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4L1U
Asym. Unit
Info
Asym.Unit (440 KB)
Biol.Unit 1 (76 KB)
Biol.Unit 2 (75 KB)
Biol.Unit 3 (75 KB)
Biol.Unit 4 (75 KB)
Biol.Unit 5 (70 KB)
Biol.Unit 6 (73 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HUMAN RTF1 PLUS3 DOMAIN IN COMPLEX WITH SPT5 CTR PHOSPHOPEPTIDE
Authors
:
A. D. Wier, A. Heroux, A. P. Vandemark
Date
:
03 Jun 13 (Deposition) - 02 Oct 13 (Release) - 20 Nov 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.42
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J
Biol. Unit 1: B,G (1x)
Biol. Unit 2: C,H (1x)
Biol. Unit 3: E,I (1x)
Biol. Unit 4: F,J (1x)
Biol. Unit 5: A (1x)
Biol. Unit 6: D (1x)
Keywords
:
Tutor, Plus3, Peptide Binding Protein, Spt5 Ctr Binding, Transcription, Paf1 Complex, Rtf1, Orf Association Region, Chromatin, Transcription-Peptide Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. D. Wier, M. K. Mayekar, A. Heroux, K. M. Arndt, A. P. Vandemark
Structural Basis For Spt5-Mediated Recruitment Of The Paf1 Complex To Chromatin.
Proc. Natl. Acad. Sci. Usa V. 110 17290 2013
[
close entry info
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Hetero Components
(3, 37)
Info
All Hetero Components
1a: GLYCEROL (GOLa)
1b: GLYCEROL (GOLb)
1c: GLYCEROL (GOLc)
1d: GLYCEROL (GOLd)
2a: SULFATE ION (SO4a)
2aa: SULFATE ION (SO4aa)
2ab: SULFATE ION (SO4ab)
2ac: SULFATE ION (SO4ac)
2b: SULFATE ION (SO4b)
2c: SULFATE ION (SO4c)
2d: SULFATE ION (SO4d)
2e: SULFATE ION (SO4e)
2f: SULFATE ION (SO4f)
2g: SULFATE ION (SO4g)
2h: SULFATE ION (SO4h)
2i: SULFATE ION (SO4i)
2j: SULFATE ION (SO4j)
2k: SULFATE ION (SO4k)
2l: SULFATE ION (SO4l)
2m: SULFATE ION (SO4m)
2n: SULFATE ION (SO4n)
2o: SULFATE ION (SO4o)
2p: SULFATE ION (SO4p)
2q: SULFATE ION (SO4q)
2r: SULFATE ION (SO4r)
2s: SULFATE ION (SO4s)
2t: SULFATE ION (SO4t)
2u: SULFATE ION (SO4u)
2v: SULFATE ION (SO4v)
2w: SULFATE ION (SO4w)
2x: SULFATE ION (SO4x)
2y: SULFATE ION (SO4y)
2z: SULFATE ION (SO4z)
3a: PHOSPHOTHREONINE (TPOa)
3b: PHOSPHOTHREONINE (TPOb)
3c: PHOSPHOTHREONINE (TPOc)
3d: PHOSPHOTHREONINE (TPOd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GOL
4
Ligand/Ion
GLYCEROL
2
SO4
29
Ligand/Ion
SULFATE ION
3
TPO
4
Mod. Amino Acid
PHOSPHOTHREONINE
[
close Hetero Component info
]
Sites
(33, 33)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ARG A:401 , ASP A:433 , ARG A:435 , PHE A:437
BINDING SITE FOR RESIDUE SO4 A 501
02
AC2
SOFTWARE
ARG A:366 , SER A:443 , ASN A:444 , GLN A:445 , ARG H:783
BINDING SITE FOR RESIDUE SO4 A 502
03
AC3
SOFTWARE
VAL A:414 , TYR A:415 , GLN A:416
BINDING SITE FOR RESIDUE SO4 A 503
04
AC4
SOFTWARE
ARG A:363 , SER A:365 , HIS A:367 , LYS A:368 , GLN C:416
BINDING SITE FOR RESIDUE GOL A 504
05
AC5
SOFTWARE
ARG B:366 , GLU B:370 , GLY B:418 , HOH B:602 , ARG D:366 , GLU D:370 , GLY D:418 , HOH D:603
BINDING SITE FOR RESIDUE SO4 B 501
06
AC6
SOFTWARE
THR B:411 , ALA B:412 , ARG B:438
BINDING SITE FOR RESIDUE SO4 B 502
07
AC7
SOFTWARE
HIS B:374 , THR B:422 , ASN B:423 , LYS B:424
BINDING SITE FOR RESIDUE SO4 B 503
08
AC8
SOFTWARE
HIS B:394 , ASN B:395
BINDING SITE FOR RESIDUE SO4 B 504
09
AC9
SOFTWARE
ARG B:401 , LEU B:428 , ARG B:429 , HIS B:430 , ASP B:433 , ARG B:435 , PHE B:437
BINDING SITE FOR RESIDUE SO4 B 505
10
BC1
SOFTWARE
THR B:448 , GLU B:449 , HOH B:608
BINDING SITE FOR RESIDUE SO4 B 506
11
BC2
SOFTWARE
