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Asym. Unit
Info
Asym.Unit (91 KB)
Biol.Unit 1 (84 KB)
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(1)
Title
:
COMPLEX OF 4'-SULFO-LEWIS-X WITH A SELECTIN-LIKE MUTANT OF MANNOSE-BINDING PROTEIN A
Authors
:
K. K. -S. Ng, W. I. Weis
Date
:
07 Nov 96 (Deposition) - 12 Feb 97 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : 1,2,3
Biol. Unit 1: 1,2,3 (1x)
Keywords
:
Lectin
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
K. K. Ng, W. I. Weis
Structure Of A Selectin-Like Mutant Of Mannose-Binding Protein Complexed With Sialylated And Sulfated Lewis(X) Oligosaccharides.
Biochemistry V. 36 979 1997
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(6, 23)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
1c: CALCIUM ION (CAc)
1d: CALCIUM ION (CAd)
1e: CALCIUM ION (CAe)
1f: CALCIUM ION (CAf)
1g: CALCIUM ION (CAg)
1h: CALCIUM ION (CAh)
1i: CALCIUM ION (CAi)
1j: CALCIUM ION (CAj)
1k: CALCIUM ION (CAk)
2a: CHLORIDE ION (CLa)
2b: CHLORIDE ION (CLb)
2c: CHLORIDE ION (CLc)
3a: ALPHA-L-FUCOSE (FUCa)
3b: ALPHA-L-FUCOSE (FUCb)
3c: ALPHA-L-FUCOSE (FUCc)
3d: ALPHA-L-FUCOSE (FUCd)
4a: 4-O-SULFO-BETA-D-GALACTOPYRANOSE (G4Sa)
4b: 4-O-SULFO-BETA-D-GALACTOPYRANOSE (G4Sb)
5a: BETA-METHYL-N-ACETYL-D-GLUCOSAMINE (MAGa)
5b: BETA-METHYL-N-ACETYL-D-GLUCOSAMINE (MAGb)
6a: ZINC ION (ZNa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
11
Ligand/Ion
CALCIUM ION
2
CL
3
Ligand/Ion
CHLORIDE ION
3
FUC
4
Ligand/Ion
ALPHA-L-FUCOSE
4
G4S
2
Ligand/Ion
4-O-SULFO-BETA-D-GALACTOPYRANOSE
5
MAG
2
Ligand/Ion
BETA-METHYL-N-ACETYL-D-GLUCOSAMINE
6
ZN
1
Ligand/Ion
ZINC ION
[
close Hetero Component info
]
Sites
(32, 32)
Info
All Sites
01: 11 (UNKNOWN)
02: 11_01 (UNKNOWN)
03: 12 (UNKNOWN)
04: 12_02 (UNKNOWN)
05: 13 (UNKNOWN)
06: 13_03 (UNKNOWN)
07: 21 (UNKNOWN)
08: 21_04 (UNKNOWN)
09: 22 (UNKNOWN)
10: 22_05 (UNKNOWN)
11: 23 (UNKNOWN)
12: 23_06 (UNKNOWN)
13: 31 (UNKNOWN)
14: 31_07 (UNKNOWN)
15: 32 (UNKNOWN)
16: 32_08 (UNKNOWN)
17: 33 (UNKNOWN)
18: AC1 (SOFTWARE)
19: AC5 (SOFTWARE)
20: AC6 (SOFTWARE)
21: AC7 (SOFTWARE)
22: AC8 (SOFTWARE)
23: AC9 (SOFTWARE)
24: BC1 (SOFTWARE)
25: BC2 (SOFTWARE)
26: BC6 (SOFTWARE)
27: BC7 (SOFTWARE)
28: BC8 (SOFTWARE)
29: BC9 (SOFTWARE)
30: CC1 (SOFTWARE)
31: CC2 (SOFTWARE)
32: CC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
11
UNKNOWN
CA 1:1 , ASP 1:161 , GLU 1:165 , ASP 1:188 , GLU 1:193 , ASP 1:194 , HOH 2:349
CA SITE 1, PROTOMER 1.
02
11_01
UNKNOWN
CA 1:1 , ASP 1:161 , GLU 1:165 , ASP 1:188 , GLU 1:193 , ASP 1:194 , HOH 2:349
CA SITE 1, PROTOMER 1.
