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4L80
Asym. Unit
Info
Asym.Unit (376 KB)
Biol.Unit 1 (366 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF CHLOROFLEXUS AURANTIACUS MALYL-COA LYASE IN COMPLEX WITH MAGNESIUM, OXALATE, AND PROPIONYL-COA
Authors
:
J. Zarzycki, C. A. Kerfeld
Date
:
15 Jun 13 (Deposition) - 04 Dec 13 (Release) - 04 Dec 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.01
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B,C,D,E,F (1x)
Keywords
:
Tim Barrel, Lyase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. Zarzycki, C. A. Kerfeld
The Crystal Structures Of The Tri-Functional Chloroflexus Aurantiacus And Bi-Functional Rhodobacter Sphaeroides Malyl-Coa Lyases And Comparison With Cite-Like Superfamily Enzymes And Malate Synthases.
Bmc Struct. Biol. V. 13 28 2013
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Hetero Components
(4, 20)
Info
All Hetero Components
1a: PROPIONYL COENZYME A (1VUa)
1b: PROPIONYL COENZYME A (1VUb)
1c: PROPIONYL COENZYME A (1VUc)
1d: PROPIONYL COENZYME A (1VUd)
1e: PROPIONYL COENZYME A (1VUe)
1f: PROPIONYL COENZYME A (1VUf)
2a: MAGNESIUM ION (MGa)
2b: MAGNESIUM ION (MGb)
2c: MAGNESIUM ION (MGc)
2d: MAGNESIUM ION (MGd)
2e: MAGNESIUM ION (MGe)
2f: MAGNESIUM ION (MGf)
3a: OXALATE ION (OXLa)
3b: OXALATE ION (OXLb)
3c: OXALATE ION (OXLc)
3d: OXALATE ION (OXLd)
3e: OXALATE ION (OXLe)
3f: OXALATE ION (OXLf)
4a: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,... (TRSa)
4b: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,... (TRSb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
1VU
6
Ligand/Ion
PROPIONYL COENZYME A
2
MG
6
Ligand/Ion
MAGNESIUM ION
3
OXL
6
Ligand/Ion
OXALATE ION
4
TRS
2
Ligand/Ion
2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
[
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Sites
(20, 20)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS A:32 , PHE A:33 , LYS A:40 , ILE A:41 , ARG A:44 , ASN A:58 , ARG A:92 , LEU A:274 , PRO A:276 , OXL A:402 , HOH A:579 , HOH A:641 , HOH A:671 , HOH A:712 , HOH A:731 , HOH A:740 , MET C:316 , ASP C:318 , ARG E:44 , 1VU E:401 , HOH E:758
BINDING SITE FOR RESIDUE 1VU A 401
02
AC2
SOFTWARE
ARG A:92 , GLU A:157 , GLY A:181 , PRO A:182 , ALA A:183 , ASP A:184 , PRO A:246 , TRP A:272 , 1VU A:401 , MG A:403 , HOH A:511 , HOH A:740 , ALA C:320
BINDING SITE FOR RESIDUE OXL A 402
03
AC3
SOFTWARE
GLU A:157 , ASP A:184 , OXL A:402 , HOH A:511 , HOH A:740
BINDING SITE FOR RESIDUE MG A 403
04
AC4
SOFTWARE
GLN A:221 , ASP A:222 , HIS A:225 , GLN B:221 , ASP B:222 , HIS B:225 , GLN C:221 , ASP C:222 , HIS C:225
BINDING SITE FOR RESIDUE TRS A 404
05
AC5
SOFTWARE
MET A:316 , ASP A:318 , HOH A:647 , HIS B:32 , PHE B:33 , LYS B:40 , ILE B:41 , ARG B:44 , ALA B:62 , ARG B:92 , ALA B:183 , LEU B:274 , PRO B:276 , OXL B:402 , HOH B:549 , HOH B:597 , HOH B:599 , HOH B:637 , HOH B:745 , HOH B:748
BINDING SITE FOR RESIDUE 1VU B 401
06
AC6
SOFTWARE
ALA A:320 , ARG B:92 , LEU B:155 , GLU B:157 , GLY B:181 , PRO B:182 , ALA B:183 , ASP B:184 , PRO B:246 , TRP B:272 , 1VU B:401 , MG B:403 , HOH B:606 , HOH B:699
BINDING SITE FOR RESIDUE OXL B 402
07
AC7
SOFTWARE
GLU B:157 , ASP B:184 , OXL B:402 , HOH B:606 , HOH B:699
