PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
No precomputed SNP/Variant structure found.
Calculating the structure may take several minutes.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
4KQ2
Asym. Unit
Info
Asym.Unit (433 KB)
Biol.Unit 1 (424 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
GLUCOSE1,2CYCLIC PHOSPHATE BOUND ACTIVATED STATE OF YEAST GLYCOGEN SYNTHASE
Authors
:
V. M. Chikwana, T. D. Hurley
Date
:
14 May 13 (Deposition) - 11 Dec 13 (Release) - 12 Nov 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.95
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Glucosyltransferase, Gt-B, Rossmann Fold, Glycosyltransferase, Glucosylation, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
V. M. Chikwana, M. Khanna, S. Baskaran, V. S. Tagliabracci, C. J. Contreras, A. Depaoli-Roach, P. J. Roach, T. D. Hurley
Structural Basis For 2'-Phosphate Incorporation Into Glycogen By Glycogen Synthase.
Proc. Natl. Acad. Sci. Usa V. 110 20976 2013
[
close entry info
]
Hetero Components
(5, 20)
Info
All Hetero Components
1a: (2R,3AR,5R,6S,7S,7AR)-5-(HYDROXYME... (1S3a)
2a: BARIUM ION (BAa)
2b: BARIUM ION (BAb)
2c: BARIUM ION (BAc)
2d: BARIUM ION (BAd)
2e: BARIUM ION (BAe)
2f: BARIUM ION (BAf)
2g: BARIUM ION (BAg)
3a: ALPHA-D-GLUCOSE-6-PHOSPHATE (G6Pa)
3b: ALPHA-D-GLUCOSE-6-PHOSPHATE (G6Pb)
3c: ALPHA-D-GLUCOSE-6-PHOSPHATE (G6Pc)
3d: ALPHA-D-GLUCOSE-6-PHOSPHATE (G6Pd)
4a: DI(HYDROXYETHYL)ETHER (PEGa)
4b: DI(HYDROXYETHYL)ETHER (PEGb)
4c: DI(HYDROXYETHYL)ETHER (PEGc)
4d: DI(HYDROXYETHYL)ETHER (PEGd)
5a: URIDINE-5'-MONOPHOSPHATE (U5Pa)
5b: URIDINE-5'-MONOPHOSPHATE (U5Pb)
5c: URIDINE-5'-MONOPHOSPHATE (U5Pc)
5d: URIDINE-5'-MONOPHOSPHATE (U5Pd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
1S3
1
Ligand/Ion
(2R,3AR,5R,6S,7S,7AR)-5-(HYDROXYMETHYL)TETRAHYDRO-3AH-[1,3,2]DIOXAPHOSPHOLO[4,5-B]PYRAN-2,6,7-TRIOL 2-OXIDE
2
BA
7
Ligand/Ion
BARIUM ION
3
G6P
4
Ligand/Ion
ALPHA-D-GLUCOSE-6-PHOSPHATE
4
PEG
4
Ligand/Ion
DI(HYDROXYETHYL)ETHER
5
U5P
4
Ligand/Ion
URIDINE-5'-MONOPHOSPHATE
[
close Hetero Component info
]
Sites
(19, 19)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ARG A:320 , LYS A:326 , PHE A:480 , LEU A:481 , TYR A:492 , TYR A:513 , THR A:514 , GLU A:517
BINDING SITE FOR RESIDUE U5P A 801
02
AC2
SOFTWARE
GLN A:283 , HIS A:286 , LYS A:290 , HIS A:500 , ARG A:580 , ARG A:583 , ARG A:587 , HIS D:280 , GLU D:281
BINDING SITE FOR RESIDUE G6P A 802
03
AC3
SOFTWARE
LYS A:391 , PHE A:394
BINDING SITE FOR RESIDUE PEG A 803
04
AC4
SOFTWARE
GLN A:38
BINDING SITE FOR RESIDUE BA A 804
05
AC5
SOFTWARE
ARG B:320 , LYS B:326 , PHE B:480 , LEU B:481 , TYR B:492 , THR B:514 , GLU B:517
BINDING SITE FOR RESIDUE U5P B 801
06
AC6
SOFTWARE
GLN B:283 , ASN B:284 , HIS B:286 , LYS B:290 , HIS B:500 , ARG B:580 , ARG B:583 , ARG B:587 , HIS C:280
BINDING SITE FOR RESIDUE G6P B 802
07
AC7
SOFTWARE
GLU A:379 , LYS B:391
BINDING SITE FOR RESIDUE PEG B 803
08
AC8
SOFTWARE
GLN B:38 , LYS B:40
BINDING SITE FOR RESIDUE BA B 804
09
AC9
SOFTWARE
ASP B:539
BINDING SITE FOR RESIDUE BA B 805
10
BC1
SOFTWARE
GLY C:23 , HIS C:193 , ARG C:199 , ASN C:269 , ARG C:320 , GLU C:509 , PRO C:510 , TRP C:511 , GLY C:512 , U5P C:802
BINDING SITE FOR RESIDUE 1S3 C 801
11
BC2
SOFTWARE
ARG C:20 , ARG C:320 , LYS C:326 , VAL C:356 , PHE C:480 , LEU C:481 , TYR C:492 , TYR C:513 , THR C:514 , GLU C:517 , 1S3 C:801
BINDING SITE FOR RESIDUE U5P C 802
12
BC3
SOFTWARE
HIS B:280 , GLN C:283 , ASN C:284 , HIS C:286 , ALA C:287 , LYS C:290 , HIS C:500 , ARG C:580 , ARG C:583 , ARG C:587
BINDING SITE FOR RESIDUE G6P C 803
13
BC4
SOFTWARE
LYS C:391 , PHE C:394 , GLU D:291 , GLU D:379
BINDING SITE FOR RESIDUE PEG C 804
14
BC5
SOFTWARE
GLN C:38
BINDING SITE FOR RESIDUE BA C 805
15
BC6
SOFTWARE
GLY D:319 , ARG D:320 , LYS D:326 , PHE D:480 , LEU D:481 , TYR D:492 , THR D:514 , GLU D:517
BINDING SITE FOR RESIDUE U5P D 801
16
BC7
SOFTWARE
HIS A:280 , GLN D:283 , HIS D:286 , LYS D:290 , HIS D:500 , ARG D:580 , ARG D:583 , ARG D:587
BINDING SITE FOR RESIDUE G6P D 802
17
BC8
SOFTWARE
GLU C:291 , GLY D:390 , LYS D:391
BINDING SITE FOR RESIDUE PEG D 803
18
BC9
SOFTWARE
GLN D:38
BINDING SITE FOR RESIDUE BA D 804
19
CC1
SOFTWARE
ASP D:539
BINDING SITE FOR RESIDUE BA D 805
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
Select:
Label:
End label:
Sorry, no Info available
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
Select:
Label:
Sorry, no Info available
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Chain C
Chain D
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (433 KB)
Header - Asym.Unit
Biol.Unit 1 (424 KB)
Header - Biol.Unit 1
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
4KQ2
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help