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Biol.Unit 1, α-C (1.0 MB)
Biol.Unit 1 (1.0 MB)
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(1)
Title
:
STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT IN COMPLEX WITH DE-6-MSA-PACTAMYCIN
Authors
:
D. S. Tourigny, I. S. Fernandez, A. C. Kelley, V. Ramakrishnan
Date
:
01 May 13 (Deposition) - 05 Jun 13 (Release) - 30 Oct 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.10
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,X
Biol. Unit 1: A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,X (1x)
Keywords
:
Pactamycin, 30S, Mrna, E Site, Trna, Ribosome, Translation, Antibiotic, Ribosome-Antibiotic Complex, De-6-Msa-Pactamycin And Pactamycin Analog
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
D. S. Tourigny, I. S. Fernandez, A. C. Kelley, R. R. Vakiti, A. K. Chattopadhyay, S. Dorich, S. Hanessian, V. Ramakrishnan
Crystal Structure Of A Bioactive Pactamycin Analog Bound To The 30S Ribosomal Subunit.
J. Mol. Biol. V. 425 3907 2013
[
close entry info
]
Hetero Components
(3, 111)
Info
All Hetero Components
1a: MAGNESIUM ION (MGa)
1aa: MAGNESIUM ION (MGaa)
1ab: MAGNESIUM ION (MGab)
1ac: MAGNESIUM ION (MGac)
1ad: MAGNESIUM ION (MGad)
1ae: MAGNESIUM ION (MGae)
1af: MAGNESIUM ION (MGaf)
1ag: MAGNESIUM ION (MGag)
1ah: MAGNESIUM ION (MGah)
1ai: MAGNESIUM ION (MGai)
1aj: MAGNESIUM ION (MGaj)
1ak: MAGNESIUM ION (MGak)
1al: MAGNESIUM ION (MGal)
1am: MAGNESIUM ION (MGam)
1an: MAGNESIUM ION (MGan)
1ao: MAGNESIUM ION (MGao)
1ap: MAGNESIUM ION (MGap)
1aq: MAGNESIUM ION (MGaq)
1ar: MAGNESIUM ION (MGar)
1as: MAGNESIUM ION (MGas)
1at: MAGNESIUM ION (MGat)
1au: MAGNESIUM ION (MGau)
1av: MAGNESIUM ION (MGav)
1aw: MAGNESIUM ION (MGaw)
1ax: MAGNESIUM ION (MGax)
1ay: MAGNESIUM ION (MGay)
1az: MAGNESIUM ION (MGaz)
1b: MAGNESIUM ION (MGb)
1ba: MAGNESIUM ION (MGba)
1bb: MAGNESIUM ION (MGbb)
1bc: MAGNESIUM ION (MGbc)
1bd: MAGNESIUM ION (MGbd)
1be: MAGNESIUM ION (MGbe)
1bf: MAGNESIUM ION (MGbf)
1bg: MAGNESIUM ION (MGbg)
1bh: MAGNESIUM ION (MGbh)
1bi: MAGNESIUM ION (MGbi)
1bj: MAGNESIUM ION (MGbj)
1bk: MAGNESIUM ION (MGbk)
1bl: MAGNESIUM ION (MGbl)
1bm: MAGNESIUM ION (MGbm)
1bn: MAGNESIUM ION (MGbn)
1bo: MAGNESIUM ION (MGbo)
1bp: MAGNESIUM ION (MGbp)
1bq: MAGNESIUM ION (MGbq)
1br: MAGNESIUM ION (MGbr)
1bs: MAGNESIUM ION (MGbs)
1bt: MAGNESIUM ION (MGbt)
1bu: MAGNESIUM ION (MGbu)
