: GC6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
DC8
SOFTWARE
G E:52 , HOH E:201 , HOH E:204
BINDING SITE FOR RESIDUE SR E 101
02
DC9
SOFTWARE
G E:44
BINDING SITE FOR RESIDUE SR E 102
03
EC1
SOFTWARE
G E:38
BINDING SITE FOR RESIDUE SR E 103
04
EC2
SOFTWARE
G E:39 , U E:40
BINDING SITE FOR RESIDUE SR E 109
05
EC3
SOFTWARE
G E:7 , G E:48
BINDING SITE FOR RESIDUE SR E 110
06
EC4
SOFTWARE
U E:11 , U E:12
BINDING SITE FOR RESIDUE SR E 111
07
EC5
SOFTWARE
C E:30 , U E:32
BINDING SITE FOR RESIDUE SR E 112
08
EC6
SOFTWARE
A E:9 , G E:10 , U E:11
BINDING SITE FOR RESIDUE SR E 114
09
EC7
SOFTWARE
U E:19 , G E:21
BINDING SITE FOR RESIDUE SR E 115
10
EC8
SOFTWARE
A E:14 , A E:20 , G E:21
BINDING SITE FOR RESIDUE MG E 116
11
EC9
SOFTWARE
A F:39 , A F:60 , C F:102 , SR F:219
BINDING SITE FOR RESIDUE SR F 201
12
FC1
SOFTWARE
G F:97
BINDING SITE FOR RESIDUE SR F 202
13
FC2
SOFTWARE
G F:43 , HOH F:301
BINDING SITE FOR RESIDUE SR F 203
14
FC3
SOFTWARE
U F:55 , G F:59
BINDING SITE FOR RESIDUE SR F 204
15
FC4
SOFTWARE
A F:11
BINDING SITE FOR RESIDUE SR F 205
16
FC5
SOFTWARE
G F:59
BINDING SITE FOR RESIDUE SR F 206
17
FC6
SOFTWARE
G F:45 , A F:46
BINDING SITE FOR RESIDUE SR F 207
18
FC7
SOFTWARE
G F:43
BINDING SITE FOR RESIDUE SR F 209
19
FC8
SOFTWARE
U F:37 , G F:38 , G F:70
BINDING SITE FOR RESIDUE SR F 210
20
FC9
SOFTWARE
U F:50 , A F:51
BINDING SITE FOR RESIDUE SR F 215
21
GC1
SOFTWARE
G F:18
BINDING SITE FOR RESIDUE SR F 216
22
GC2
SOFTWARE
G F:74 , U F:75
BINDING SITE FOR RESIDUE SR F 217
23
GC3
SOFTWARE
A F:71 , U F:72
BINDING SITE FOR RESIDUE SR F 218
24
GC4
SOFTWARE
G F:38 , A F:39 , A F:46 , C F:102 , SR F:201
BINDING SITE FOR RESIDUE SR F 219
25
GC5
SOFTWARE
U F:21
BINDING SITE FOR RESIDUE MG F 220
26
GC6
SOFTWARE
A F:54
BINDING SITE FOR RESIDUE MG F 221
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(, 0)
Info
All PROSITE Patterns/Profiles
;
View:
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End label:
Sorry, no Info available
[
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(0, 0)
Info
All SCOP Domains
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Sorry, no Info available
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain D
Chain E
Chain F
Asymmetric Unit 1
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Asym.Unit (391 KB)
Header - Asym.Unit
Biol.Unit 1 (191 KB)
Header - Biol.Unit 1
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