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4LBW
Asym. Unit
Info
Asym.Unit (148 KB)
Biol.Unit 1 (142 KB)
Biol.Unit 2 (280 KB)
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(1)
Title
:
IDENTIFYING LIGAND BINDING HOT SPOTS IN PROTEINS USING BROMINATED FRAGMENTS
Authors
:
M. K. Groftehauge, M. Therkelsen, R. Taaning, T. Skrydstrup, J. P. Mort P. Nissen
Date
:
21 Jun 13 (Deposition) - 11 Sep 13 (Release) - 11 Sep 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.74
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Biol. Unit 2: A (2x)
Keywords
:
Gtpase, Plant Protein, Protein Binding
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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)
Reference
:
M. K. Grftehauge, M. O. Therkelsen, R. Taaning, T. Skrydstrup, J. P. Morth, P. Nissen
Identifying Ligand-Binding Hot Spots In Proteins Using Brominated Fragments.
Acta Crystallogr. , Sect. F V. 69 1060 2013
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Hetero Components
(4, 11)
Info
All Hetero Components
1a: PHOSPHOAMINOPHOSPHONIC ACID-GUANYL... (GNPa)
2a: MAGNESIUM ION (MGa)
3a: AMMONIUM ION (NH4a)
4a: SULFATE ION (SO4a)
4b: SULFATE ION (SO4b)
4c: SULFATE ION (SO4c)
4d: SULFATE ION (SO4d)
4e: SULFATE ION (SO4e)
4f: SULFATE ION (SO4f)
4g: SULFATE ION (SO4g)
4h: SULFATE ION (SO4h)
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Label:
No.
Name
Count
Type
Full Name
1
GNP
1
Ligand/Ion
PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER
2
MG
1
Ligand/Ion
MAGNESIUM ION
3
NH4
1
Ligand/Ion
AMMONIUM ION
4
SO4
8
Ligand/Ion
SULFATE ION
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Sites
(11, 11)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
VAL A:20 , ASP A:21 , HIS A:22 , GLY A:23 , LYS A:24 , THR A:25 , THR A:26 , TYR A:47 , ILE A:61 , THR A:62 , GLY A:84 , ASN A:136 , LYS A:137 , ASP A:139 , MET A:140 , SER A:174 , ALA A:175 , LEU A:176 , GLN A:354 , MG A:502 , HOH A:602 , HOH A:629 , HOH A:750 , HOH A:783 , HOH A:894 , HOH A:906 , HOH A:907
BINDING SITE FOR RESIDUE GNP A 501
02
AC2
SOFTWARE
THR A:25 , THR A:62 , GNP A:501 , HOH A:602 , HOH A:906
BINDING SITE FOR RESIDUE MG A 502
03
AC3
SOFTWARE
ILE A:50 , ASP A:51 , GLU A:56 , THR A:62 , ASN A:64 , HOH A:601
BINDING SITE FOR RESIDUE NH4 A 503
04
AC4
SOFTWARE
MET A:113 , PRO A:114 , ARG A:117 , HOH A:811 , HOH A:922
BINDING SITE FOR RESIDUE SO4 A 504
05
AC5
SOFTWARE
LYS A:45 , HIS A:273 , ARG A:274 , HOH A:863 , HOH A:911
BINDING SITE FOR RESIDUE SO4 A 505
06
AC6
SOFTWARE
ARG A:59 , HIS A:85 , HOH A:681 , HOH A:838
BINDING SITE FOR RESIDUE SO4 A 506
07
AC7
SOFTWARE
TYR A:130 , PRO A:211 , ARG A:295 , HOH A:656 , HOH A:719 , HOH A:771 , HOH A:774
BINDING SITE FOR RESIDUE SO4 A 507
08
AC8
SOFTWARE
LYS A:248 , ARG A:291 , HOH A:757 , HOH A:934
BINDING SITE FOR RESIDUE SO4 A 508
09
AC9
SOFTWARE
ARG A:330 , HIS A:331 , THR A:332 , ARG A:393
BINDING SITE FOR RESIDUE SO4 A 509
10
BC1
SOFTWARE
ARG A:57 , GLY A:358 , HOH A:664
BINDING SITE FOR RESIDUE SO4 A 510
11
BC2
SOFTWARE
GLN A:181 , ARG A:184 , ASN A:185 , HOH A:819
BINDING SITE FOR RESIDUE SO4 A 511
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(3, 3)
Info
All SCOP Domains
1a: SCOP_d4lbwa3 (A:313-405)
2a: SCOP_d4lbwa2 (A:213-312)
3a: SCOP_d4lbwa1 (A:3-212)
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Protein Domains
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Organisms
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Class
:
All beta proteins
(24004)
Fold
:
Elongation factor/aminomethyltransferase common domain
(82)
Superfamily
:
EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
(67)
Family
:
automated matches
(19)
Protein domain
:
automated matches
(19)
Thermus thermophilus [TaxId: 274]
(6)
1a
d4lbwa3
A:313-405
Fold
:
Reductase/isomerase/elongation factor common domain
(381)
Superfamily
:
Translation proteins
(218)
Family
:
automated matches
(26)
Protein domain
:
automated matches
(26)
Thermus thermophilus [TaxId: 274]
(6)
2a
d4lbwa2
A:213-312
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Superfamily
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Family
:
G proteins
(693)
Protein domain
:
automated matches
(173)
Thermus thermophilus [TaxId: 274]
(6)
3a
d4lbwa1
A:3-212
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CATH Domains
(0, 0)
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all CATH domains
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Pfam Domains
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Chain A
Asymmetric Unit 1
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Asym.Unit (148 KB)
Header - Asym.Unit
Biol.Unit 1 (142 KB)
Header - Biol.Unit 1
Biol.Unit 2 (280 KB)
Header - Biol.Unit 2
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