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4KWD
Biol. Unit 2
Info
Asym.Unit (231 KB)
Biol.Unit 1 (117 KB)
Biol.Unit 2 (111 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF ASPERGILLUS TERREUS ARISTOLOCHENE SYNTHASE COMPLEXED WITH (1R,8R,9AS)-1,9A-DIMETHYL-8-(PROP-1-EN-2-YL) DECAHYDROQUINOLIZIN-5-IUM
Authors
:
M. Chen, N. Al-Lami, M. Janvier, E. L. D'Antonio, J. A. Faraldos, D. E. Ca R. K. Allemann, D. W. Christianson
Date
:
23 May 13 (Deposition) - 14 Aug 13 (Release) - 28 Aug 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.86
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Keywords
:
Class I Terpene Cyclase, Metal-Binding Motif, Farnesyl Diphosphate, Alpha-Helical Fold, Lyase-Lyase Inhibitor Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
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)
Reference
:
M. Chen, N. Al-Lami, M. Janvier, E. L. D'Antonio, J. A. Faraldos, D. E. Cane, R. K. Allemann, D. W. Christianson
Mechanistic Insights From The Binding Of Substrate And Carbocation Intermediate Analogues To Aristolochene Synthase.
Biochemistry V. 52 5441 2013
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Hetero Components
(3, 5)
Info
All Hetero Components
1a: GLYCEROL (GOLa)
1b: GLYCEROL (GOLb)
2a: (1R,5R,8R,9AS)-1,9A-DIMETHYL-8-(PR... (JF2a)
2b: (1R,5R,8R,9AS)-1,9A-DIMETHYL-8-(PR... (JF2b)
2c: (1R,5R,8R,9AS)-1,9A-DIMETHYL-8-(PR... (JF2c)
2d: (1R,5R,8R,9AS)-1,9A-DIMETHYL-8-(PR... (JF2d)
3a: MAGNESIUM ION (MGa)
3b: MAGNESIUM ION (MGb)
3c: MAGNESIUM ION (MGc)
3d: MAGNESIUM ION (MGd)
3e: MAGNESIUM ION (MGe)
3f: MAGNESIUM ION (MGf)
3g: MAGNESIUM ION (MGg)
3h: MAGNESIUM ION (MGh)
3i: MAGNESIUM ION (MGi)
3j: MAGNESIUM ION (MGj)
3k: MAGNESIUM ION (MGk)
3l: MAGNESIUM ION (MGl)
4a: PYROPHOSPHATE 2- (POPa)
4b: PYROPHOSPHATE 2- (POPb)
4c: PYROPHOSPHATE 2- (POPc)
4d: PYROPHOSPHATE 2- (POPd)
View:
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Label:
No.
Name
Count
Type
Full Name
1
GOL
1
Ligand/Ion
GLYCEROL
2
JF2
2
Ligand/Ion
(1R,5R,8R,9AS)-1,9A-DIMETHYL-8-(PROP-1-EN-2-YL)OCTAHYDRO-2H-QUINOLIZINIUM
3
MG
-1
Ligand/Ion
MAGNESIUM ION
4
POP
2
Ligand/Ion
PYROPHOSPHATE 2-
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Sites
(12, 12)
Info
All Sites
01: BC2 (SOFTWARE)
02: BC3 (SOFTWARE)
03: BC4 (SOFTWARE)
04: BC5 (SOFTWARE)
05: BC6 (SOFTWARE)
06: BC7 (SOFTWARE)
07: BC8 (SOFTWARE)
08: BC9 (SOFTWARE)
09: CC1 (SOFTWARE)
10: CC2 (SOFTWARE)
11: CC3 (SOFTWARE)
12: CC4 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
01
BC2
SOFTWARE
ARG B:107 , GLU B:142 , ARG B:149 , ARG C:197 , LEU C:275 , HOH C:629 , HOH C:631 , HOH C:634
BINDING SITE FOR RESIDUE GOL B 706