1bv: MAGNESIUM ION (MGbv)
1bw: MAGNESIUM ION (MGbw)
1bx: MAGNESIUM ION (MGbx)
1by: MAGNESIUM ION (MGby)
1bz: MAGNESIUM ION (MGbz)
1c: MAGNESIUM ION (MGc)
1ca: MAGNESIUM ION (MGca)
1cb: MAGNESIUM ION (MGcb)
1cc: MAGNESIUM ION (MGcc)
1cd: MAGNESIUM ION (MGcd)
1ce: MAGNESIUM ION (MGce)
1cf: MAGNESIUM ION (MGcf)
1cg: MAGNESIUM ION (MGcg)
1ch: MAGNESIUM ION (MGch)
1ci: MAGNESIUM ION (MGci)
1cj: MAGNESIUM ION (MGcj)
1ck: MAGNESIUM ION (MGck)
1cl: MAGNESIUM ION (MGcl)
1cm: MAGNESIUM ION (MGcm)
1cn: MAGNESIUM ION (MGcn)
1co: MAGNESIUM ION (MGco)
1cp: MAGNESIUM ION (MGcp)
1cq: MAGNESIUM ION (MGcq)
1cr: MAGNESIUM ION (MGcr)
1cs: MAGNESIUM ION (MGcs)
1ct: MAGNESIUM ION (MGct)
1cu: MAGNESIUM ION (MGcu)
1cv: MAGNESIUM ION (MGcv)
1cw: MAGNESIUM ION (MGcw)
1cx: MAGNESIUM ION (MGcx)
1cy: MAGNESIUM ION (MGcy)
1d: MAGNESIUM ION (MGd)
1e: MAGNESIUM ION (MGe)
1f: MAGNESIUM ION (MGf)
1g: MAGNESIUM ION (MGg)
1h: MAGNESIUM ION (MGh)
1i: MAGNESIUM ION (MGi)
1j: MAGNESIUM ION (MGj)
1k: MAGNESIUM ION (MGk)
1l: MAGNESIUM ION (MGl)
1m: MAGNESIUM ION (MGm)
1n: MAGNESIUM ION (MGn)
1o: MAGNESIUM ION (MGo)
1p: MAGNESIUM ION (MGp)
1q: MAGNESIUM ION (MGq)
1r: MAGNESIUM ION (MGr)
1s: MAGNESIUM ION (MGs)
1t: MAGNESIUM ION (MGt)
1u: MAGNESIUM ION (MGu)
1v: MAGNESIUM ION (MGv)
1w: MAGNESIUM ION (MGw)
1x: MAGNESIUM ION (MGx)
1y: MAGNESIUM ION (MGy)
1z: MAGNESIUM ION (MGz)
2a: PAROMOMYCIN (PARa)
2b: PAROMOMYCIN (PARb)
2c: PAROMOMYCIN (PARc)
2d: PAROMOMYCIN (PARd)
2e: PAROMOMYCIN (PARe)
2f: PAROMOMYCIN (PARf)
2g: PAROMOMYCIN (PARg)
3a: DE-6-MSA-PACTAMYCIN (PCYa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
MG
103
Ligand/Ion
MAGNESIUM ION
2
PAR
7
Ligand/Ion
PAROMOMYCIN
3
PCY
1
Ligand/Ion
DE-6-MSA-PACTAMYCIN
[
close Hetero Component info
]
Sites
(96, 96)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
34: DC7 (SOFTWARE)
35: DC8 (SOFTWARE)
36: DC9 (SOFTWARE)
37: EC1 (SOFTWARE)
38: EC2 (SOFTWARE)
39: EC3 (SOFTWARE)
40: EC4 (SOFTWARE)
41: EC5 (SOFTWARE)
42: EC6 (SOFTWARE)
43: EC7 (SOFTWARE)
44: EC8 (SOFTWARE)
45: EC9 (SOFTWARE)
46: FC1 (SOFTWARE)
47: FC2 (SOFTWARE)
48: FC3 (SOFTWARE)
49: FC4 (SOFTWARE)
50: FC5 (SOFTWARE)
51: FC6 (SOFTWARE)
52: FC7 (SOFTWARE)
53: FC8 (SOFTWARE)
54: FC9 (SOFTWARE)
55: GC1 (SOFTWARE)
56: GC2 (SOFTWARE)
57: GC3 (SOFTWARE)
58: GC4 (SOFTWARE)
59: GC5 (SOFTWARE)
60: GC6 (SOFTWARE)
61: GC7 (SOFTWARE)
62: GC8 (SOFTWARE)
63: GC9 (SOFTWARE)
64: HC1 (SOFTWARE)
