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4LBY
Asym. Unit
Info
Asym.Unit (139 KB)
Biol.Unit 1 (134 KB)
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(1)
Title
:
IDENTIFYING LIGAND BINDING HOT SPOTS IN PROTEINS USING BROMINATED FRAGMENTS
Authors
:
M. K. Groftehauge, M. Therkelsen, R. Taaning, T. Skrydstrup, J. P. Mort P. Nissen
Date
:
21 Jun 13 (Deposition) - 11 Sep 13 (Release) - 11 Sep 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.69
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Gtpase, , Protein Binding
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. K. Grftehauge, M. O. Therkelsen, R. Taaning, T. Skrydstrup, J. P. Morth, P. Nissen
Identifying Ligand-Binding Hot Spots In Proteins Using Brominated Fragments.
Acta Crystallogr. , Sect. F V. 69 1060 2013
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Hetero Components
(4, 9)
Info
All Hetero Components
1a: PHOSPHOAMINOPHOSPHONIC ACID-GUANYL... (GNPa)
2a: MAGNESIUM ION (MGa)
3a: AMMONIUM ION (NH4a)
4a: SULFATE ION (SO4a)
4b: SULFATE ION (SO4b)
4c: SULFATE ION (SO4c)
4d: SULFATE ION (SO4d)
4e: SULFATE ION (SO4e)
4f: SULFATE ION (SO4f)
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Label:
No.
Name
Count
Type
Full Name
1
GNP
1
Ligand/Ion
PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER
2
MG
1
Ligand/Ion
MAGNESIUM ION
3
NH4
1
Ligand/Ion
AMMONIUM ION
4
SO4
6
Ligand/Ion
SULFATE ION
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Sites
(9, 9)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
9: AC9 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
VAL A:20 , ASP A:21 , HIS A:22 , GLY A:23 , LYS A:24 , THR A:25 , THR A:26 , TYR A:47 , ILE A:61 , THR A:62 , GLY A:84 , ASN A:136 , LYS A:137 , ASP A:139 , MET A:140 , SER A:174 , ALA A:175 , LEU A:176 , GLN A:354 , MG A:502 , HOH A:601 , HOH A:628 , HOH A:657 , HOH A:662
BINDING SITE FOR RESIDUE GNP A 501
2
AC2
SOFTWARE
THR A:25 , THR A:62 , GNP A:501 , HOH A:657 , HOH A:662
BINDING SITE FOR RESIDUE MG A 502
3
AC3
SOFTWARE
ILE A:50 , ASP A:51 , GLU A:56 , THR A:62 , ASN A:64 , HOH A:602
BINDING SITE FOR RESIDUE NH4 A 503
4
AC4
SOFTWARE
MET A:113 , ARG A:117
BINDING SITE FOR RESIDUE SO4 A 504
5
AC5
SOFTWARE
ARG A:59 , HIS A:85
BINDING SITE FOR RESIDUE SO4 A 505
6
AC6
SOFTWARE
LYS A:248 , ARG A:291
BINDING SITE FOR RESIDUE SO4 A 506
7
AC7
SOFTWARE
ARG A:330 , HIS A:331 , THR A:332 , ARG A:393
BINDING SITE FOR RESIDUE SO4 A 507
8
AC8
SOFTWARE
ARG A:57 , GLY A:358 , HOH A:675
BINDING SITE FOR RESIDUE SO4 A 508
9
AC9
SOFTWARE
GLN A:181 , ARG A:184
BINDING SITE FOR RESIDUE SO4 A 509
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(3, 3)
Info
All SCOP Domains
1a: SCOP_d4lbya3 (A:313-405)
2a: SCOP_d4lbya2 (A:213-312)
3a: SCOP_d4lbya1 (A:5-212)
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Classes
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Protein Domains
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Organisms
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(
)
Class
:
All beta proteins
(24004)
Fold
:
Elongation factor/aminomethyltransferase common domain
(82)
Superfamily
:
EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
(67)
Family
:
automated matches
(19)
Protein domain
:
automated matches
(19)
Thermus thermophilus [TaxId: 274]
(6)
1a
d4lbya3
A:313-405
Fold
:
Reductase/isomerase/elongation factor common domain
(381)
Superfamily
:
Translation proteins
(218)
Family
:
automated matches
(26)
Protein domain
:
automated matches
(26)
Thermus thermophilus [TaxId: 274]
(6)
2a
d4lbya2
A:213-312
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Superfamily
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Family
:
G proteins
(693)
Protein domain
:
automated matches
(173)
Thermus thermophilus [TaxId: 274]
(6)
3a
d4lbya1
A:5-212
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CATH Domains
(0, 0)
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all CATH domains
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Pfam Domains
(0, 0)
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Chain A
Asymmetric Unit 1
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Asym.Unit (139 KB)
Header - Asym.Unit
Biol.Unit 1 (134 KB)
Header - Biol.Unit 1
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