BINDING SITE FOR RESIDUE MG B 403
08
AC8
SOFTWARE
MET B:316 , ASP B:318 , HOH B:710 , HIS C:32 , PHE C:33 , LYS C:40 , ILE C:41 , ALA C:62 , ARG C:92 , LEU C:274 , PRO C:276 , OXL C:402 , HOH C:503 , HOH C:519 , HOH C:595 , HOH C:625 , HOH C:626 , HOH C:637 , HOH C:663 , HOH C:717 , LYS F:50
BINDING SITE FOR RESIDUE 1VU C 401
09
AC9
SOFTWARE
ARG C:92 , GLU C:157 , GLY C:181 , PRO C:182 , ALA C:183 , ASP C:184 , PRO C:246 , TRP C:272 , 1VU C:401 , MG C:403 , HOH C:502 , HOH C:503
BINDING SITE FOR RESIDUE OXL C 402
10
BC1
SOFTWARE
GLU C:157 , ASP C:184 , OXL C:402 , HOH C:502 , HOH C:503
BINDING SITE FOR RESIDUE MG C 403
11
BC2
SOFTWARE
HIS D:32 , PHE D:33 , LYS D:40 , ILE D:41 , ARG D:44 , ASN D:58 , ASP D:61 , ALA D:62 , ARG D:92 , LEU D:274 , PRO D:276 , OXL D:402 , HOH D:517 , HOH D:614 , HOH D:660 , HOH D:663 , HOH D:675 , HOH D:687 , HOH D:715 , HOH D:716 , HOH D:728 , HOH D:761 , HOH D:783 , MET F:311 , MET F:316 , ASP F:318
BINDING SITE FOR RESIDUE 1VU D 401
12
BC3
SOFTWARE
ARG D:92 , LEU D:155 , GLU D:157 , GLY D:181 , PRO D:182 , ALA D:183 , ASP D:184 , PRO D:246 , TRP D:272 , 1VU D:401 , MG D:403 , HOH D:502 , HOH D:517
BINDING SITE FOR RESIDUE OXL D 402
13
BC4
SOFTWARE
GLU D:157 , ASP D:184 , OXL D:402 , HOH D:502 , HOH D:517
BINDING SITE FOR RESIDUE MG D 403
14
BC5
SOFTWARE
GLN D:221 , ASP D:222 , HIS D:225 , GLN E:221 , ASP E:222 , HIS E:225 , GLN F:221 , ASP F:222 , HIS F:225
BINDING SITE FOR RESIDUE TRS D 404
15
BC6
SOFTWARE
LYS A:40 , 1VU A:401 , MET D:311 , ASP D:318 , HIS E:32 , PHE E:33 , LYS E:40 , ILE E:41 , ARG E:44 , ASN E:58 , ASP E:61 , ALA E:62 , ARG E:92 , LYS E:251 , LEU E:274 , OXL E:402 , HOH E:557 , HOH E:605 , HOH E:609 , HOH E:726 , HOH E:779
BINDING SITE FOR RESIDUE 1VU E 401
16
BC7
SOFTWARE
ALA D:320 , ARG E:92 , GLU E:157 , GLY E:181 , PRO E:182 , ALA E:183 , ASP E:184 , PRO E:246 , TRP E:272 , 1VU E:401 , MG E:403 , HOH E:609
BINDING SITE FOR RESIDUE OXL E 402
17
BC8
SOFTWARE
GLU E:157 , ASP E:184 , OXL E:402 , HOH E:508 , HOH E:609
BINDING SITE FOR RESIDUE MG E 403
18
BC9
SOFTWARE
MET E:316 , ASP E:318 , HIS F:32 , PHE F:33 , LYS F:40 , ILE F:41 , ARG F:44 , ALA F:62 , ARG F:92 , ALA F:183 , LEU F:274 , PRO F:276 , OXL F:402 , HOH F:571 , HOH F:723
BINDING SITE FOR RESIDUE 1VU F 401
19
CC1
SOFTWARE
ARG F:92 , GLU F:157 , GLY F:181 , PRO F:182 , ALA F:183 , ASP F:184 , PRO F:246 , TRP F:272 , 1VU F:401 , MG F:403 , HOH F:506 , HOH F:628
BINDING SITE FOR RESIDUE OXL F 402
20
CC2
SOFTWARE
GLU F:157 , ASP F:184 , OXL F:402 , HOH F:506 , HOH F:628
BINDING SITE FOR RESIDUE MG F 403
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
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CATH Domains
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all CATH domains
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Sorry, no Info available
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Pfam Domains
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Atom Selection
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Asymmetric Unit 1
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select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
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