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4L3Z
Biol. Unit 1
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Asym.Unit (225 KB)
Biol.Unit 1 (620 KB)
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(1)
Title
:
NITRITE COMPLEX OF TVNIR, SECOND MIDDLE DOSE DATA SET
Authors
:
A. A. Trofimov, K. M. Polyakov, V. A. Lazarenko, A. N. Popov, T. V. Tikhon A. V. Tikhonov, V. O. Popov
Date
:
07 Jun 13 (Deposition) - 11 Jun 14 (Release) - 11 Jun 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.85
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (3x)
Keywords
:
8 Hemes C, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. A. Trofimov, K. M. Polyakov, V. A. Lazarenko, A. N. Popov, T. V. Tikhonova, A. V. Tikhonov, V. O. Popov
Investigation Of The X-Ray-Induced Nitrite Reduction Catalysed By Cytochrome C Nitrite Reductase From The Bacterium Thioalkalivibrio Nitratireducens
To Be Published
[
close entry info
]
Hetero Components
(5, 93)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
1c: CALCIUM ION (CAc)
1d: CALCIUM ION (CAd)
2a: GLYCEROL (GOLa)
2b: GLYCEROL (GOLb)
2c: GLYCEROL (GOLc)
2d: GLYCEROL (GOLd)
2e: GLYCEROL (GOLe)
3a: HEME C (HECa)
3b: HEME C (HECb)
3c: HEME C (HECc)
3d: HEME C (HECd)
3e: HEME C (HECe)
3f: HEME C (HECf)
3g: HEME C (HECg)
3h: HEME C (HECh)
3i: HEME C (HECi)
3j: HEME C (HECj)
3k: HEME C (HECk)
3l: HEME C (HECl)
3m: HEME C (HECm)
3n: HEME C (HECn)
3o: HEME C (HECo)
3p: HEME C (HECp)
4a: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDa)
4b: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDb)
5a: NITRITE ION (NO2a)
5b: NITRITE ION (NO2b)
5c: NITRITE ION (NO2c)
5d: NITRITE ION (NO2d)
5e: NITRITE ION (NO2e)
5f: NITRITE ION (NO2f)
6a: SULFATE ION (SO4a)
6b: SULFATE ION (SO4b)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
-1
Ligand/Ion
CALCIUM ION
2
GOL
15
Ligand/Ion
GLYCEROL
3
HEC
48
Ligand/Ion
HEME C
4
MPD
6
Ligand/Ion
(4S)-2-METHYL-2,4-PENTANEDIOL
5
NO2
18
Ligand/Ion
NITRITE ION
6
SO4
6
Ligand/Ion
SULFATE ION
[
close Hetero Component info
]
Sites
(35, 35)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
34: DC7 (SOFTWARE)
35: DC8 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS A:113 , ALA A:114 , PRO A:116 , ASP A:125 , HIS A:126 , VAL A:129 , ARG A:131 , CYS A:184 , CYS A:187 , LYS A:188 , ARG A:242 , CYS A:299 , HIS A:300 , TYR A:303 , CYS A:305 , HIS A:361 , ASN A:486 , HEC A:603 , NO2 A:609 , HOH A:714 , HOH A:802 , HOH A:803 , HOH A:808 , HOH A:921 , HOH A:1190
BINDING SITE FOR RESIDUE HEC A 601
02
AC2
SOFTWARE
CYS A:66 , HIS A:70 , GLN A:73 , LEU A:225 , CYS A:227 , CYS A:230 , HIS A:231 , ALA A:290 , MET A:384 , TYR A:395 , THR A:396 , HIS A:398 , HEC A:607 , HOH A:781 , HOH A:865 , HOH A:881 , HOH A:1166
BINDING SITE FOR RESIDUE HEC A 602
03
AC3
SOFTWARE
SER A:84 , PRO A:116 , ARG A:117 , HIS A:119 , PHE A:121 , MET A:122 , ASP A:125 , CYS A:187 , CYS A:296 , CYS A:299 , HIS A:300 , HIS A:383 , MET A:384 , HEC A:601 , HEC A:604 , CA A:611 , HOH A:704 , HOH A:719 , HOH A:799
BINDING SITE FOR RESIDUE HEC A 603
04
AC4
SOFTWARE