GLN B:416
BINDING SITE FOR RESIDUE SO4 B 507
12
BC3
SOFTWARE
ARG C:363 , SER C:365 , LYS C:368
BINDING SITE FOR RESIDUE SO4 C 501
13
BC4
SOFTWARE
HIS C:374 , THR C:422 , ASN C:423 , LYS C:424
BINDING SITE FOR RESIDUE SO4 C 502
14
BC5
SOFTWARE
THR C:448 , GLU C:449
BINDING SITE FOR RESIDUE SO4 C 503
15
BC6
SOFTWARE
ARG A:366 , GLU A:370 , ARG C:366 , GLU C:370 , GLY C:418 , HOH C:612
BINDING SITE FOR RESIDUE SO4 C 504
16
BC7
SOFTWARE
PHE C:377 , PHE C:378 , ALA C:379 , LYS C:380 , HIS F:394
BINDING SITE FOR RESIDUE GOL C 505
17
BC8
SOFTWARE
GLN B:416 , ARG D:363 , SER D:365
BINDING SITE FOR RESIDUE SO4 D 501
18
BC9
SOFTWARE
ARG D:366 , TYR D:400 , SER D:443 , ASN D:444 , GLN D:445 , ARG G:783
BINDING SITE FOR RESIDUE SO4 D 502
19
CC1
SOFTWARE
ARG D:401 , LYS D:454 , HOH D:618
BINDING SITE FOR RESIDUE SO4 D 503
20
CC2
SOFTWARE
ARG D:361 , ASN D:473 , ASN F:432
BINDING SITE FOR RESIDUE SO4 D 504
21
CC3
SOFTWARE
ARG D:401 , HIS D:430 , ASP D:433 , ARG D:435 , PHE D:437
BINDING SITE FOR RESIDUE SO4 D 505
22
CC4
SOFTWARE
THR D:448 , GLU D:449
BINDING SITE FOR RESIDUE SO4 D 506
23
CC5
SOFTWARE
TYR D:415 , GLN D:416 , ARG D:421
BINDING SITE FOR RESIDUE SO4 D 507
24
CC6
SOFTWARE
ARG B:363 , SER B:365 , LYS B:368 , ARG B:371 , HOH B:615 , GLN D:416
BINDING SITE FOR RESIDUE GOL D 508
25
CC7
SOFTWARE
ARG E:401 , LYS E:454
BINDING SITE FOR RESIDUE SO4 E 501
26
CC8
SOFTWARE
ARG E:366 , GLU E:370 , GLY E:418 , HOH E:611 , ARG I:783
BINDING SITE FOR RESIDUE SO4 E 502
27
CC9
SOFTWARE
ASN B:393 , HIS E:394 , ASN E:395
BINDING SITE FOR RESIDUE SO4 E 503
28
DC1
SOFTWARE
ARG E:401 , ARG E:429 , HIS E:430 , ASP E:433 , ARG E:435 , PHE E:437
BINDING SITE FOR RESIDUE SO4 E 504
29
DC2
SOFTWARE
THR E:448 , GLU E:449 , HOH E:609
BINDING SITE FOR RESIDUE SO4 E 505
30
DC3
SOFTWARE
ARG F:366 , GLU F:370 , GLY F:418 , SER J:782
BINDING SITE FOR RESIDUE SO4 F 501
31
DC4
SOFTWARE
THR F:448 , GLU F:449
BINDING SITE FOR RESIDUE SO4 F 502
32
DC5
SOFTWARE
THR F:411 , ALA F:412 , LYS F:413 , ARG F:438
BINDING SITE FOR RESIDUE SO4 F 503
33
DC6
SOFTWARE
SER F:365 , LYS F:368 , ARG F:371
BINDING SITE FOR RESIDUE GOL F 504
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(0, 0)
Info
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;
View:
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End label:
Sorry, no Info available
[
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Exons
(0, 0)
Info
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
Info
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Sorry, no Info available
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CATH Domains
(0, 0)
Info
all CATH domains
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Label:
Sorry, no Info available
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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Asymmetric Unit 1
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select residue range 5 to 10 in all chains
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Asym.Unit (440 KB)
Header - Asym.Unit
Biol.Unit 1 (76 KB)
Header - Biol.Unit 1
Biol.Unit 2 (75 KB)
Header - Biol.Unit 2
Biol.Unit 3 (75 KB)
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Biol.Unit 4 (75 KB)
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Biol.Unit 5 (70 KB)
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