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4KI8
Asym. Unit
Info
Asym.Unit (1.2 MB)
Biol.Unit 1, α-C (1.2 MB)
Biol.Unit 1 (1.2 MB)
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(1)
Title
:
CRYSTAL STRUCTURE OF A GROEL-ADP COMPLEX IN THE RELAXED ALLOSTERIC STATE
Authors
:
X. Fei, D. Yang, N. Laronde-Leblanc, G. H. Lorimer
Date
:
01 May 13 (Deposition) - 17 Jul 13 (Release) - 13 Nov 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.72
Chains
:
Asym. Unit : A,B,C,D,E,F,G
Biol. Unit 1: A,B,C,D,E,F,G (1x)
Keywords
:
Relaxed Allosteric State, Asymmetrical, Tetradecamer, Homoligomer, Chaperonin, Atpase, Misfolded Protein Binding, Atp/Adp Binding, Groes Binding, Chaperone
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
X. Fei, D. Yang, N. Laronde-Leblanc, G. H. Lorimer
Crystal Structure Of A Groel-Adp Complex In The Relaxed Allosteric State At 2. 7 A Resolution.
Proc. Natl. Acad. Sci. Usa V. 110 E2958 2013
[
close entry info
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Hetero Components
(5, 53)
Info
All Hetero Components
1a: ADENOSINE-5'-DIPHOSPHATE (ADPa)
1b: ADENOSINE-5'-DIPHOSPHATE (ADPb)
1c: ADENOSINE-5'-DIPHOSPHATE (ADPc)
1d: ADENOSINE-5'-DIPHOSPHATE (ADPd)
1e: ADENOSINE-5'-DIPHOSPHATE (ADPe)
1f: ADENOSINE-5'-DIPHOSPHATE (ADPf)
1g: ADENOSINE-5'-DIPHOSPHATE (ADPg)
2a: CALCIUM ION (CAa)
2b: CALCIUM ION (CAb)
2c: CALCIUM ION (CAc)
2d: CALCIUM ION (CAd)
2e: CALCIUM ION (CAe)
2f: CALCIUM ION (CAf)
2g: CALCIUM ION (CAg)
2h: CALCIUM ION (CAh)
2i: CALCIUM ION (CAi)
2j: CALCIUM ION (CAj)
2k: CALCIUM ION (CAk)
3a: POTASSIUM ION (Ka)
3b: POTASSIUM ION (Kb)
3c: POTASSIUM ION (Kc)
3d: POTASSIUM ION (Kd)
3e: POTASSIUM ION (Ke)
3f: POTASSIUM ION (Kf)
3g: POTASSIUM ION (Kg)
3h: POTASSIUM ION (Kh)
3i: POTASSIUM ION (Ki)
4a: MAGNESIUM ION (MGa)
4b: MAGNESIUM ION (MGb)
4c: MAGNESIUM ION (MGc)
4d: MAGNESIUM ION (MGd)
4e: MAGNESIUM ION (MGe)
4f: MAGNESIUM ION (MGf)
4g: MAGNESIUM ION (MGg)
5a: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDa)
5b: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDb)
5c: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDc)
5d: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDd)
5e: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDe)
5f: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDf)
5g: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDg)
5h: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDh)
5i: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDi)
5j: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDj)
5k: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDk)
5l: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDl)
5m: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDm)
