PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
No precomputed SNP/Variant structure found.
Calculating the structure may take several minutes.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
4KHZ
Asym. Unit
Info
Asym.Unit (642 KB)
Biol.Unit 1 (631 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
CRYSTAL STRUCTURE OF THE MALTOSE-BINDING PROTEIN/MALTOSE TRANSPORTER COMPLEX IN AN PRE-TRANSLOCATION CONFORMATION BOUND TO MALTOHEPTAOSE
Authors
:
M. L. Oldham, S. Chen, J. Chen
Date
:
01 May 13 (Deposition) - 23 Oct 13 (Release) - 27 Nov 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.90
Chains
:
Asym. Unit : A,B,E,F,G
Biol. Unit 1: A,B,E,F,G (1x)
Keywords
:
Abc Transporter, Atpase Maltodextrin Transporter, Atp Binding Maltodextrin Binding, Inner Membrane, Transport Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. L. Oldham, S. Chen, J. Chen
Structural Basis For Substrate Specificity In The Escherichia Coli Maltose Transport System.
Proc. Natl. Acad. Sci. Usa V. 110 18132 2013
[
close entry info
]
Hetero Components
(2, 8)
Info
All Hetero Components
1a: ALPHA-D-GLUCOSE (GLCa)
1b: ALPHA-D-GLUCOSE (GLCb)
1c: ALPHA-D-GLUCOSE (GLCc)
1d: ALPHA-D-GLUCOSE (GLCd)
1e: ALPHA-D-GLUCOSE (GLCe)
1f: ALPHA-D-GLUCOSE (GLCf)
1g: ALPHA-D-GLUCOSE (GLCg)
2a: (1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPY... (PGVa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GLC
7
Ligand/Ion
ALPHA-D-GLUCOSE
2
PGV
1
Ligand/Ion
(1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE
[
close Hetero Component info
]
Sites
(3, 3)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ALA F:297 , CYS F:304 , LEU F:305 , TRP F:308 , PRO F:410 , ASN F:413 , ARG G:12 , THR G:16 , PHE G:23
BINDING SITE FOR RESIDUE PGV F 604
2
AC2
SOFTWARE
ASN E:12 , ASP E:14 , LYS E:15 , GLU E:44 , GLU E:45 , TRP E:62 , ALA E:63 , ASP E:65 , ARG E:66 , GLU E:111 , GLU E:153 , PRO E:154 , TYR E:155 , PHE E:156 , TRP E:340 , TYR E:341 , ARG E:344 , HOH E:609 , GLN G:256
BINDING SITE FOR CHAIN E OF POLYSACCHARIDE RESIDUES 501 TO 504
3
AC3
SOFTWARE
TYR F:325 , SER F:329 , ASN F:376 , LEU F:379 , GLY F:380 , TYR F:383 , SER F:433 , PHE F:436 , ASN F:437 , ASN F:440
BINDING SITE FOR CHAIN F OF POLYSACCHARIDE RESIDUES 601 TO 603
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
Select:
Label:
End label:
Sorry, no Info available
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(6, 8)
Info
All SCOP Domains
1a: SCOP_d4khza2 (A:236-371)
1b: SCOP_d4khzb2 (B:236-371)
2a: SCOP_d4khza1 (A:2-235)
2b: SCOP_d4khzb1 (B:2-235)
3a: SCOP_d4khze_ (E:)
4a: SCOP_d4khzf2 (F:261-505)
5a: SCOP_d4khzg_ (G:)
6a: SCOP_d4khzf1 (F:18-260)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
OB-fold
(1179)
Superfamily
:
MOP-like
(40)
Family
:
ABC-transporter additional domain
(24)
Protein domain
:
Maltose transport protein MalK, C-terminal domain
(16)
Escherichia coli [TaxId: 562]
(15)
1a
d4khza2
A:236-371
1b
d4khzb2
B:236-371
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Superfamily
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Family
:
ABC transporter ATPase domain-like
(94)
Protein domain
:
Maltose transport protein MalK, N-terminal domain
(16)
Escherichia coli [TaxId: 562]
(15)
2a
d4khza1
A:2-235
2b
d4khzb1
B:2-235
Fold
:
Periplasmic binding protein-like II
(813)
Superfamily
:
Periplasmic binding protein-like II
(813)
Family
:
Phosphate binding protein-like
(463)
Protein domain
:
D-maltodextrin-binding protein, MBP
(70)
Escherichia coli K-12 [TaxId: 83333]
(5)
3a
d4khze_
E:
Class
:
Membrane and cell surface proteins and peptides
(2046)
Fold
:
MetI-like
(24)
Superfamily
:
MetI-like
(24)
Family
:
MetI-like
(24)
Protein domain
:
Maltose transport system permease protein MalF
(10)
Escherichia coli [TaxId: 562]
(10)
4a
d4khzf2
F:261-505
Protein domain
:
Maltose transport system permease protein MalG
(3)
Escherichia coli [TaxId: 562]
(3)
5a
d4khzg_
G:
Class
:
Multi-domain proteins (alpha and beta)
(2421)
Fold
:
MalF N-terminal region-like
(10)
Superfamily
:
MalF N-terminal region-like
(10)
Family
:
MalF N-terminal region-like
(10)
Protein domain
:
Maltose transport system permease protein MalF
(10)
Escherichia coli [TaxId: 562]
(10)
6a
d4khzf1
F:18-260
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Chain E
Chain F
Chain G
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (642 KB)
Header - Asym.Unit
Biol.Unit 1 (631 KB)
Header - Biol.Unit 1
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
4KHZ
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help
