PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
No precomputed SNP/Variant structure found.
Calculating the structure may take several minutes.
PLEASE WAIT...
Getting 'PROSITE' information from database.
4KKI
Biol. Unit 1
Info
Asym.Unit (144 KB)
Biol.Unit 1 (137 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
CRYSTAL STRUCTURE OF HAPTOCORRIN IN COMPLEX WITH CNCBL
Authors
:
E. Furger, D. C. Frei, R. Schibli, E. Fischer, A. E. Prota
Date
:
06 May 13 (Deposition) - 17 Jul 13 (Release) - 09 Oct 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.35
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Cobalamin Transport Protein, Alpha6-Alpha6 Helical Barrel, Transport Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
E. Furger, D. C. Frei, R. Schibli, E. Fischer, A. E. Prota
Structural Basis For Universal Corrinoid Recognition By The Cobalamin Transport Protein Haptocorrin.
J. Biol. Chem. V. 288 25466 2013
[
close entry info
]
Hetero Components
(3, 19)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
2a: CO-CYANOCOBALAMIN (CNCa)
3a: N-ACETYL-D-GLUCOSAMINE (NAGa)
3b: N-ACETYL-D-GLUCOSAMINE (NAGb)
3c: N-ACETYL-D-GLUCOSAMINE (NAGc)
3d: N-ACETYL-D-GLUCOSAMINE (NAGd)
3e: N-ACETYL-D-GLUCOSAMINE (NAGe)
3f: N-ACETYL-D-GLUCOSAMINE (NAGf)
3g: N-ACETYL-D-GLUCOSAMINE (NAGg)
4a: DI(HYDROXYETHYL)ETHER (PEGa)
4b: DI(HYDROXYETHYL)ETHER (PEGb)
4c: DI(HYDROXYETHYL)ETHER (PEGc)
4d: DI(HYDROXYETHYL)ETHER (PEGd)
4e: DI(HYDROXYETHYL)ETHER (PEGe)
4f: DI(HYDROXYETHYL)ETHER (PEGf)
4g: DI(HYDROXYETHYL)ETHER (PEGg)
4h: DI(HYDROXYETHYL)ETHER (PEGh)
4i: DI(HYDROXYETHYL)ETHER (PEGi)
4j: DI(HYDROXYETHYL)ETHER (PEGj)
4k: DI(HYDROXYETHYL)ETHER (PEGk)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
-1
Ligand/Ion
CALCIUM ION
2
CNC
1
Ligand/Ion
CO-CYANOCOBALAMIN
3
NAG
7
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
4
PEG
11
Ligand/Ion
DI(HYDROXYETHYL)ETHER
[
close Hetero Component info
]
Sites
(20, 20)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLN A:44 , GLN A:46 , ASN A:84 , GLU A:86 , SER A:287 , ILE A:319 , ASN A:320 , TRP A:407
BINDING SITE FOR RESIDUE NAG A 501
02
AC2
SOFTWARE
ASP A:97 , GLU A:100 , ASN A:101 , ASN A:326 , THR A:328 , NAG A:505
BINDING SITE FOR RESIDUE NAG A 502
03
AC3
SOFTWARE
LYS A:14 , ASN A:18 , GLN A:22 , ILE A:294 , ASN A:346 , THR A:348
BINDING SITE FOR RESIDUE NAG A 503
04
AC4
SOFTWARE
ASP A:187 , GLU A:188 , SER A:190 , ASN A:193
BINDING SITE FOR RESIDUE NAG A 504
05
AC5
SOFTWARE
ASN A:293 , NAG A:502 , HOH A:669
BINDING SITE FOR RESIDUE NAG A 505
06
AC6
SOFTWARE
ILE A:311 , ASN A:331
BINDING SITE FOR RESIDUE NAG A 506
07
AC7
SOFTWARE
ASN A:314 , SER A:316 , THR A:322 , PHE A:324 , ASN A:402
BINDING SITE FOR RESIDUE NAG A 507
08
AC8
SOFTWARE
GLY A:70 , GLU A:71 , THR A:119 , ASN A:120 , TYR A:122 , GLN A:123 , PHE A:156 , ASP A:163 , ASN A:217 , PHE A:219 , SER A:220 , GLN A:266 , TRP A:359 , GLY A:360 , PRO A:361 , TYR A:362 , ILE A:363 , ASN A:373 , TYR A:378 , TRP A:379 , GLU A:380 , LEU A:381 , LEU A:388 , SER A:389 , GLN A:390 , GLY A:391 , TYR A:410 , PEG A:519 , HOH A:602 , HOH A:603 , HOH A:631 , HOH A:668 , HOH A:720 , HOH A:721 , HOH A:723 , HOH A:734
BINDING SITE FOR RESIDUE CNC A 508
09
AC9
SOFTWARE
HOH A:725
BINDING SITE FOR RESIDUE CA A 509
10
BC1
SOFTWARE
THR A:173 , LYS A:177 , ILE A:180 , VAL A:230 , ASP A:233 , TYR A:234 , PEG A:511
BINDING SITE FOR RESIDUE PEG A 510
11
BC2
SOFTWARE
LYS A:177 , ASP A:233 , TYR A:235 , PEG A:510
BINDING SITE FOR RESIDUE PEG A 511
12
BC3
SOFTWARE
LEU A:40 , GLY A:42 , VAL A:81 , LYS A:274 , ASP A:278
BINDING SITE FOR RESIDUE PEG A 512
13
BC4
SOFTWARE
GLY A:42 , ILE A:43
BINDING SITE FOR RESIDUE PEG A 513
14
BC5
SOFTWARE
CYS A:132 , LEU A:133 , ASN A:135 , GLN A:183
BINDING SITE FOR RESIDUE PEG A 514
15
BC6
SOFTWARE
LYS A:199 , GLU A:203
BINDING SITE FOR RESIDUE PEG A 515
16
BC7
SOFTWARE
GLN A:255
BINDING SITE FOR RESIDUE PEG A 516
17
BC8
SOFTWARE
ASN A:26 , PRO A:261 , GLU A:356 , ARG A:357 , SER A:358 , GLY A:360
BINDING SITE FOR RESIDUE PEG A 517
18
BC9
SOFTWARE
ASN A:372 , ASN A:374 , ASP A:375
BINDING SITE FOR RESIDUE PEG A 518
19
CC1
SOFTWARE
ASN A:217 , LEU A:388 , SER A:389 , CNC A:508
BINDING SITE FOR RESIDUE PEG A 519
20
CC2
SOFTWARE
SER A:30 , VAL A:32 , ASN A:59 , GLU A:71 , LEU A:74 , HOH A:733
BINDING SITE FOR RESIDUE PEG A 520
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(, 0)
Info
All PROSITE Patterns/Profiles
;
View:
Select:
Label:
End label:
Sorry, no Info available
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
Select:
Label:
Sorry, no Info available
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (144 KB)
Header - Asym.Unit
Biol.Unit 1 (137 KB)
Header - Biol.Unit 1
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
4KKI
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help