5n: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDn)
5o: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDo)
5p: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDp)
5q: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDq)
5r: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDr)
5s: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDs)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ADP
7
Ligand/Ion
ADENOSINE-5'-DIPHOSPHATE
2
CA
11
Ligand/Ion
CALCIUM ION
3
K
9
Ligand/Ion
POTASSIUM ION
4
MG
7
Ligand/Ion
MAGNESIUM ION
5
MPD
19
Ligand/Ion
(4S)-2-METHYL-2,4-PENTANEDIOL
[
close Hetero Component info
]
Sites
(51, 51)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
34: DC7 (SOFTWARE)
35: DC8 (SOFTWARE)
36: DC9 (SOFTWARE)
37: EC1 (SOFTWARE)
38: EC2 (SOFTWARE)
39: EC3 (SOFTWARE)
40: EC4 (SOFTWARE)
41: EC5 (SOFTWARE)
42: EC6 (SOFTWARE)
43: EC7 (SOFTWARE)
44: EC8 (SOFTWARE)
45: EC9 (SOFTWARE)
46: FC1 (SOFTWARE)
47: FC2 (SOFTWARE)
48: FC3 (SOFTWARE)
49: FC4 (SOFTWARE)
50: FC5 (SOFTWARE)
51: FC6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
THR A:30 , LEU A:31 , GLY A:32 , ASP A:87 , GLY A:88 , THR A:89 , THR A:90 , THR A:91 , GLY A:414 , GLY A:415 , TYR A:478 , ASN A:479 , ALA A:480 , ILE A:493 , ASP A:495 , MG A:602 , K A:603 , HOH A:710 , HOH A:711 , HOH A:716 , HOH A:728 , HOH A:750 , HOH A:768
BINDING SITE FOR RESIDUE ADP A 601
02
AC2
SOFTWARE
ASP A:87 , ADP A:601 , HOH A:710 , HOH A:716 , HOH A:750
BINDING SITE FOR RESIDUE MG A 602
03
AC3
SOFTWARE
THR A:30 , LYS A:51 , ADP A:601 , HOH A:720 , HOH A:742 , HOH A:768 , HOH A:770
BINDING SITE FOR RESIDUE K A 603
04
AC4
SOFTWARE
GLU A:191 , GLN A:343 , ALA A:373 , HOH A:778
BINDING SITE FOR RESIDUE MPD A 604
05
AC5
SOFTWARE
ASN A:10 , VAL A:14 , LEU A:17 , LEU A:104 , ALA A:108
BINDING SITE FOR RESIDUE MPD A 605
06
AC6
SOFTWARE
GLU A:518 , LEU G:456 , ASN G:457
BINDING SITE FOR RESIDUE MPD A 606
07
AC7
SOFTWARE
GLN A:505 , HOH A:789
BINDING SITE FOR RESIDUE MPD A 607
08
AC8
SOFTWARE
ARG A:36 , GLN A:453 , LEU A:456 , ASN A:457 , GLU B:518
BINDING SITE FOR RESIDUE MPD A 608
09
AC9
SOFTWARE
ALA A:84 , ALA A:85 , GLY A:86 , HIS A:401 , ARG A:404 , GLU A:408 , LYS A:498
BINDING SITE FOR RESIDUE MPD A 609
10
BC1
SOFTWARE
LYS A:42 , SER A:43 , HOH B:750 , HOH B:756
BINDING SITE FOR RESIDUE CA A 610
11
BC2
SOFTWARE
ARG A:445
BINDING SITE FOR RESIDUE CA A 611
12
BC3
SOFTWARE
THR B:30 , LEU B:31 , GLY B:32 , PRO B:33 , ASP B:87 , GLY B:88 , THR B:89 , THR B:90 , THR B:91 , GLY B:414 , GLY B:415 , TYR B:478 , ASN B:479 , ALA B:480 , ALA B:481 , ILE B:493 , ASP B:495 , MG B:602 , K B:603 , HOH B:711 , HOH B:733 , HOH B:753 , HOH B:758 , HOH B:761
BINDING SITE FOR RESIDUE ADP B 601
