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4L29
Biol. Unit 10
Info
Asym.Unit (1.8 MB)
Biol.Unit 1 (139 KB)
Biol.Unit 10 (140 KB)
Biol.Unit 11 (140 KB)
Biol.Unit 12 (140 KB)
Biol.Unit 13 (141 KB)
Biol.Unit 14 (140 KB)
Biol.Unit 2 (139 KB)
Biol.Unit 3 (140 KB)
Biol.Unit 4 (140 KB)
Biol.Unit 5 (140 KB)
Biol.Unit 6 (140 KB)
Biol.Unit 7 (139 KB)
Biol.Unit 8 (140 KB)
Biol.Unit 9 (140 KB)
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(1)
Title
:
STRUCTURE OF WTMHC CLASS I WITH NY-ESO1 DOUBLE MUTANT
Authors
:
L. Halabelian, S. Giorgetti, V. Bellotti, M. Bolognesi, S. Ricagno
Date
:
04 Jun 13 (Deposition) - 25 Dec 13 (Release) - 26 Feb 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.09
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,a,b,c,e,f,g,h,i,j,k,l,m,n,o,p,q
Biol. Unit 1: A,B,m (1x)
Biol. Unit 2: C,D,i (1x)
Biol. Unit 3: E,F,k (1x)
Biol. Unit 4: G,H,f (1x)
Biol. Unit 5: I,J,l (1x)
Biol. Unit 6: K,L,h (1x)
Biol. Unit 7: M,N,e (1x)
Biol. Unit 8: O,P,n (1x)
Biol. Unit 9: Q,R,p (1x)
Biol. Unit 10: S,T,o (1x)
Biol. Unit 11: U,V,c (1x)
Biol. Unit 12: W,X,g (1x)
Biol. Unit 13: Y,Z,q (1x)
Biol. Unit 14: a,b,j (1x)
Keywords
:
Mhc, Beta-2 Microglobulin, Hla_a0201, Ny-Eso1, D76N Variant, Immunglobulin, Beta Sandwitch, Immune System
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
L. Halabelian, S. Ricagno, S. Giorgetti, C. Santambrogio, A. Barbiroli, S. Pellegrino, A. Achour, R. Grandori, L. Marchese, S. Raimondi, P. P. Mangione, G. Esposito, R. Al-Shawi, J. P. Simons, I. Speck, M. Stoppini, M. Bolognesi, V. Bellotti
Class I Major Histocompatibility Complex, The Trojan Horse For Secretion Of Amyloidogenic Beta 2-Microglobulin.
J. Biol. Chem. V. 289 3318 2014
[
close entry info
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Hetero Components
(1, 2)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
1aa: CHLORIDE ION (CLaa)
1ab: CHLORIDE ION (CLab)
1ac: CHLORIDE ION (CLac)
1ad: CHLORIDE ION (CLad)
1b: CHLORIDE ION (CLb)
1c: CHLORIDE ION (CLc)
1d: CHLORIDE ION (CLd)
1e: CHLORIDE ION (CLe)
1f: CHLORIDE ION (CLf)
1g: CHLORIDE ION (CLg)
1h: CHLORIDE ION (CLh)
1i: CHLORIDE ION (CLi)
1j: CHLORIDE ION (CLj)
1k: CHLORIDE ION (CLk)
1l: CHLORIDE ION (CLl)
1m: CHLORIDE ION (CLm)
1n: CHLORIDE ION (CLn)
1o: CHLORIDE ION (CLo)
1p: CHLORIDE ION (CLp)
1q: CHLORIDE ION (CLq)
1r: CHLORIDE ION (CLr)
1s: CHLORIDE ION (CLs)
1t: CHLORIDE ION (CLt)
1u: CHLORIDE ION (CLu)
1v: CHLORIDE ION (CLv)
1w: CHLORIDE ION (CLw)
