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4L19
Biol. Unit 2
Info
Asym.Unit (129 KB)
Biol.Unit 1 (62 KB)
Biol.Unit 2 (64 KB)
Biol.Unit 3 (243 KB)
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(1)
Title
:
MATRIX METALLOPROTEINASE-13 COMPLEXED WITH SELECTIVE INHIBITOR COMPOUND Q1
Authors
:
D. Minond, T. P. Spicer, J. Jiang, A. B. Taylor, P. J. Hart, W. R. Roush, G. P. S. Hodder
Date
:
02 Jun 13 (Deposition) - 10 Dec 14 (Release) - 10 Dec 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.66
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: A,B (2x)
Keywords
:
Metalloprotease, Hydrolase, Mmp-13, Collagenase, Exosite Inhibitor, Hydrolase-Hydrolase Inhibitor Complex
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
T. P. Spicer, J. Jiang, A. B. Taylor, J. Y. Choi, P. J. Hart, W. R. Roush, G. B. Fields, P. S. Hodder, D. Minond
Characterization Of Selective Exosite-Binding Inhibitors Of Matrix Metalloproteinase 13 That Prevent Articular Cartilag Degradation In Vitro.
J. Med. Chem. V. 57 9598 2014
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Hetero Components
(3, 7)
Info
All Hetero Components
1a: 2-[(4-METHYLBENZYL)SULFANYL]-3,5,6... (1UAa)
1b: 2-[(4-METHYLBENZYL)SULFANYL]-3,5,6... (1UAb)
1c: 2-[(4-METHYLBENZYL)SULFANYL]-3,5,6... (1UAc)
2a: CALCIUM ION (CAa)
2b: CALCIUM ION (CAb)
2c: CALCIUM ION (CAc)
2d: CALCIUM ION (CAd)
3a: FORMIC ACID (FMTa)
3b: FORMIC ACID (FMTb)
3c: FORMIC ACID (FMTc)
3d: FORMIC ACID (FMTd)
3e: FORMIC ACID (FMTe)
4a: GLYCEROL (GOLa)
4b: GLYCEROL (GOLb)
4c: GLYCEROL (GOLc)
5a: ZINC ION (ZNa)
5b: ZINC ION (ZNb)
5c: ZINC ION (ZNc)
5d: ZINC ION (ZNd)
5e: ZINC ION (ZNe)
View:
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Label:
No.
Name
Count
Type
Full Name
1
1UA
1
Ligand/Ion
2-[(4-METHYLBENZYL)SULFANYL]-3,5,6,7-TETRAHYDRO-4H-CYCLOPENTA[D]PYRIMIDIN-4-ONE
2
CA
-1
Ligand/Ion
CALCIUM ION
3
FMT
4
Ligand/Ion
FORMIC ACID
4
GOL
2
Ligand/Ion
GLYCEROL
5
ZN
-1
Ligand/Ion
ZINC ION
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Sites
(12, 12)
Info
All Sites
01: AC9 (SOFTWARE)
02: BC1 (SOFTWARE)
03: BC2 (SOFTWARE)
04: BC3 (SOFTWARE)
05: BC4 (SOFTWARE)
06: BC5 (SOFTWARE)
07: BC6 (SOFTWARE)
08: BC7 (SOFTWARE)
09: BC8 (SOFTWARE)
10: BC9 (SOFTWARE)
11: CC1 (SOFTWARE)
12: CC2 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
01
AC9
SOFTWARE
HIS A:131 , GLU A:135 , ARG A:155 , SER A:250 , ZN A:303 , PRO B:127
BINDING SITE FOR RESIDUE GOL A 309
02
BC1
SOFTWARE
HIS B:172 , ASP B:174 , HIS B:187 , HIS B:200
BINDING SITE FOR RESIDUE ZN B 301
03
BC2
SOFTWARE
HIS B:222 , HIS B:226 , HIS B:232 , FMT B:305
BINDING SITE FOR RESIDUE ZN B 302
04
BC3
SOFTWARE
ASP B:162 , ASN B:194 , GLY B:196 , ASP B:198 , HOH B:489 , HOH B:505
BINDING SITE FOR RESIDUE CA B 303
05
BC4
SOFTWARE
ASP B:179 , GLY B:180 , SER B:182 , LEU B:184 , ASP B:202 , GLU B:205
BINDING SITE FOR RESIDUE CA B 304
06
BC5
SOFTWARE
HIS B:222 , GLU B:223 , HIS B:226 , HIS B:232 , ZN B:302 , HOH B:458
BINDING SITE FOR RESIDUE FMT B 305
07
BC6
SOFTWARE
THR A:130 , HIS A:131 , THR B:130 , HIS B:131 , HOH B:408
BINDING SITE FOR RESIDUE FMT B 306
08
BC7
SOFTWARE
LYS B:234 , GLN B:263 , HOH B:442 , HOH B:464
BINDING SITE FOR RESIDUE FMT B 307
09
BC8
SOFTWARE
LYS B:115 , MET B:116 , ASN B:117 , HOH B:460
BINDING SITE FOR RESIDUE FMT B 308
10
BC9
SOFTWARE
HIS B:222 , GLY B:237 , LEU B:239 , PHE B:241 , ILE B:243 , TYR B:244 , THR B:245 , PHE B:252
BINDING SITE FOR RESIDUE 1UA B 309
11
CC1
SOFTWARE
TYR B:176 , ALA B:188 , HOH B:493 , HOH B:555
BINDING SITE FOR RESIDUE GOL B 310
12
CC2
SOFTWARE
ARG B:155 , LEU B:156 , HIS B:157 , ASP B:158 , HOH B:413 , HOH B:498
BINDING SITE FOR RESIDUE GOL B 311
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
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SCOP Domains
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CATH Domains
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Pfam Domains
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Chain B
Asymmetric Unit 1
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Show PDB file:
Asym.Unit (129 KB)
Header - Asym.Unit
Biol.Unit 1 (62 KB)
Header - Biol.Unit 1
Biol.Unit 2 (64 KB)
Header - Biol.Unit 2
Biol.Unit 3 (243 KB)
Header - Biol.Unit 3
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