13
BC4
SOFTWARE
ASP B:87 , ADP B:601 , HOH B:753 , HOH B:757 , HOH B:758
BINDING SITE FOR RESIDUE MG B 602
14
BC5
SOFTWARE
THR B:30 , LYS B:51 , ADP B:601 , HOH B:782 , HOH B:783 , HOH B:784
BINDING SITE FOR RESIDUE K B 603
15
BC6
SOFTWARE
VAL B:14 , LEU B:104 , LYS B:105 , ALA B:108 , HOH B:776
BINDING SITE FOR RESIDUE MPD B 604
16
BC7
SOFTWARE
ARG B:36 , LEU B:456 , ASN B:457 , HOH B:787 , GLU C:518
BINDING SITE FOR RESIDUE MPD B 605
17
BC8
SOFTWARE
GLU B:102 , ARG B:445
BINDING SITE FOR RESIDUE MPD B 607
18
BC9
SOFTWARE
ALA B:83 , ALA B:84 , GLY B:86 , HIS B:401 , GLU B:408 , LYS B:498
BINDING SITE FOR RESIDUE MPD B 608
19
CC1
SOFTWARE
GLU B:460 , HOH B:778 , HOH B:790 , HOH C:771
BINDING SITE FOR RESIDUE CA B 609
20
CC2
SOFTWARE
THR C:30 , LEU C:31 , GLY C:32 , PRO C:33 , ASP C:87 , GLY C:88 , THR C:89 , THR C:90 , THR C:91 , GLY C:414 , GLY C:415 , TYR C:478 , ASN C:479 , ALA C:480 , ALA C:481 , ILE C:493 , ASP C:495 , MG C:602 , K C:603 , HOH C:721 , HOH C:722 , HOH C:736 , HOH C:737 , HOH C:743 , HOH C:766 , HOH C:781
BINDING SITE FOR RESIDUE ADP C 601
21
CC3
SOFTWARE
ASP C:87 , ADP C:601 , HOH C:736 , HOH C:741 , HOH C:749 , HOH C:781
BINDING SITE FOR RESIDUE MG C 602
22
CC4
SOFTWARE
THR C:30 , GLY C:32 , LYS C:51 , ADP C:601 , HOH C:721 , HOH C:766
BINDING SITE FOR RESIDUE K C 603
23
CC5
SOFTWARE
VAL C:14 , LEU C:104 , ALA C:108 , HOH C:775
BINDING SITE FOR RESIDUE MPD C 604
24
CC6
SOFTWARE
THR D:30 , LEU D:31 , GLY D:32 , PRO D:33 , ASP D:87 , GLY D:88 , THR D:89 , THR D:90 , THR D:91 , ILE D:150 , GLY D:414 , GLY D:415 , TYR D:478 , ASN D:479 , ALA D:480 , ALA D:481 , ILE D:493 , ASP D:495 , MG D:602 , K D:603 , HOH D:709 , HOH D:738 , HOH D:756 , HOH D:757 , HOH D:766 , HOH D:784
BINDING SITE FOR RESIDUE ADP D 601
25
CC7
SOFTWARE
ASP D:87 , ADP D:601 , HOH D:709 , HOH D:738 , HOH D:756
BINDING SITE FOR RESIDUE MG D 602
26
CC8
SOFTWARE
THR D:30 , LYS D:51 , ASN D:153 , ADP D:601 , HOH D:766 , HOH D:767 , HOH D:768 , HOH D:783
BINDING SITE FOR RESIDUE K D 603
27
CC9
SOFTWARE
ASN D:10 , VAL D:14 , LEU D:17 , LEU D:104 , LYS D:105 , HOH D:770
BINDING SITE FOR RESIDUE MPD D 604
28
DC1
SOFTWARE
ILE D:175 , THR D:176
BINDING SITE FOR RESIDUE MPD D 605
29
DC2
SOFTWARE
ASP D:25
BINDING SITE FOR RESIDUE MPD D 606
30
DC3
SOFTWARE
HOH C:742 , HOH C:756 , HOH C:774 , HOH C:784 , HOH D:713
BINDING SITE FOR RESIDUE CA D 607
31
DC4
SOFTWARE
THR E:30 , LEU E:31 , GLY E:32 , PRO E:33 , ASP E:87 , GLY E:88 , THR E:89 , THR E:90 , THR E:91 , GLY E:414 , GLY E:415 , TYR E:478 , ASN E:479 , ALA E:480 , ALA E:481 , ILE E:493 , ASP E:495 , MG E:602 , K E:603 , HOH E:714 , HOH E:720 , HOH E:731 , HOH E:737 , HOH E:738 , HOH E:747
BINDING SITE FOR RESIDUE ADP E 601