03
12
UNKNOWN
CA 2:1 , ASP 2:161 , GLU 2:165 , ASP 2:188 , GLU 2:193 , ASP 2:194 , HOH 3:241
CA SITE 1, PROTOMER 2.
04
12_02
UNKNOWN
CA 2:1 , ASP 2:161 , GLU 2:165 , ASP 2:188 , GLU 2:193 , ASP 2:194 , HOH 3:241
CA SITE 1, PROTOMER 2.
05
13
UNKNOWN
CA 3:1 , ASP 3:161 , GLU 3:165 , ASP 3:188 , GLU 3:193 , ASP 3:194 , HOH 2:285
CA SITE 1, PROTOMER 3.
06
13_03
UNKNOWN
CA 3:1 , ASP 3:161 , GLU 3:165 , ASP 3:188 , GLU 3:193 , ASP 3:194 , HOH 2:285
CA SITE 1, PROTOMER 3.
07
21
UNKNOWN
CA 1:2 , GLU 1:185 , ASN 1:187 , GLU 1:193 , ASN 1:205 , ASP 1:206 , HOH 2:340
CA SITE 2, PROTOMER 1.
08
21_04
UNKNOWN
CA 1:2 , GLU 1:185 , ASN 1:187 , GLU 1:193 , ASN 1:205 , ASP 1:206 , HOH 2:340
CA SITE 2, PROTOMER 1.
09
22
UNKNOWN
CA 2:2 , GLU 2:185 , ASN 2:187 , GLU 2:193 , ASN 2:205 , ASP 2:206 , HOH 3:248
CA SITE 2, PROTOMER 2.
10
22_05
UNKNOWN
CA 2:2 , GLU 2:185 , ASN 2:187 , GLU 2:193 , ASN 2:205 , ASP 2:206 , HOH 3:248
CA SITE 2, PROTOMER 2.
11
23
UNKNOWN
CA 3:2 , GLU 3:185 , ASN 3:187 , GLU 3:193 , ASN 3:205 , ASP 3:206 , HOH 2:277 , HOH 2:278
CA SITE 2, PROTOMER 3.
12
23_06
UNKNOWN
CA 3:2 , GLU 3:185 , ASN 3:187 , GLU 3:193 , ASN 3:205 , ASP 3:206 , HOH 2:277 , HOH 2:278
CA SITE 2, PROTOMER 3.
13
31
UNKNOWN
CA 1:3 , GLU 1:165 , ASP 1:194 , HOH 2:350 , HOH 2:356 , HOH 1:370
CA SITE 3, PROTOMER 1.
14
31_07
UNKNOWN
CA 1:3 , GLU 1:165 , ASP 1:194 , HOH 2:350 , HOH 2:356 , HOH 1:370
CA SITE 3, PROTOMER 1.
15
32
UNKNOWN
CA 2:3 , GLU 2:165 , ASP 2:194 , HOH 3:242
CA SITE 3, PROTOMER 2.
16
32_08
UNKNOWN
CA 2:3 , GLU 2:165 , ASP 2:194 , HOH 3:242
CA SITE 3, PROTOMER 2.
17
33
UNKNOWN
CA 3:3 , GLU 3:165 , ASP 3:194 , HOH 3:351
CA SITE 3, PROTOMER 3.