02
BC3
SOFTWARE
ASP C:84 , ARG C:169 , ASN C:213 , SER C:217 , LYS C:220 , GLU C:221 , ARG C:308 , TYR C:309 , MG C:402 , MG C:403 , MG C:404 , JF2 C:405 , HOH C:709 , HOH C:711 , HOH C:713 , HOH C:715 , HOH C:716 , HOH C:718 , HOH C:729
BINDING SITE FOR RESIDUE POP C 401
03
BC4
SOFTWARE
ASP C:84 , POP C:401 , MG C:403 , HOH C:709 , HOH C:711 , HOH C:713
BINDING SITE FOR RESIDUE MG C 402
04
BC5
SOFTWARE
ASP C:84 , POP C:401 , MG C:402 , HOH C:713 , HOH C:714 , HOH C:715 , HOH C:718
BINDING SITE FOR RESIDUE MG C 403
05
BC6
SOFTWARE
ARG C:169 , ASN C:213 , SER C:217 , GLU C:221 , POP C:401 , HOH C:717
BINDING SITE FOR RESIDUE MG C 404
06
BC7
SOFTWARE
TYR C:61 , PHE C:81 , VAL C:173 , LEU C:178 , LEU C:209 , ASN C:213 , ASN C:299 , POP C:401 , HOH C:729
BINDING SITE FOR RESIDUE JF2 C 405
07
BC8
SOFTWARE
ARG B:197 , LEU B:275 , HOH B:1027 , ARG C:107 , GLU C:142 , ARG C:149
BINDING SITE FOR RESIDUE GOL C 406
08
BC9
SOFTWARE
PHE D:81 , ASP D:84 , ARG D:169 , ASN D:213 , SER D:217 , LYS D:220 , GLU D:221 , ARG D:308 , TYR D:309 , MG D:402 , MG D:403 , MG D:404 , JF2 D:405 , HOH D:612 , HOH D:618 , HOH D:619 , HOH D:621 , HOH D:622 , HOH D:623 , HOH D:625
BINDING SITE FOR RESIDUE POP D 401
09
CC1
SOFTWARE
ASP D:84 , POP D:401 , MG D:403 , HOH D:605 , HOH D:619 , HOH D:622 , HOH D:625
BINDING SITE FOR RESIDUE MG D 402
10
CC2
SOFTWARE
ASP D:84 , POP D:401 , MG D:402 , HOH D:612 , HOH D:622 , HOH D:623
BINDING SITE FOR RESIDUE MG D 403
11
CC3
SOFTWARE
ASN D:213 , SER D:217 , GLU D:221 , POP D:401 , HOH D:621
BINDING SITE FOR RESIDUE MG D 404
12
CC4
SOFTWARE
TYR D:61 , PHE D:81 , PHE D:147 , VAL D:173 , LEU D:178 , ASN D:213 , ASN D:299 , POP D:401
BINDING SITE FOR RESIDUE JF2 D 405
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d4kwda_ (A:)
1b: SCOP_d4kwdb_ (B:)
1c: SCOP_d4kwdc_ (C:)
1d: SCOP_d4kwdd_ (D:)
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Class
:
All alpha proteins
(14657)
Fold
:
Terpenoid synthases
(196)
Superfamily
:
Terpenoid synthases
(196)
Family
:
Aristolochene/pentalenene synthase
(16)
Protein domain
:
automated matches
(11)
Aspergillus terreus [TaxId: 33178]
(11)
1a
d4kwda_
A:
1b
d4kwdb_
B:
1c
d4kwdc_
C:
1d
d4kwdd_
D:
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CATH Domains
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Pfam Domains
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Asymmetric Unit 1
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Show PDB file:
Asym.Unit (231 KB)
Header - Asym.Unit
Biol.Unit 1 (117 KB)
Header - Biol.Unit 1
Biol.Unit 2 (111 KB)
Header - Biol.Unit 2
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