HIS A:300 , PHE A:367 , HIS A:372 , VAL A:377 , ALA A:378 , CYS A:379 , CYS A:382 , HIS A:383 , THR A:402 , PRO A:403 , ARG A:404 , LYS A:431 , ASN A:486 , PHE A:490 , HIS A:491 , HEC A:603 , HEC A:605 , CA A:611 , GOL A:613 , HOH A:799 , HOH A:809 , HOH A:911 , HOH A:918 , HOH A:990 , HOH A:1034
BINDING SITE FOR RESIDUE HEC A 604
05
AC5
SOFTWARE
ASN A:141 , TRP A:142 , GLN A:143 , HIS A:372 , PRO A:403 , ALA A:410 , CYS A:411 , CYS A:414 , HIS A:415 , TRP A:418 , ILE A:427 , HEC A:604 , HOH A:943
BINDING SITE FOR RESIDUE HEC A 605
06
AC6
SOFTWARE
CYS A:14 , PHE A:15 , HIS A:18 , HIS A:25 , VAL A:33 , ASN A:34 , CYS A:35 , CYS A:38 , HIS A:39 , THR A:59 , LEU A:194 , PHE A:228 , PRO A:233 , HIS A:234 , ARG A:239 , PHE A:274 , ARG A:276 , ARG A:282 , HEC A:607 , HEC A:608 , HOH A:759 , HOH A:1193 , HOH A:1228
BINDING SITE FOR RESIDUE HEC A 606
07
AC7
SOFTWARE
LYS A:29 , HIS A:30 , HIS A:37 , ALA A:65 , CYS A:66 , THR A:68 , CYS A:69 , HIS A:70 , CYS A:227 , HIS A:231 , ALA A:236 , HEC A:602 , HEC A:606 , HOH A:1181 , HOH A:1235 , HOH A:1296 , THR B:68
BINDING SITE FOR RESIDUE HEC A 607
08
AC8
SOFTWARE
GLN A:13 , CYS A:14 , CYS A:17 , HIS A:18 , HIS A:39 , HIS A:44 , VAL A:45 , ALA A:48 , SER A:49 , SER A:50 , ARG A:52 , MET A:53 , ARG A:56 , PRO A:57 , THR A:59 , LEU A:194 , ARG A:276 , GLY A:277 , HEC A:606 , HOH A:761 , HOH A:778 , HOH A:1004 , HOH A:1224 , HOH A:1229
BINDING SITE FOR RESIDUE HEC A 608
09
AC9
SOFTWARE
ARG A:131 , TYR A:303 , HIS A:361 , HEC A:601 , HOH A:919 , HOH A:921 , HOH A:1190
BINDING SITE FOR RESIDUE NO2 A 609
10
BC1
SOFTWARE
GLU A:302 , TYR A:303 , LYS A:358 , GLN A:360 , HOH A:868 , HOH A:965
BINDING SITE FOR RESIDUE CA A 610
11
BC2
SOFTWARE
PRO A:116 , HEC A:603 , HEC A:604 , GOL A:613 , HOH A:911 , HOH A:928 , HOH A:1034
BINDING SITE FOR RESIDUE CA A 611
12
BC3
SOFTWARE
ARG A:87 , VAL A:128 , GLN A:138 , PHE A:139 , TRP A:142 , ARG A:497 , HOH A:1109
BINDING SITE FOR RESIDUE MPD A 612
13
BC4
SOFTWARE
ARG A:96 , GLU A:115 , PRO A:116 , ASN A:486 , HEC A:604 , CA A:611 , HOH A:805 , HOH A:809 , HOH A:1034 , HOH A:1038
BINDING SITE FOR RESIDUE GOL A 613
14
BC5
SOFTWARE
ASP A:101 , ALA A:110 , PHE A:111 , GLN A:175 , TRP A:444 , ILE A:504 , LYS A:508 , HOH A:938 , HOH A:1192
BINDING SITE FOR RESIDUE GOL A 614
15
BC6
SOFTWARE
TYR A:198 , ASN A:247 , ASP A:251 , LYS A:271 , ARG A:322 , HOH A:844
BINDING SITE FOR RESIDUE GOL A 615
16
BC7
SOFTWARE
THR A:351 , LYS A:447 , ASN A:515 , HOH A:744 , HOH A:1069 , HOH A:1183 , HOH A:1184
BINDING SITE FOR RESIDUE SO4 A 616
17
BC8
SOFTWARE
SER A:212 , GLU A:213 , VAL A:214 , NO2 A:618 , HOH A:821 , HOH A:962 , HOH A:1054 , HOH A:1117
BINDING SITE FOR RESIDUE NO2 A 617
18
BC9
SOFTWARE
SER A:212 , GLU A:213 , VAL A:214 , NO2 A:617 , HOH A:905 , HOH A:1054 , HOH A:1117
BINDING SITE FOR RESIDUE NO2 A 618
19
CC1
SOFTWARE
HIS B:113 , ALA B:114 , ASP B:125 , HIS B:126 , VAL B:129 , ARG B:131 , CYS B:184 , CYS B:187 , LYS B:188 , ARG B:242 , CYS B:299 , HIS B:300 , TYR B:303 , CYS B:305 , HIS B:361 , ASN B:486 , HEC B:603 , NO2 B:609 , HOH B:738 , HOH B:826 , HOH B:827 , HOH B:832 , HOH B:945 , HOH B:1217
BINDING SITE FOR RESIDUE HEC B 601
20
CC2
SOFTWARE
CYS B:66 , HIS B:70 , GLN B:73 , LEU B:225 , CYS B:227 , CYS B:230 , HIS B:231 , MET B:384 , TYR B:395 , THR B:396 , HIS B:398 , HEC B:607 , HOH B:804 , HOH B:889 , HOH B:905 , HOH B:1192 , HOH B:1266