1x: CHLORIDE ION (CLx)
1y: CHLORIDE ION (CLy)
1z: CHLORIDE ION (CLz)
2a: GLYCEROL (GOLa)
2b: GLYCEROL (GOLb)
2c: GLYCEROL (GOLc)
2d: GLYCEROL (GOLd)
2e: GLYCEROL (GOLe)
2f: GLYCEROL (GOLf)
2g: GLYCEROL (GOLg)
2h: GLYCEROL (GOLh)
2i: GLYCEROL (GOLi)
2j: GLYCEROL (GOLj)
2k: GLYCEROL (GOLk)
2l: GLYCEROL (GOLl)
2m: GLYCEROL (GOLm)
2n: GLYCEROL (GOLn)
2o: GLYCEROL (GOLo)
2p: GLYCEROL (GOLp)
2q: GLYCEROL (GOLq)
2r: GLYCEROL (GOLr)
2s: GLYCEROL (GOLs)
2t: GLYCEROL (GOLt)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CL
-1
Ligand/Ion
CHLORIDE ION
2
GOL
2
Ligand/Ion
GLYCEROL
[
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]
Sites
(4, 4)
Info
All Sites
1: DC5 (SOFTWARE)
2: DC6 (SOFTWARE)
3: DC7 (SOFTWARE)
4: DC8 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
DC5
SOFTWARE
ARG S:21
BINDING SITE FOR RESIDUE CL S 301
2
DC6
SOFTWARE
ASP S:37
BINDING SITE FOR RESIDUE GOL S 302
3
DC7
SOFTWARE
LYS T:41 , THR T:71 , TYR T:78
BINDING SITE FOR RESIDUE CL T 101
4
DC8
SOFTWARE
ARG S:97 , HIS S:114 , GLN S:155 , LEU S:156 , LEU o:3 , THR o:7
BINDING SITE FOR RESIDUE GOL o 101
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(, 0)
Info
All PROSITE Patterns/Profiles
;
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End label:
Sorry, no Info available
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(3, 39)
Info
All SCOP Domains
1a: SCOP_d4l29b_ (B:)
1b: SCOP_d4l29d_ (D:)
1c: SCOP_d4l29f_ (F:)
1d: SCOP_d4l29h_ (H:)
1e: SCOP_d4l29j_ (J:)
1f: SCOP_d4l29l_ (L:)
1g: SCOP_d4l29n_ (N:)
1h: SCOP_d4l29p_ (P:)
1i: SCOP_d4l29r_ (R:)
1j: SCOP_d4l29t_ (T:)
1k: SCOP_d4l29v_ (V:)
1l: SCOP_d4l29x_ (X:)
1m: SCOP_d4l29z_ (Z:)
2a: SCOP_d4l29a2 (A:182-276)
2b: SCOP_d4l29c2 (C:182-276)
2c: SCOP_d4l29e2 (E:182-276)
2d: SCOP_d4l29g2 (G:182-276)
2e: SCOP_d4l29i2 (I:182-276)
2f: SCOP_d4l29k2 (K:182-276)
2g: SCOP_d4l29m2 (M:182-276)
2h: SCOP_d4l29o2 (O:182-276)
2i: SCOP_d4l29q2 (Q:182-276)
2j: SCOP_d4l29s2 (S:182-276)
2k: SCOP_d4l29u2 (U:182-276)
2l: SCOP_d4l29w2 (W:182-276)
2m: SCOP_d4l29y2 (Y:182-276)
3a: SCOP_d4l29a1 (A:1-181)
3b: SCOP_d4l29c1 (C:1-181)
3c: SCOP_d4l29u1 (U:1-181)
3d: SCOP_d4l29w1 (W:1-181)
3e: SCOP_d4l29y1 (Y:1-181)
3f: SCOP_d4l29e1 (E:1-181)
3g: SCOP_d4l29g1 (G:1-181)
3h: SCOP_d4l29i1 (I:1-181)
3i: SCOP_d4l29k1 (K:1-181)
3j: SCOP_d4l29m1 (M:1-181)
3k: SCOP_d4l29o1 (O:1-181)
3l: SCOP_d4l29q1 (Q:1-181)
3m: SCOP_d4l29s1 (S:1-181)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
Immunoglobulin
(5995)