65: HC2 (SOFTWARE)
66: HC3 (SOFTWARE)
67: HC4 (SOFTWARE)
68: HC5 (SOFTWARE)
69: HC6 (SOFTWARE)
70: HC7 (SOFTWARE)
71: HC8 (SOFTWARE)
72: HC9 (SOFTWARE)
73: IC1 (SOFTWARE)
74: IC2 (SOFTWARE)
75: IC3 (SOFTWARE)
76: IC4 (SOFTWARE)
77: IC5 (SOFTWARE)
78: IC6 (SOFTWARE)
79: IC7 (SOFTWARE)
80: IC8 (SOFTWARE)
81: IC9 (SOFTWARE)
82: JC1 (SOFTWARE)
83: JC2 (SOFTWARE)
84: JC3 (SOFTWARE)
85: JC4 (SOFTWARE)
86: JC5 (SOFTWARE)
87: JC6 (SOFTWARE)
88: JC7 (SOFTWARE)
89: JC8 (SOFTWARE)
90: JC9 (SOFTWARE)
91: KC1 (SOFTWARE)
92: KC2 (SOFTWARE)
93: KC3 (SOFTWARE)
94: KC4 (SOFTWARE)
95: KC5 (SOFTWARE)
96: KC6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
G A:1388 , U A:1389 , C A:1390 , A A:1391 , C A:1468 , G A:1469 , A A:1470 , A A:1471 , G A:1472 , U A:1473
BINDING SITE FOR RESIDUE PAR A 1601
02
AC2
SOFTWARE
G A:551 , G A:552 , C A:553 , G A:554 , G A:559 , G A:805 , G A:852 , C A:853
BINDING SITE FOR RESIDUE PAR A 1602
03
AC3
SOFTWARE
A A:113 , A A:114 , C A:115 , G A:116 , C A:117 , G A:232 , C A:233 , G A:234 , U A:235 , C A:236 , C A:237 , G A:277 , LYS Q:40
BINDING SITE FOR RESIDUE PAR A 1603
04
AC4
SOFTWARE
G A:594 , A A:595 , C A:596 , C A:597 , A A:606 , C A:607 , C A:608 , G A:609 , U A:610 , GLU D:81 , LYS D:84
BINDING SITE FOR RESIDUE PAR A 1604
05
AC5
SOFTWARE
U A:653 , G A:654 , U A:656 , G A:698 , A A:699 , A A:700 , C A:701
BINDING SITE FOR RESIDUE PAR A 1605
06
AC6
SOFTWARE
G A:1044 , U A:1045 , U A:1048 , C A:1171 , G A:1172 , TYR I:114 , SER J:59
BINDING SITE FOR RESIDUE PAR A 1606
07
AC7
SOFTWARE
G A:32 , C A:48 , C A:49 , A A:51 , A A:52 , G A:53 , G A:107 , U A:108 , G A:109 , A A:349 , C A:351 , A A:352 , U A:354 , U A:355 , A A:356 , G A:357 , C A:362
BINDING SITE FOR RESIDUE PAR A 1607
08
AC8
SOFTWARE
G A:677 , A A:678 , A A:771 , U A:772 , C A:779 , C A:780 , GLY G:82 , C X:1 , U X:2
BINDING SITE FOR RESIDUE PCY A 1608
09
AC9
SOFTWARE
G A:922 , G A:923
BINDING SITE FOR RESIDUE MG A 1609
10
BC1
SOFTWARE
G A:1206
BINDING SITE FOR RESIDUE MG A 1610
11
BC2
SOFTWARE
G A:12 , U A:13 , G A:22 , G A:23 , C A:24
BINDING SITE FOR RESIDUE MG A 1611
12
BC3
SOFTWARE
G A:372
BINDING SITE FOR RESIDUE MG A 1612
13
BC4
SOFTWARE
C A:733 , G A:734
BINDING SITE FOR RESIDUE MG A 1613
14
BC5
SOFTWARE
A A:750 , C A:795
BINDING SITE FOR RESIDUE MG A 1614
15
BC6
SOFTWARE
A A:752
BINDING SITE FOR RESIDUE MG A 1615
16
BC7
SOFTWARE
G A:561 , C A:562