BINDING SITE FOR RESIDUE HEC B 602
21
CC3
SOFTWARE
SER B:84 , PRO B:116 , ARG B:117 , HIS B:119 , PHE B:121 , MET B:122 , ASP B:125 , CYS B:187 , MET B:229 , CYS B:296 , CYS B:299 , HIS B:300 , HIS B:383 , MET B:384 , HEC B:601 , HEC B:604 , CA B:611 , HOH B:728 , HOH B:742 , HOH B:823 , HOH B:1060
BINDING SITE FOR RESIDUE HEC B 603
22
CC4
SOFTWARE
PHE B:367 , HIS B:372 , VAL B:377 , ALA B:378 , CYS B:379 , CYS B:382 , HIS B:383 , THR B:402 , PRO B:403 , ARG B:404 , LYS B:431 , ASN B:486 , PHE B:490 , HIS B:491 , HEC B:603 , HEC B:605 , CA B:611 , GOL B:613 , HOH B:823 , HOH B:833 , HOH B:935 , HOH B:942 , HOH B:1015 , HOH B:1060
BINDING SITE FOR RESIDUE HEC B 604
23
CC5
SOFTWARE
ASN B:141 , TRP B:142 , GLN B:143 , VAL B:371 , HIS B:372 , PRO B:403 , ALA B:410 , CYS B:411 , CYS B:414 , HIS B:415 , TRP B:418 , ILE B:427 , HEC B:604
BINDING SITE FOR RESIDUE HEC B 605
24
CC6
SOFTWARE
CYS B:14 , PHE B:15 , HIS B:18 , VAL B:33 , ASN B:34 , CYS B:35 , CYS B:38 , HIS B:39 , THR B:59 , LEU B:194 , PHE B:228 , PRO B:233 , HIS B:234 , ARG B:239 , PHE B:274 , ARG B:276 , ARG B:282 , HEC B:607 , HEC B:608 , HOH B:782 , HOH B:1214
BINDING SITE FOR RESIDUE HEC B 606
25
CC7
SOFTWARE
THR A:68 , LYS B:29 , HIS B:30 , HIS B:37 , ALA B:65 , CYS B:66 , THR B:68 , CYS B:69 , HIS B:70 , CYS B:227 , HIS B:231 , ALA B:236 , HEC B:602 , HEC B:606 , HOH B:707 , HOH B:1207 , HOH B:1238 , HOH B:1259 , HOH B:1274
BINDING SITE FOR RESIDUE HEC B 607
26
CC8
SOFTWARE
GLN B:13 , CYS B:14 , CYS B:17 , HIS B:18 , HIS B:39 , HIS B:44 , VAL B:45 , ALA B:48 , SER B:49 , ARG B:51 , ARG B:52 , MET B:53 , ARG B:56 , PRO B:57 , THR B:59 , LEU B:194 , GLN B:275 , ARG B:276 , HEC B:606 , HOH B:784 , HOH B:801 , HOH B:1029 , HOH B:1214 , HOH B:1257 , HOH B:1285
BINDING SITE FOR RESIDUE HEC B 608
27
CC9
SOFTWARE
ARG B:131 , TYR B:303 , HIS B:361 , HEC B:601 , HOH B:832 , HOH B:943 , HOH B:1217
BINDING SITE FOR RESIDUE NO2 B 609
28
DC1
SOFTWARE
GLU B:302 , TYR B:303 , LYS B:358 , GLN B:360 , HOH B:892 , HOH B:989
BINDING SITE FOR RESIDUE CA B 610
29
DC2
SOFTWARE
PRO B:116 , HEC B:603 , HEC B:604 , GOL B:613 , HOH B:935 , HOH B:952 , HOH B:1060
BINDING SITE FOR RESIDUE CA B 611
30
DC3
SOFTWARE
ARG B:87 , VAL B:128 , GLN B:138 , PHE B:139 , TRP B:142 , ARG B:497 , HOH B:1135
BINDING SITE FOR RESIDUE MPD B 612
31
DC4
SOFTWARE
ARG B:96 , GLU B:115 , PRO B:116 , ASN B:486 , HEC B:604 , CA B:611 , HOH B:829 , HOH B:833 , HOH B:1060 , HOH B:1064
BINDING SITE FOR RESIDUE GOL B 613
32
DC5
SOFTWARE
ASP B:101 , ALA B:110 , GLN B:175 , TRP B:444 , ILE B:504 , LYS B:508 , HOH B:962 , HOH B:1221
BINDING SITE FOR RESIDUE GOL B 614
33
DC6
SOFTWARE
THR B:351 , LYS B:447 , ASN B:515 , HOH B:767 , HOH B:1095 , HOH B:1210 , HOH B:1291
BINDING SITE FOR RESIDUE SO4 B 615
34
DC7
SOFTWARE
GLN B:169 , GLU B:213 , VAL B:214 , NO2 B:617 , HOH B:1143 , HOH B:1227
BINDING SITE FOR RESIDUE NO2 B 616
35
DC8
SOFTWARE
SER B:212 , GLU B:213 , VAL B:214 , NO2 B:616 , HOH B:845 , HOH B:986 , HOH B:1080 , HOH B:1143
BINDING SITE FOR RESIDUE NO2 B 617
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