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4L1U
Biol. Unit 1
Info
Asym.Unit (440 KB)
Biol.Unit 1 (76 KB)
Biol.Unit 2 (75 KB)
Biol.Unit 3 (75 KB)
Biol.Unit 4 (75 KB)
Biol.Unit 5 (70 KB)
Biol.Unit 6 (73 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HUMAN RTF1 PLUS3 DOMAIN IN COMPLEX WITH SPT5 CTR PHOSPHOPEPTIDE
Authors
:
A. D. Wier, A. Heroux, A. P. Vandemark
Date
:
03 Jun 13 (Deposition) - 02 Oct 13 (Release) - 20 Nov 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.42
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J
Biol. Unit 1: B,G (1x)
Biol. Unit 2: C,H (1x)
Biol. Unit 3: E,I (1x)
Biol. Unit 4: F,J (1x)
Biol. Unit 5: A (1x)
Biol. Unit 6: D (1x)
Keywords
:
Tutor, Plus3, Peptide Binding Protein, Spt5 Ctr Binding, Transcription, Paf1 Complex, Rtf1, Orf Association Region, Chromatin, Transcription-Peptide Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. D. Wier, M. K. Mayekar, A. Heroux, K. M. Arndt, A. P. Vandemark
Structural Basis For Spt5-Mediated Recruitment Of The Paf1 Complex To Chromatin.
Proc. Natl. Acad. Sci. Usa V. 110 17290 2013
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Hetero Components
(2, 8)
Info
All Hetero Components
1a: GLYCEROL (GOLa)
1b: GLYCEROL (GOLb)
1c: GLYCEROL (GOLc)
1d: GLYCEROL (GOLd)
2a: SULFATE ION (SO4a)
2aa: SULFATE ION (SO4aa)
2ab: SULFATE ION (SO4ab)
2ac: SULFATE ION (SO4ac)
2b: SULFATE ION (SO4b)
2c: SULFATE ION (SO4c)
2d: SULFATE ION (SO4d)
2e: SULFATE ION (SO4e)
2f: SULFATE ION (SO4f)
2g: SULFATE ION (SO4g)
2h: SULFATE ION (SO4h)
2i: SULFATE ION (SO4i)
2j: SULFATE ION (SO4j)
2k: SULFATE ION (SO4k)
2l: SULFATE ION (SO4l)
2m: SULFATE ION (SO4m)
2n: SULFATE ION (SO4n)
2o: SULFATE ION (SO4o)
2p: SULFATE ION (SO4p)
2q: SULFATE ION (SO4q)
2r: SULFATE ION (SO4r)
2s: SULFATE ION (SO4s)
2t: SULFATE ION (SO4t)
2u: SULFATE ION (SO4u)
2v: SULFATE ION (SO4v)
2w: SULFATE ION (SO4w)
2x: SULFATE ION (SO4x)
2y: SULFATE ION (SO4y)
2z: SULFATE ION (SO4z)
3a: PHOSPHOTHREONINE (TPOa)
3b: PHOSPHOTHREONINE (TPOb)
3c: PHOSPHOTHREONINE (TPOc)
3d: PHOSPHOTHREONINE (TPOd)
View:
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Label:
No.
Name
Count
Type
Full Name
1
GOL
-1
Ligand/Ion
GLYCEROL
2
SO4
7
Ligand/Ion
SULFATE ION
3
TPO
1
Mod. Amino Acid
PHOSPHOTHREONINE
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Sites
(11, 11)
Info
All Sites
01: AC5 (SOFTWARE)
02: AC6 (SOFTWARE)
03: AC7 (SOFTWARE)
04: AC8 (SOFTWARE)
05: AC9 (SOFTWARE)
06: BC1 (SOFTWARE)
07: BC2 (SOFTWARE)
08: BC8 (SOFTWARE)
09: BC9 (SOFTWARE)
10: CC6 (SOFTWARE)
11: CC9 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
01
AC5
SOFTWARE
ARG B:366 , GLU B:370 , GLY B:418 , HOH B:602 , ARG D:366 , GLU D:370 , GLY D:418 , HOH D:603
BINDING SITE FOR RESIDUE SO4 B 501
02
AC6
SOFTWARE
THR B:411 , ALA B:412 , ARG B:438
BINDING SITE FOR RESIDUE SO4 B 502
03
AC7
SOFTWARE
HIS B:374 , THR B:422 , ASN B:423 , LYS B:424
BINDING SITE FOR RESIDUE SO4 B 503
04
AC8
SOFTWARE
HIS B:394 , ASN B:395
BINDING SITE FOR RESIDUE SO4 B 504
05
AC9
SOFTWARE
ARG B:401 , LEU B:428 , ARG B:429 , HIS B:430 , ASP B:433 , ARG B:435 , PHE B:437
BINDING SITE FOR RESIDUE SO4 B 505
06
BC1
SOFTWARE
THR B:448 , GLU B:449 , HOH B:608
BINDING SITE FOR RESIDUE SO4 B 506
07
BC2
SOFTWARE
GLN B:416
BINDING SITE FOR RESIDUE SO4 B 507
08
BC8
SOFTWARE
GLN B:416 , ARG D:363 , SER D:365
BINDING SITE FOR RESIDUE SO4 D 501
09
BC9
SOFTWARE
ARG D:366 , TYR D:400 , SER D:443 , ASN D:444 , GLN D:445 , ARG G:783
BINDING SITE FOR RESIDUE SO4 D 502
10
CC6
SOFTWARE
ARG B:363 , SER B:365 , LYS B:368 , ARG B:371 , HOH B:615 , GLN D:416
BINDING SITE FOR RESIDUE GOL D 508
11
CC9
SOFTWARE
ASN B:393 , HIS E:394 , ASN E:395
BINDING SITE FOR RESIDUE SO4 E 503
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SAPs(SNPs)/Variants
(0, 0)
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PROSITE Patterns/Profiles
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Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
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CATH Domains
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Pfam Domains
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Asymmetric Unit 1
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Show PDB file:
Asym.Unit (440 KB)
Header - Asym.Unit
Biol.Unit 1 (76 KB)
Header - Biol.Unit 1
Biol.Unit 2 (75 KB)
Header - Biol.Unit 2
Biol.Unit 3 (75 KB)
Header - Biol.Unit 3
Biol.Unit 4 (75 KB)
Header - Biol.Unit 4
Biol.Unit 5 (70 KB)
Header - Biol.Unit 5
Biol.Unit 6 (73 KB)
Header - Biol.Unit 6
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