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4LCK
Biol. Unit 1
Info
Asym.Unit (391 KB)
Biol.Unit 1 (191 KB)
Biol.Unit 2 (192 KB)
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(1)
Title
:
CO-CRYSTAL STRUCTURE OF A T-BOX RIBOSWITCH STEM I DOMAIN IN COMPLEX WITH ITS COGNATE TRNA
Authors
:
J. Zhang, A. R. Ferre-D'Amare
Date
:
21 Jun 13 (Deposition) - 31 Jul 13 (Release) - 23 Nov 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.20
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B,C (1x)
Biol. Unit 2: D,E,F (1x)
Keywords
:
Riboswitch Mrna, Trna-Mrna Complex, Gene Expression Regulation, Bacteria, Ribosomal Protein-Rna Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. Zhang, A. R. Ferre-D'Amare
Co-Crystal Structure Of A T-Box Riboswitch Stem I Domain In Complex With Its Cognate Trna.
Nature V. 500 363 2013
[
close entry info
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Hetero Components
(1, 2)
Info
All Hetero Components
1a: MAGNESIUM ION (MGa)
1b: MAGNESIUM ION (MGb)
1c: MAGNESIUM ION (MGc)
1d: MAGNESIUM ION (MGd)
1e: MAGNESIUM ION (MGe)
1f: MAGNESIUM ION (MGf)
1g: MAGNESIUM ION (MGg)
2a: SELENOMETHIONINE (MSEa)
2b: SELENOMETHIONINE (MSEb)
2c: SELENOMETHIONINE (MSEc)
2d: SELENOMETHIONINE (MSEd)
3a: STRONTIUM ION (SRa)
3aa: STRONTIUM ION (SRaa)
3ab: STRONTIUM ION (SRab)
3ac: STRONTIUM ION (SRac)
3ad: STRONTIUM ION (SRad)
3ae: STRONTIUM ION (SRae)
3af: STRONTIUM ION (SRaf)
3ag: STRONTIUM ION (SRag)
3ah: STRONTIUM ION (SRah)
3ai: STRONTIUM ION (SRai)
3aj: STRONTIUM ION (SRaj)
3ak: STRONTIUM ION (SRak)
3al: STRONTIUM ION (SRal)
3am: STRONTIUM ION (SRam)
3an: STRONTIUM ION (SRan)
3ao: STRONTIUM ION (SRao)
3ap: STRONTIUM ION (SRap)
3aq: STRONTIUM ION (SRaq)
3ar: STRONTIUM ION (SRar)
3as: STRONTIUM ION (SRas)
3at: STRONTIUM ION (SRat)
3au: STRONTIUM ION (SRau)
3av: STRONTIUM ION (SRav)
3aw: STRONTIUM ION (SRaw)
3ax: STRONTIUM ION (SRax)
3ay: STRONTIUM ION (SRay)
3az: STRONTIUM ION (SRaz)
3b: STRONTIUM ION (SRb)
3ba: STRONTIUM ION (SRba)
3bb: STRONTIUM ION (SRbb)
3bc: STRONTIUM ION (SRbc)
3bd: STRONTIUM ION (SRbd)
3be: STRONTIUM ION (SRbe)
3bf: STRONTIUM ION (SRbf)
3bg: STRONTIUM ION (SRbg)
3bh: STRONTIUM ION (SRbh)
3bi: STRONTIUM ION (SRbi)
3bj: STRONTIUM ION (SRbj)
3bk: STRONTIUM ION (SRbk)
3bl: STRONTIUM ION (SRbl)
3bm: STRONTIUM ION (SRbm)
3bn: STRONTIUM ION (SRbn)
3bo: STRONTIUM ION (SRbo)
3bp: STRONTIUM ION (SRbp)
3bq: STRONTIUM ION (SRbq)
3br: STRONTIUM ION (SRbr)
3bs: STRONTIUM ION (SRbs)
3bt: STRONTIUM ION (SRbt)
3bu: STRONTIUM ION (SRbu)
3bv: STRONTIUM ION (SRbv)
3bw: STRONTIUM ION (SRbw)
3bx: STRONTIUM ION (SRbx)
3by: STRONTIUM ION (SRby)
3bz: STRONTIUM ION (SRbz)
3c: STRONTIUM ION (SRc)
3ca: STRONTIUM ION (SRca)
3d: STRONTIUM ION (SRd)
3e: STRONTIUM ION (SRe)
3f: STRONTIUM ION (SRf)
3g: STRONTIUM ION (SRg)
3h: STRONTIUM ION (SRh)
3i: STRONTIUM ION (SRi)
3j: STRONTIUM ION (SRj)
3k: STRONTIUM ION (SRk)
3l: STRONTIUM ION (SRl)
3m: STRONTIUM ION (SRm)
3n: STRONTIUM ION (SRn)
3o: STRONTIUM ION (SRo)
3p: STRONTIUM ION (SRp)
3q: STRONTIUM ION (SRq)
3r: STRONTIUM ION (SRr)
3s: STRONTIUM ION (SRs)
3t: STRONTIUM ION (SRt)
3u: STRONTIUM ION (SRu)
3v: STRONTIUM ION (SRv)
3w: STRONTIUM ION (SRw)
3x: STRONTIUM ION (SRx)
3y: STRONTIUM ION (SRy)
3z: STRONTIUM ION (SRz)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
MG
-1
Ligand/Ion
MAGNESIUM ION
2
MSE
2
Mod. Amino Acid
SELENOMETHIONINE
3
SR
-1
Ligand/Ion
STRONTIUM ION
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Sites
(34, 34)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