32
DC5
SOFTWARE
ASP E:87 , ADP E:601 , HOH E:731 , HOH E:737 , HOH E:738
BINDING SITE FOR RESIDUE MG E 602
33
DC6
SOFTWARE
THR E:30 , GLY E:32 , ADP E:601 , HOH E:712 , HOH E:713 , HOH E:714
BINDING SITE FOR RESIDUE K E 603
34
DC7
SOFTWARE
GLU E:102 , ARG E:445
BINDING SITE FOR RESIDUE MPD E 604
35
DC8
SOFTWARE
HOH D:778 , LYS E:65 , HOH E:735
BINDING SITE FOR RESIDUE CA E 605
36
DC9
SOFTWARE
SER E:43 , HOH E:727 , HOH E:761
BINDING SITE FOR RESIDUE CA E 606
37
EC1
SOFTWARE
HOH E:756
BINDING SITE FOR RESIDUE CA E 607
38
EC2
SOFTWARE
THR F:30 , LEU F:31 , GLY F:32 , PRO F:33 , ASP F:87 , GLY F:88 , THR F:89 , THR F:90 , THR F:91 , ILE F:150 , ASN F:153 , GLY F:414 , GLY F:415 , TYR F:478 , ASN F:479 , ALA F:480 , ALA F:481 , ILE F:493 , ASP F:495 , MG F:602 , K F:603 , HOH F:706 , HOH F:707 , HOH F:723 , HOH F:737 , HOH F:754
BINDING SITE FOR RESIDUE ADP F 601
39
EC3
SOFTWARE
ASP F:87 , ADP F:601 , HOH F:706 , HOH F:707 , HOH F:723
BINDING SITE FOR RESIDUE MG F 602
40
EC4
SOFTWARE
THR F:30 , LYS F:51 , ADP F:601 , HOH F:743 , HOH F:744 , HOH F:745
BINDING SITE FOR RESIDUE K F 603
41
EC5
SOFTWARE
THR F:176 , VAL F:324 , THR F:331
BINDING SITE FOR RESIDUE MPD F 604
42
EC6
SOFTWARE
GLU F:460 , GLU F:483 , HOH F:759
BINDING SITE FOR RESIDUE K F 605
43
EC7
SOFTWARE
THR G:30 , LEU G:31 , GLY G:32 , PRO G:33 , ASP G:87 , GLY G:88 , THR G:89 , THR G:90 , THR G:91 , GLY G:414 , GLY G:415 , TYR G:478 , ASN G:479 , ALA G:480 , ALA G:481 , ILE G:493 , ASP G:495 , MG G:602 , K G:603 , HOH G:706 , HOH G:712 , HOH G:729 , HOH G:733 , HOH G:761 , HOH G:762 , HOH G:779
BINDING SITE FOR RESIDUE ADP G 601
44
EC8
SOFTWARE
ASP G:87 , ADP G:601 , HOH G:706 , HOH G:729 , HOH G:733
BINDING SITE FOR RESIDUE MG G 602
45
EC9
SOFTWARE
THR G:30 , LYS G:51 , ADP G:601 , HOH G:762 , HOH G:763 , HOH G:765 , HOH G:766
BINDING SITE FOR RESIDUE K G 603
46
FC1
SOFTWARE
LEU G:17 , LEU G:104 , LYS G:105 , ALA G:108 , HOH G:736 , HOH G:748
BINDING SITE FOR RESIDUE MPD G 604
47
FC2
SOFTWARE
TYR G:506
BINDING SITE FOR RESIDUE MPD G 605
48
FC3
SOFTWARE
HOH A:714 , SER G:43
BINDING SITE FOR RESIDUE CA G 606
49
FC4
SOFTWARE
ARG G:445
BINDING SITE FOR RESIDUE CA G 607
50
FC5
SOFTWARE
GLU G:460 , GLU G:483
BINDING SITE FOR RESIDUE K G 608
51
FC6
SOFTWARE
PRO A:113 , HOH A:734 , ARG G:36 , HOH G:725
BINDING SITE FOR RESIDUE CA G 609
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
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Exons
(0, 0)
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SCOP Domains
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CATH Domains
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Pfam Domains
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