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4LBW
Biol. Unit 1
Info
Asym.Unit (148 KB)
Biol.Unit 1 (142 KB)
Biol.Unit 2 (280 KB)
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(1)
Title
:
IDENTIFYING LIGAND BINDING HOT SPOTS IN PROTEINS USING BROMINATED FRAGMENTS
Authors
:
M. K. Groftehauge, M. Therkelsen, R. Taaning, T. Skrydstrup, J. P. Mort P. Nissen
Date
:
21 Jun 13 (Deposition) - 11 Sep 13 (Release) - 11 Sep 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.74
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Biol. Unit 2: A (2x)
Keywords
:
Gtpase, Plant Protein, Protein Binding
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
M. K. Grftehauge, M. O. Therkelsen, R. Taaning, T. Skrydstrup, J. P. Morth, P. Nissen
Identifying Ligand-Binding Hot Spots In Proteins Using Brominated Fragments.
Acta Crystallogr. , Sect. F V. 69 1060 2013
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Hetero Components
(3, 10)
Info
All Hetero Components
1a: PHOSPHOAMINOPHOSPHONIC ACID-GUANYL... (GNPa)
2a: MAGNESIUM ION (MGa)
3a: AMMONIUM ION (NH4a)
4a: SULFATE ION (SO4a)
4b: SULFATE ION (SO4b)
4c: SULFATE ION (SO4c)
4d: SULFATE ION (SO4d)
4e: SULFATE ION (SO4e)
4f: SULFATE ION (SO4f)
4g: SULFATE ION (SO4g)
4h: SULFATE ION (SO4h)
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Label:
No.
Name
Count
Type
Full Name
1
GNP
1
Ligand/Ion
PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER
2
MG
-1
Ligand/Ion
MAGNESIUM ION
3
NH4
1
Ligand/Ion
AMMONIUM ION
4
SO4
8
Ligand/Ion
SULFATE ION
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Sites
(11, 11)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
VAL A:20 , ASP A:21 , HIS A:22 , GLY A:23 , LYS A:24 , THR A:25 , THR A:26 , TYR A:47 , ILE A:61 , THR A:62 , GLY A:84 , ASN A:136 , LYS A:137 , ASP A:139 , MET A:140 , SER A:174 , ALA A:175 , LEU A:176 , GLN A:354 , MG A:502 , HOH A:602 , HOH A:629 , HOH A:750 , HOH A:783 , HOH A:894 , HOH A:906 , HOH A:907
BINDING SITE FOR RESIDUE GNP A 501
02
AC2
SOFTWARE
THR A:25 , THR A:62 , GNP A:501 , HOH A:602 , HOH A:906
BINDING SITE FOR RESIDUE MG A 502
03
AC3
SOFTWARE
ILE A:50 , ASP A:51 , GLU A:56 , THR A:62 , ASN A:64 , HOH A:601
BINDING SITE FOR RESIDUE NH4 A 503
04
AC4
SOFTWARE
MET A:113 , PRO A:114 , ARG A:117 , HOH A:811 , HOH A:922
BINDING SITE FOR RESIDUE SO4 A 504
05
AC5
SOFTWARE
LYS A:45 , HIS A:273 , ARG A:274 , HOH A:863 , HOH A:911
BINDING SITE FOR RESIDUE SO4 A 505
06
AC6
SOFTWARE
ARG A:59 , HIS A:85 , HOH A:681 , HOH A:838
BINDING SITE FOR RESIDUE SO4 A 506
07
AC7
SOFTWARE
TYR A:130 , PRO A:211 , ARG A:295 , HOH A:656 , HOH A:719 , HOH A:771 , HOH A:774
BINDING SITE FOR RESIDUE SO4 A 507
08
AC8
SOFTWARE
LYS A:248 , ARG A:291 , HOH A:757 , HOH A:934
BINDING SITE FOR RESIDUE SO4 A 508
09
AC9
SOFTWARE
ARG A:330 , HIS A:331 , THR A:332 , ARG A:393
BINDING SITE FOR RESIDUE SO4 A 509
10
BC1
SOFTWARE
ARG A:57 , GLY A:358 , HOH A:664
BINDING SITE FOR RESIDUE SO4 A 510
11
BC2
SOFTWARE
GLN A:181 , ARG A:184 , ASN A:185 , HOH A:819
BINDING SITE FOR RESIDUE SO4 A 511
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(, 0)
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(3, 3)
Info
All SCOP Domains
1a: SCOP_d4lbwa3 (A:313-405)
2a: SCOP_d4lbwa2 (A:213-312)
3a: SCOP_d4lbwa1 (A:3-212)
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Protein Domains
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Organisms
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Class
:
All beta proteins
(24004)
Fold
:
Elongation factor/aminomethyltransferase common domain
(82)
Superfamily
:
EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
(67)
Family
:
automated matches
(19)
Protein domain
:
automated matches
(19)
Thermus thermophilus [TaxId: 274]
(6)
1a
d4lbwa3
A:313-405
Fold
:
Reductase/isomerase/elongation factor common domain
(381)
Superfamily
:
Translation proteins
(218)
Family
:
automated matches
(26)
Protein domain
:
automated matches
(26)
Thermus thermophilus [TaxId: 274]
(6)
2a
d4lbwa2
A:213-312
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Superfamily
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Family
:
G proteins
(693)
Protein domain
:
automated matches
(173)
Thermus thermophilus [TaxId: 274]
(6)
3a
d4lbwa1
A:3-212
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CATH Domains
(0, 0)
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Pfam Domains
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Chain A
Asymmetric Unit 1
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Show PDB file:
Asym.Unit (148 KB)
Header - Asym.Unit
Biol.Unit 1 (142 KB)
Header - Biol.Unit 1
Biol.Unit 2 (280 KB)
Header - Biol.Unit 2
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