Family
:
C1 set domains (antibody constant domain-like)
(3013)
Protein domain
:
beta2-microglobulin
(530)
Human (Homo sapiens) [TaxId: 9606]
(350)
1a
d4l29b_
B:
1b
d4l29d_
D:
1c
d4l29f_
F:
1d
d4l29h_
H:
1e
d4l29j_
J:
1f
d4l29l_
L:
1g
d4l29n_
N:
1h
d4l29p_
P:
1i
d4l29r_
R:
1j
d4l29t_
T:
1k
d4l29v_
V:
1l
d4l29x_
X:
1m
d4l29z_
Z:
Protein domain
:
Class I MHC, alpha-3 domain
(293)
Human (Homo sapiens) [TaxId: 9606]
(187)
2a
d4l29a2
A:182-276
2b
d4l29c2
C:182-276
2c
d4l29e2
E:182-276
2d
d4l29g2
G:182-276
2e
d4l29i2
I:182-276
2f
d4l29k2
K:182-276
2g
d4l29m2
M:182-276
2h
d4l29o2
O:182-276
2i
d4l29q2
Q:182-276
2j
d4l29s2
S:182-276
2k
d4l29u2
U:182-276
2l
d4l29w2
W:182-276
2m
d4l29y2
Y:182-276
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
MHC antigen-recognition domain
(585)
Superfamily
:
MHC antigen-recognition domain
(585)
Family
:
MHC antigen-recognition domain
(533)
Protein domain
:
Class I MHC, alpha-1 and alpha-2 domains
(294)
Human (Homo sapiens), HLA-A2 [TaxId: 9606]
(2)
3a
d4l29a1
A:1-181
3b
d4l29c1
C:1-181
3c
d4l29u1
U:1-181
3d
d4l29w1
W:1-181
3e
d4l29y1
Y:1-181
3f
d4l29e1
E:1-181
3g
d4l29g1
G:1-181
3h
d4l29i1
I:1-181
3i
d4l29k1
K:1-181
3j
d4l29m1
M:1-181
3k
d4l29o1
O:1-181
3l
d4l29q1
Q:1-181
3m
d4l29s1
S:1-181
[
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]
CATH Domains
(0, 0)
Info
all CATH domains
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Label:
Sorry, no Info available
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Pfam Domains
(0, 0)
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all PFAM domains
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Sorry, no Info available
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Asymmetric Unit 1
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Asym.Unit (1.8 MB)
Header - Asym.Unit
Biol.Unit 1 (139 KB)
Header - Biol.Unit 1
Biol.Unit 10 (140 KB)
Header - Biol.Unit 10
Biol.Unit 11 (140 KB)
Header - Biol.Unit 11
Biol.Unit 12 (140 KB)
Header - Biol.Unit 12
Biol.Unit 13 (141 KB)
Header - Biol.Unit 13
Biol.Unit 14 (140 KB)
Header - Biol.Unit 14
Biol.Unit 2 (139 KB)
Header - Biol.Unit 2
Biol.Unit 3 (140 KB)
Header - Biol.Unit 3
Biol.Unit 4 (140 KB)
Header - Biol.Unit 4
Biol.Unit 5 (140 KB)
Header - Biol.Unit 5
Biol.Unit 6 (140 KB)
Header - Biol.Unit 6
Biol.Unit 7 (139 KB)
Header - Biol.Unit 7
Biol.Unit 8 (140 KB)
Header - Biol.Unit 8
Biol.Unit 9 (140 KB)
Header - Biol.Unit 9
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