34: DC7 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HOH B:201 , HOH B:204
BINDING SITE FOR RESIDUE SR B 102
02
AC2
SOFTWARE
U B:54
BINDING SITE FOR RESIDUE SR B 103
03
AC3
SOFTWARE
G B:69 , SR B:114
BINDING SITE FOR RESIDUE SR B 104
04
AC4
SOFTWARE
U B:19
BINDING SITE FOR RESIDUE SR B 105
05
AC5
SOFTWARE
G B:7 , G B:48
BINDING SITE FOR RESIDUE SR B 109
06
AC6
SOFTWARE
G B:44
BINDING SITE FOR RESIDUE SR B 111
07
AC7
SOFTWARE
G B:38 , HOH B:205 , HOH B:206
BINDING SITE FOR RESIDUE SR B 112
08
AC8
SOFTWARE
SR B:104
BINDING SITE FOR RESIDUE SR B 114
09
AC9
SOFTWARE
C B:62 , G B:63
BINDING SITE FOR RESIDUE SR B 115
10
BC1
SOFTWARE
A B:20 , G B:45
BINDING SITE FOR RESIDUE SR B 116
11
BC2
SOFTWARE
G B:50 , G B:51
BINDING SITE FOR RESIDUE SR B 117
12
BC3
SOFTWARE
G B:63
BINDING SITE FOR RESIDUE SR B 118
13
BC4
SOFTWARE
U B:31 , U B:32
BINDING SITE FOR RESIDUE SR B 119
14
BC5
SOFTWARE
G B:43 , G B:44
BINDING SITE FOR RESIDUE SR B 120
15
BC6
SOFTWARE
G B:63
BINDING SITE FOR RESIDUE SR B 121
16
BC7
SOFTWARE
A B:9 , G B:10
BINDING SITE FOR RESIDUE SR B 122
17
BC8
SOFTWARE
C B:27 , G B:42
BINDING SITE FOR RESIDUE SR B 123
18
BC9
SOFTWARE
G C:59 , HOH C:304 , HOH C:305 , HOH C:306
BINDING SITE FOR RESIDUE SR C 201
19
CC1
SOFTWARE
G C:97
BINDING SITE FOR RESIDUE SR C 202
20
CC2
SOFTWARE
G C:12
BINDING SITE FOR RESIDUE SR C 203
21
CC3
SOFTWARE
HOH C:308
BINDING SITE FOR RESIDUE SR C 204
22
CC4
SOFTWARE
U C:55 , G C:59
BINDING SITE FOR RESIDUE SR C 205
23
CC5
SOFTWARE
G C:18
BINDING SITE FOR RESIDUE SR C 206
24
CC6
SOFTWARE
G C:28 , U C:30
BINDING SITE FOR RESIDUE SR C 210
25
CC7
SOFTWARE
A C:39 , C C:102
BINDING SITE FOR RESIDUE SR C 211
26
CC8
SOFTWARE
G C:43 , HOH C:301 , HOH C:302 , HOH C:303
BINDING SITE FOR RESIDUE SR C 213
27
CC9
SOFTWARE
G C:43
BINDING SITE FOR RESIDUE SR C 214
28
DC1
SOFTWARE
U C:37 , G C:38 , G C:70
BINDING SITE FOR RESIDUE SR C 216
29
DC2
SOFTWARE
G C:74
BINDING SITE FOR RESIDUE SR C 217
30
DC3
SOFTWARE
U C:4 , G C:5
BINDING SITE FOR RESIDUE SR C 218
31
DC4
SOFTWARE
G C:2
BINDING SITE FOR RESIDUE SR C 219
32
DC5
SOFTWARE
A C:26
BINDING SITE FOR RESIDUE SR C 221
33
DC6
SOFTWARE
G C:20
BINDING SITE FOR RESIDUE MG C 224
34
DC7
SOFTWARE
G C:28 , A C:29
BINDING SITE FOR RESIDUE MG C 225
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
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Label:
Sorry, no Info available
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PROSITE Patterns/Profiles
(, 0)
Info
All PROSITE Patterns/Profiles
;
View:
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Label:
End label:
Sorry, no Info available
[
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
Select:
Label:
Sorry, no Info available
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CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
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]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
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]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Chain C
Asymmetric Unit 1
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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select non-helix/non-sheet protein parts
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show SS bonds with a radius of 100 units (=0.4Å)
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Asym.Unit (391 KB)
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Biol.Unit 1 (191 KB)
Header - Biol.Unit 1
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