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Asym. Unit
Info
Asym.Unit (227 KB)
Biol.Unit 1 (220 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF ORYZA SATIVA FATTY ACID ALPHA-DIOXYGENASE
Authors
:
G. Zhu, M. Koszelak-Rosenblum, M. G. Malkowski
Date
:
22 May 13 (Deposition) - 21 Aug 13 (Release) - 16 Oct 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.98
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Piox, Cox-Like Protein, Fatty Acid Alpha-Dioxygenase, Heme Binding, Calcium Binding, Monotopic Membrane Protein, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
G. Zhu, M. Koszelak-Rosenblum, M. G. Malkowski
Crystal Structures Of Alpha-Dioxygenase From Oryza Sativa: Insights Into Substrate Binding And Activation By Hydrogen Peroxide.
Protein Sci. V. 22 1432 2013
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Hetero Components
(9, 18)
Info
All Hetero Components
1a: PENTAETHYLENE GLYCOL (1PEa)
2a: CALCIUM ION (CAa)
3a: CHLORIDE ION (CLa)
3b: CHLORIDE ION (CLb)
3c: CHLORIDE ION (CLc)
3d: CHLORIDE ION (CLd)
4a: DECYL-BETA-D-MALTOPYRANOSIDE (DMUa)
5a: PROTOPORPHYRIN IX CONTAINING FE (HEMa)
6a: SODIUM ION (NAa)
6b: SODIUM ION (NAb)
7a: DI(HYDROXYETHYL)ETHER (PEGa)
7b: DI(HYDROXYETHYL)ETHER (PEGb)
7c: DI(HYDROXYETHYL)ETHER (PEGc)
7d: DI(HYDROXYETHYL)ETHER (PEGd)
8a: TETRAETHYLENE GLYCOL (PG4a)
8b: TETRAETHYLENE GLYCOL (PG4b)
8c: TETRAETHYLENE GLYCOL (PG4c)
9a: TRIETHYLENE GLYCOL (PGEa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
1PE
1
Ligand/Ion
PENTAETHYLENE GLYCOL
2
CA
1
Ligand/Ion
CALCIUM ION
3
CL
4
Ligand/Ion
CHLORIDE ION
4
DMU
1
Ligand/Ion
DECYL-BETA-D-MALTOPYRANOSIDE
5
HEM
1
Ligand/Ion
PROTOPORPHYRIN IX CONTAINING FE
6
NA
2
Ligand/Ion
SODIUM ION
7
PEG
4
Ligand/Ion
DI(HYDROXYETHYL)ETHER
8
PG4
3
Ligand/Ion
TETRAETHYLENE GLYCOL
9
PGE
1
Ligand/Ion
TRIETHYLENE GLYCOL
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Sites
(18, 18)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ALA A:149 , ILE A:152 , GLN A:153 , VAL A:156 , HIS A:157 , ASP A:161 , HIS A:162 , ASN A:260 , TRP A:262 , THR A:376 , TYR A:379 , MET A:381 , HIS A:382 , ILE A:416 , PHE A:453 , LEU A:472 , LEU A:475 , ARG A:479 , ARG A:483 , HOH A:815 , HOH A:843 , HOH A:996 , HOH A:1180
BINDING SITE FOR RESIDUE HEM A 701
02
AC2
SOFTWARE
SER A:19 , LYS A:20 , MET A:21 , SER A:22 , PHE A:23 , LYS A:26 , PHE A:31 , ARG A:38 , ILE A:348 , PG4 A:709 , HOH A:829 , HOH A:928 , HOH A:1055
BINDING SITE FOR RESIDUE DMU A 702
03
AC3
SOFTWARE
ASN A:54 , ARG A:57
BINDING SITE FOR RESIDUE PG4 A 703
04
AC4
SOFTWARE
PHE A:24
BINDING SITE FOR RESIDUE PEG A 704
05
AC5
SOFTWARE
ASN A:39 , HIS A:42 , LYS A:43 , ARG A:492 , ILE A:498 , PRO A:499 , ILE A:500 , ASP A:505 , GLU A:536 , NA A:717 , HOH A:832 , HOH A:1029 , HOH A:1117
BINDING SITE FOR RESIDUE 1PE A 705
06
AC6
SOFTWARE
GLU A:490 , ARG A:493 , ARG A:494 , PHE A:496
BINDING SITE FOR RESIDUE PGE A 706
07
AC7
SOFTWARE
ARG A:590 , LYS A:606 , SER A:608 , TYR A:618 , NA A:718
BINDING SITE FOR RESIDUE PG4 A 707
08
AC8
SOFTWARE
ILE A:239 , GLY A:240 , ASP A:241 , GLY A:243 , LYS A:274
BINDING SITE FOR RESIDUE PEG A 708
09
AC9
SOFTWARE
ALA A:34 , PHE A:35 , ARG A:38 , DMU A:702 , HOH A:1119
BINDING SITE FOR RESIDUE PG4 A 709
10
BC1
SOFTWARE
LYS A:323 , ARG A:326 , HOH A:1023 , HOH A:1028
BINDING SITE FOR RESIDUE PEG A 710
11
BC2
SOFTWARE
ARG A:517 , ALA A:518 , ILE A:519
BINDING SITE FOR RESIDUE PEG A 711
12
BC3
SOFTWARE
THR A:210 , TRP A:212 , ASP A:214 , SER A:216 , HOH A:874 , HOH A:1085
BINDING SITE FOR RESIDUE CA A 712
13
BC4
SOFTWARE
LYS A:309 , TRP A:333 , HOH A:1132
BINDING SITE FOR RESIDUE CL A 713
14
BC5
SOFTWARE
ARG A:330 , LYS A:339 , HOH A:954
BINDING SITE FOR RESIDUE CL A 714
15
BC6
SOFTWARE
GLY A:350 , ILE A:352 , LEU A:353 , HOH A:922
BINDING SITE FOR RESIDUE CL A 715
16
BC7
SOFTWARE
HIS A:311 , TYR A:379
BINDING SITE FOR RESIDUE CL A 716
17
BC8
SOFTWARE
ASP A:505 , 1PE A:705 , HOH A:980 , HOH A:981 , HOH A:1117
BINDING SITE FOR RESIDUE NA A 717
18
BC9
SOFTWARE
SER A:608 , PG4 A:707 , HOH A:1228
BINDING SITE FOR RESIDUE NA A 718
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
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SCOP Domains
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CATH Domains
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Pfam Domains
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Chain A
Asymmetric Unit 1
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