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4KVJ
Asym. Unit
Info
Asym.Unit (221 KB)
Biol.Unit 1 (214 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF ORYZA SATIVA FATTY ACID ALPHA-DIOXYGENASE WITH HYDROGEN PEROXIDE
Authors
:
G. Zhu, M. Koszelak-Rosenblum, M. G. Malkowski
Date
:
22 May 13 (Deposition) - 21 Aug 13 (Release) - 16 Oct 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.12
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Piox, Cox-Like Protein, Fatty Acid Alpha-Dioxygenase, Heme Binding, Calcium Binding, Monotopic Membrane Protein, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
G. Zhu, M. Koszelak-Rosenblum, M. G. Malkowski
Crystal Structures Of Alpha-Dioxygenase From Oryza Sativa: Insights Into Substrate Binding And Activation By Hydrogen Peroxide.
Protein Sci. V. 22 1432 2013
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Hetero Components
(10, 21)
Info
All Hetero Components
01a: CALCIUM ION (CAa)
02a: CHLORIDE ION (CLa)
02b: CHLORIDE ION (CLb)
02c: CHLORIDE ION (CLc)
02d: CHLORIDE ION (CLd)
03a: DECYL-BETA-D-MALTOPYRANOSIDE (DMUa)
04a: PROTOPORPHYRIN IX CONTAINING FE (HEMa)
05a: SODIUM ION (NAa)
05b: SODIUM ION (NAb)
06a: 3,6,9,12,15,18-HEXAOXAICOSANE-1,20... (P33a)
07a: DI(HYDROXYETHYL)ETHER (PEGa)
07b: DI(HYDROXYETHYL)ETHER (PEGb)
07c: DI(HYDROXYETHYL)ETHER (PEGc)
07d: DI(HYDROXYETHYL)ETHER (PEGd)
07e: DI(HYDROXYETHYL)ETHER (PEGe)
07f: DI(HYDROXYETHYL)ETHER (PEGf)
07g: DI(HYDROXYETHYL)ETHER (PEGg)
08a: HYDROGEN PEROXIDE (PEOa)
09a: TETRAETHYLENE GLYCOL (PG4a)
09b: TETRAETHYLENE GLYCOL (PG4b)
10a: TRIETHYLENE GLYCOL (PGEa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
1
Ligand/Ion
CALCIUM ION
2
CL
4
Ligand/Ion
CHLORIDE ION
3
DMU
1
Ligand/Ion
DECYL-BETA-D-MALTOPYRANOSIDE
4
HEM
1
Ligand/Ion
PROTOPORPHYRIN IX CONTAINING FE
5
NA
2
Ligand/Ion
SODIUM ION
6
P33
1
Ligand/Ion
3,6,9,12,15,18-HEXAOXAICOSANE-1,20-DIOL
7
PEG
7
Ligand/Ion
DI(HYDROXYETHYL)ETHER
8
PEO
1
Ligand/Ion
HYDROGEN PEROXIDE
9
PG4
2
Ligand/Ion
TETRAETHYLENE GLYCOL
10
PGE
1
Ligand/Ion
TRIETHYLENE GLYCOL
[
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Sites
(20, 20)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ALA A:149 , ILE A:152 , GLN A:153 , ASP A:161 , HIS A:162 , ASN A:260 , TRP A:262 , THR A:376 , TYR A:379 , ARG A:380 , HIS A:382 , ILE A:416 , PHE A:453 , LEU A:472 , LEU A:475 , ARG A:479 , ARG A:483 , PEO A:719 , HOH A:843 , HOH A:932 , HOH A:1048
BINDING SITE FOR RESIDUE HEM A 701
02
AC2
SOFTWARE
SER A:19 , LYS A:20 , MET A:21 , SER A:22 , PHE A:23 , PHE A:24 , LYS A:26 , PHE A:31 , ARG A:38 , LEU A:51 , ILE A:348 , LEU A:353 , PEG A:704 , PEG A:709 , HOH A:813 , HOH A:973 , HOH A:1102
BINDING SITE FOR RESIDUE DMU A 702
03
AC3
SOFTWARE
PRO A:47 , LEU A:50 , ARG A:57 , ALA A:328 , ILE A:352
BINDING SITE FOR RESIDUE PG4 A 703
04
AC4
SOFTWARE
GLY A:28 , DMU A:702 , PEG A:712
BINDING SITE FOR RESIDUE PEG A 704
05
AC5
SOFTWARE
LYS A:37 , ASN A:39 , LYS A:43 , ARG A:492 , ILE A:498 , PRO A:499 , ASP A:505 , GLU A:546 , NA A:720 , HOH A:848 , HOH A:969 , HOH A:1082 , HOH A:1083
BINDING SITE FOR RESIDUE P33 A 705
06
AC6
SOFTWARE
GLU A:490 , ARG A:493 , ARG A:494
BINDING SITE FOR RESIDUE PGE A 706
07
AC7
SOFTWARE
ARG A:590 , LYS A:606 , SER A:608 , NA A:721 , HOH A:1004
BINDING SITE FOR RESIDUE PG4 A 707
08
AC8
SOFTWARE
ILE A:239 , GLY A:240 , GLY A:243 , LYS A:274 , ASN A:455
BINDING SITE FOR RESIDUE PEG A 708
09
AC9
SOFTWARE
PHE A:345 , DMU A:702 , HOH A:1081
BINDING SITE FOR RESIDUE PEG A 709
10
BC1
SOFTWARE
LYS A:323 , ARG A:326 , HOH A:871
BINDING SITE FOR RESIDUE PEG A 710
11
BC2
SOFTWARE
PEG A:704 , HOH A:1087
BINDING SITE FOR RESIDUE PEG A 712
12
BC3
SOFTWARE
HIS A:42 , LYS A:43 , ARG A:330 , HOH A:852 , HOH A:1091 , HOH A:1106
BINDING SITE FOR RESIDUE PEG A 713
13
BC4
SOFTWARE
ASP A:158 , THR A:210 , TRP A:212 , ASP A:214 , SER A:216
BINDING SITE FOR RESIDUE CA A 714
14
BC5
SOFTWARE
LYS A:309 , TRP A:333
BINDING SITE FOR RESIDUE CL A 715
15
BC6
SOFTWARE
ARG A:330 , LYS A:339 , HOH A:896
BINDING SITE FOR RESIDUE CL A 716
16
BC7
SOFTWARE
GLY A:350 , ILE A:352 , LEU A:353 , HOH A:1013
BINDING SITE FOR RESIDUE CL A 717
17
BC8
SOFTWARE
HIS A:311 , TYR A:379 , ARG A:559 , HOH A:886
BINDING SITE FOR RESIDUE CL A 718
18
BC9
SOFTWARE
GLN A:153 , HIS A:157 , ASN A:260 , HEM A:701
BINDING SITE FOR RESIDUE PEO A 719
19
CC1
SOFTWARE
ASP A:505 , P33 A:705 , HOH A:969 , HOH A:1083
BINDING SITE FOR RESIDUE NA A 720
20
CC2
SOFTWARE
SER A:608 , PG4 A:707 , HOH A:1004
BINDING SITE FOR RESIDUE NA A 721
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
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CATH Domains
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Pfam Domains
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Chain A
Asymmetric Unit 1
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Asym.Unit (221 KB)
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Biol.Unit 1 (214 KB)
Header - Biol.Unit 1
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