18
AC1
SOFTWARE
HIS 1:189 , GLU 1:193 , LYS 1:211 , MAG 1:223 , FUC 1:224
BINDING SITE FOR RESIDUE G4S 1 222
19
AC5
SOFTWARE
CA 3:2 , GLU 3:185 , ASN 3:187 , GLU 3:193 , ASN 3:205 , ASP 3:206
BINDING SITE FOR RESIDUE FUC 3 222
20
AC6
SOFTWARE
CA 1:5 , GLU 1:82 , ASN 1:86 , LYS 3:77 , ASP 3:194 , MAG 3:224 , FUC 3:225 , HOH 3:270 , HOH 3:271 , HOH 3:273 , HOH 3:274 , HOH 3:337
BINDING SITE FOR RESIDUE G4S 3 223
21
AC7
SOFTWARE
HOH 1:232 , ASN 3:80 , GLU 3:162 , G4S 3:223 , FUC 3:225
BINDING SITE FOR RESIDUE MAG 3 224
22
AC8
SOFTWARE
GLN 3:210 , G4S 3:223 , MAG 3:224
BINDING SITE FOR RESIDUE FUC 3 225
23
AC9
SOFTWARE
ASP 1:161 , GLU 1:165 , ASP 1:188 , GLU 1:193 , ASP 1:194 , HOH 1:271
BINDING SITE FOR RESIDUE CA 1 1
24
BC1
SOFTWARE
GLU 1:185 , ASN 1:187 , GLU 1:193 , ASN 1:205 , ASP 1:206 , FUC 1:224
BINDING SITE FOR RESIDUE CA 1 2
25
BC2
SOFTWARE
GLU 1:84 , GLU 1:165 , ASP 1:194 , HOH 1:272 , HOH 1:276 , HOH 1:277
BINDING SITE FOR RESIDUE CA 1 3
26
BC6
SOFTWARE
HIS 1:99 , HIS 2:99 , HIS 3:99 , HOH 3:285
BINDING SITE FOR RESIDUE ZN 1 7
27
BC7
SOFTWARE
ASP 2:161 , GLU 2:165 , ASP 2:188 , GLU 2:193 , ASP 2:194 , HOH 2:340
BINDING SITE FOR RESIDUE CA 2 1
28
BC8
SOFTWARE
GLU 2:185 , ASN 2:187 , GLU 2:193 , ASN 2:205 , ASP 2:206 , FUC 2:222
BINDING SITE FOR RESIDUE CA 2 2
29
BC9
SOFTWARE
GLU 2:165 , ASP 2:194 , HOH 2:223 , HOH 2:224 , HOH 2:225
BINDING SITE FOR RESIDUE CA 2 3
30
CC1
SOFTWARE
ASP 2:194 , CYS 2:209
BINDING SITE FOR RESIDUE CL 2 4
31
CC2
SOFTWARE
ASP 3:161 , GLU 3:165 , ASP 3:188 , GLU 3:193 , ASP 3:194 , HOH 3:338
BINDING SITE FOR RESIDUE CA 3 1
32
CC3
SOFTWARE
GLU 3:185 , ASN 3:187 , GLU 3:193 , ASN 3:205 , ASP 3:206 , FUC 3:222
BINDING SITE FOR RESIDUE CA 3 2
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
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Sorry, no Info available
[
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
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Label:
End label:
Sorry, no Info available
[
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]
Exons
(0, 0)
Info
All Exons
View:
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Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 6)
Info
All SCOP Domains
1a: SCOP_d4kmb11 (1:105-221)
1b: SCOP_d4kmb21 (2:105-221)
1c: SCOP_d4kmb31 (3:105-221)
2a: SCOP_d4kmb12 (1:73-104)
2b: SCOP_d4kmb22 (2:73-104)
2c: SCOP_d4kmb32 (3:73-104)
View:
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Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
C-type lectin-like
(322)
Superfamily
:
C-type lectin-like
(322)
Family
:
C-type lectin domain
(182)
Protein domain
:
Mannose-binding protein A, C-lectin domain
(39)
Norway rat (Rattus norvegicus) [TaxId: 10116]
(38)
1a
d4kmb11
1:105-221
1b
d4kmb21
2:105-221
1c
d4kmb31
3:105-221
Class
:
Coiled coil proteins
(689)
Fold
:
Parallel coiled-coil
(407)
Superfamily
:
Triple coiled coil domain of C-type lectins
(54)
Family
:
Triple coiled coil domain of C-type lectins
(54)
Protein domain
:
Mannose-binding protein A
(23)
Norway rat (Rattus norvegicus) [TaxId: 10116]
(22)
2a
d4kmb12
1:73-104
2b
d4kmb22
2:73-104
2c
d4kmb32
3:73-104
[
close SCOP info
]
CATH Domains
(1, 3)
Info
all CATH domains
1a: CATH_4kmb100 (1:73-221)
1b: CATH_4kmb200 (2:73-221)
1c: CATH_4kmb300 (3:73-221)
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)
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)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Roll
(3276)
Topology
:
Mannose-Binding Protein A; Chain A
(180)
Homologous Superfamily
:
Mannose-Binding Protein A, subunit A
(180)
Norway rat (Rattus norvegicus)
(32)
1a
4kmb100
1:73-221
1b
4kmb200
2:73-221
1c
4kmb300
3:73-221
[
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]
Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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