BINDING SITE FOR RESIDUE MG A 1617
17
BC8
SOFTWARE
G A:490 , A A:493 , A A:494
BINDING SITE FOR RESIDUE MG A 1619
18
BC9
SOFTWARE
U A:544 , C A:546
BINDING SITE FOR RESIDUE MG A 1620
19
CC1
SOFTWARE
A A:17
BINDING SITE FOR RESIDUE MG A 1621
20
CC2
SOFTWARE
G A:22
BINDING SITE FOR RESIDUE MG A 1622
21
CC3
SOFTWARE
G A:579 , C A:580 , G A:581 , U A:582
BINDING SITE FOR RESIDUE MG A 1623
22
CC4
SOFTWARE
G A:836 , G A:847
BINDING SITE FOR RESIDUE MG A 1624
23
CC5
SOFTWARE
A A:915
BINDING SITE FOR RESIDUE MG A 1625
24
CC6
SOFTWARE
G A:1353 , G A:1354
BINDING SITE FOR RESIDUE MG A 1626
25
CC7
SOFTWARE
G A:1062
BINDING SITE FOR RESIDUE MG A 1627
26
CC8
SOFTWARE
G A:571 , G A:572
BINDING SITE FOR RESIDUE MG A 1629
27
CC9
SOFTWARE
C A:635
BINDING SITE FOR RESIDUE MG A 1630
28
DC1
SOFTWARE
A A:942 , U A:1181
BINDING SITE FOR RESIDUE MG A 1631
29
DC2
SOFTWARE
C A:958 , U A:1201 , G A:1202
BINDING SITE FOR RESIDUE MG A 1632
30
DC3
SOFTWARE
C A:1037 , G A:1179
BINDING SITE FOR RESIDUE MG A 1634
31
DC4
SOFTWARE
C A:1037 , G A:1179 , G A:1180
BINDING SITE FOR RESIDUE MG A 1635
32
DC5
SOFTWARE
G A:295 , A A:296 , G A:542 , U A:544 , G A:550
BINDING SITE FOR RESIDUE MG A 1636
33
DC6
SOFTWARE
G A:320
BINDING SITE FOR RESIDUE MG A 1637
34
DC7
SOFTWARE
U A:555 , A A:556 , A A:557 , A A:558
BINDING SITE FOR RESIDUE MG A 1638
35
DC8
SOFTWARE
A A:1093 , C A:1171
BINDING SITE FOR RESIDUE MG A 1639
36
DC9
SOFTWARE
A A:1050 , G A:1051 , G A:1077 , G A:1370
BINDING SITE FOR RESIDUE MG A 1640
37
EC1
SOFTWARE
U A:1078 , C A:1079 , G A:1091
BINDING SITE FOR RESIDUE MG A 1641
38
EC2
SOFTWARE
G A:282
BINDING SITE FOR RESIDUE MG A 1642
39
EC3
SOFTWARE
G A:1503
BINDING SITE FOR RESIDUE MG A 1643
40
EC4
SOFTWARE
U A:1488 , G A:1489 , U A:1490 , U A:1500 , G A:1501 , C A:1502
BINDING SITE FOR RESIDUE MG A 1644
41
EC5
SOFTWARE
A A:1477 , A A:1478 , G A:1486 , G A:1499
BINDING SITE FOR RESIDUE MG A 1645
42
EC6
SOFTWARE
A A:1477 , A A:1478 , G A:1482 , G A:1483
BINDING SITE FOR RESIDUE MG A 1646
43
EC7
SOFTWARE
A A:1478 , G A:1482 , G A:1483 , A A:1485 , G A:1486
BINDING SITE FOR RESIDUE MG A 1647
44
EC8
SOFTWARE
A A:202
BINDING SITE FOR RESIDUE MG A 1648
45
EC9
SOFTWARE
U A:177 , G A:178
BINDING SITE FOR RESIDUE MG A 1649
46
FC1
SOFTWARE
A A:110 , G A:111 , G A:285
BINDING SITE FOR RESIDUE MG A 1650
47
FC2
SOFTWARE
C A:348
BINDING SITE FOR RESIDUE MG A 1651
48
FC3
SOFTWARE
C A:368 , U A:371 , G A:372 , U A:383
BINDING SITE FOR RESIDUE MG A 1652
49
FC4
SOFTWARE
A A:766 , A A:778
BINDING SITE FOR RESIDUE MG A 1654
50
FC5
SOFTWARE
G A:1036 , G A:1041 , C A:1042 , G A:1180 , U A:1181
BINDING SITE FOR RESIDUE MG A 1655
51
FC6
SOFTWARE
C A:1285 , G A:1286 , G A:1287 , ASP U:5
BINDING SITE FOR RESIDUE MG A 1656
52
FC7
SOFTWARE
A A:547 , C A:548 , U A:549 , G A:550 , G A:551
BINDING SITE FOR RESIDUE MG A 1657
53
FC8
SOFTWARE
G A:568 , G A:569 , U A:741
BINDING SITE FOR RESIDUE MG A 1659
54
FC9
SOFTWARE
A A:531 , G A:532
BINDING SITE FOR RESIDUE MG A 1660
55
GC1
SOFTWARE
G A:406
BINDING SITE FOR RESIDUE MG A 1662
56
GC2
SOFTWARE
C A:520
BINDING SITE FOR RESIDUE MG A 1663
57
GC3
SOFTWARE
C A:488 , G A:489
BINDING SITE FOR RESIDUE MG A 1664
58
GC4
SOFTWARE
C A:502 , G A:513 , PRO L:48 , ASN L:49
BINDING SITE FOR RESIDUE MG A 1665
59
GC5
SOFTWARE
C A:169 , C A:170
BINDING SITE FOR RESIDUE MG A 1666
60
GC6
SOFTWARE
G A:62 , U A:63 , G A:99 , C A:100
BINDING SITE FOR RESIDUE MG A 1667
61
GC7
SOFTWARE
G A:1439 , G A:1440
BINDING SITE FOR RESIDUE MG A 1670
62
GC8
SOFTWARE
U A:1476
BINDING SITE FOR RESIDUE MG A 1671
63
GC9
SOFTWARE
U A:14 , A A:893
BINDING SITE FOR RESIDUE MG A 1672
64
HC1
SOFTWARE
U A:1073 , U A:1074 , G A:1077 , U A:1078
BINDING SITE FOR RESIDUE MG A 1673
65
HC2
SOFTWARE
A A:1220 , A A:1281 , U A:1283 , C A:1317
BINDING SITE FOR RESIDUE MG A 1674
66
HC3
SOFTWARE
A A:592 , A A:593
BINDING SITE FOR RESIDUE MG A 1675
67
HC4
SOFTWARE
G A:565 , G A:742
BINDING SITE FOR RESIDUE MG A 1676
68
HC5
SOFTWARE
A A:95
BINDING SITE FOR RESIDUE MG A 1677
69
HC6
SOFTWARE
C A:324 , A A:325
BINDING SITE FOR RESIDUE MG A 1678
70
HC7
SOFTWARE
A A:311
BINDING SITE FOR RESIDUE MG A 1679
71
HC8
SOFTWARE
U A:500 , A A:517
BINDING SITE FOR RESIDUE MG A 1680
72
HC9
SOFTWARE
C A:950 , ASP J:58
BINDING SITE FOR RESIDUE MG A 1681
73
IC1
SOFTWARE
U A:899 , G A:900 , U A:1376
BINDING SITE FOR RESIDUE MG A 1682
74
IC2
SOFTWARE
C A:902 , G A:903 , G A:905 , U A:1373 , U A:1374
BINDING SITE FOR RESIDUE MG A 1683
75
IC3
SOFTWARE
G A:769 , G A:770
BINDING SITE FOR RESIDUE MG A 1685
76
IC4
SOFTWARE
G A:1393
BINDING SITE FOR RESIDUE MG A 1687
77
IC5
SOFTWARE
A A:1481
BINDING SITE FOR RESIDUE MG A 1688
78
IC6
SOFTWARE
U A:46 , G A:392
BINDING SITE FOR RESIDUE MG A 1689
79
IC7
SOFTWARE
G A:358
BINDING SITE FOR RESIDUE MG A 1690
80
IC8
SOFTWARE
G A:866
BINDING SITE FOR RESIDUE MG A 1691
81
IC9
SOFTWARE
G A:434
BINDING SITE FOR RESIDUE MG A 1692
82
JC1
SOFTWARE
A A:146
BINDING SITE FOR RESIDUE MG A 1696
83
JC2
SOFTWARE
C A:287 , U A:300 , G A:301
BINDING SITE FOR RESIDUE MG A 1697
84
JC3
SOFTWARE
G A:107
BINDING SITE FOR RESIDUE MG A 1698
85
JC4
SOFTWARE
C A:1086 , ARG B:96
BINDING SITE FOR RESIDUE MG A 1699
86
JC5
SOFTWARE
G A:675 , U A:676 , ASN K:26 , GLY K:52
BINDING SITE FOR RESIDUE MG A 1700
87
JC6
SOFTWARE
G A:1369
BINDING SITE FOR RESIDUE MG A 1701
88
JC7
SOFTWARE
U A:128 , U A:225 , G A:226
BINDING SITE FOR RESIDUE MG A 1702
89
JC8
SOFTWARE
C A:810 , U A:811 , ARG H:12 , THR H:24
BINDING SITE FOR RESIDUE MG A 1703
90
JC9
SOFTWARE
G A:141 , G A:142
BINDING SITE FOR RESIDUE MG A 1704
91
KC1
SOFTWARE
G A:634
BINDING SITE FOR RESIDUE MG A 1705
92
KC2
SOFTWARE
G A:693 , G A:694
BINDING SITE FOR RESIDUE MG A 1707
93
KC3
SOFTWARE
G A:422 , ARG D:13 , TYR D:38 , PRO D:39 , PRO D:40 , GLY D:41
BINDING SITE FOR RESIDUE MG D 301
94
KC4
SOFTWARE
GLU E:83
BINDING SITE FOR RESIDUE MG E 201
95
KC5
SOFTWARE
G A:784 , LYS K:122
BINDING SITE FOR RESIDUE MG K 201
96
KC6
SOFTWARE
A A:1209 , TYR S:80 , ARG S:81
BINDING SITE FOR RESIDUE MG S 101
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
Select:
Label:
End label:
Sorry, no Info available
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
Select:
Label:
Sorry, no Info available
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
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Atom Selection
(currently selected atoms:
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)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Chain C
Chain D
Chain E
Chain F
Chain G
Chain H
Chain I
Chain J
Chain K
Chain L
Chain M
Chain N
Chain O
Chain P
Chain Q
Chain R
Chain S
Chain T
Chain U
Chain X
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
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molecule
background
color...
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RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
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Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
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Asym.Unit (1.0 MB)
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Biol.Unit 1 (1.0 MB)
Header - Biol.Unit 1
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