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4KFE
Biol. Unit 2
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Asym.Unit (1.3 MB)
Biol.Unit 1 (447 KB)
Biol.Unit 2 (449 KB)
Biol.Unit 3 (448 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HANSENULA POLYMORPHA COPPER AMINE OXIDASE-1 REDUCED BY METHYLAMINE AT PH 7.0
Authors
:
B. J. Johnson, E. T. Yukl, V. J. Klema, C. M. Wilmot
Date
:
26 Apr 13 (Deposition) - 21 Aug 13 (Release) - 21 Aug 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.10
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Biol. Unit 3: E,F (1x)
Keywords
:
Amine Oxidase, Oxidoreductase, Peroxisome
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
B. J. Johnson, E. T. Yukl, V. J. Klema, J. P. Klinman, C. M. Wilmot
Structural Evidence For The Semiquinone In A Copper Amine Oxidase From Hansenula Polymorpha: Implications For The Catalytic Mechanism
J. Biol. Chem. 2013
[
close entry info
]
Hetero Components
(5, 22)
Info
All Hetero Components
1a: COPPER (II) ION (CUa)
1b: COPPER (II) ION (CUb)
1c: COPPER (II) ION (CUc)
1d: COPPER (II) ION (CUd)
1e: COPPER (II) ION (CUe)
1f: COPPER (II) ION (CUf)
2a: FORMYL GROUP (FORa)
2b: FORMYL GROUP (FORb)
2c: FORMYL GROUP (FORc)
3a: GLYCEROL (GOLa)
3aa: GLYCEROL (GOLaa)
3ab: GLYCEROL (GOLab)
3ac: GLYCEROL (GOLac)
3ad: GLYCEROL (GOLad)
3ae: GLYCEROL (GOLae)
3af: GLYCEROL (GOLaf)
3ag: GLYCEROL (GOLag)
3ah: GLYCEROL (GOLah)
3ai: GLYCEROL (GOLai)
3aj: GLYCEROL (GOLaj)
3ak: GLYCEROL (GOLak)
3al: GLYCEROL (GOLal)
3am: GLYCEROL (GOLam)
3an: GLYCEROL (GOLan)
3ao: GLYCEROL (GOLao)
3ap: GLYCEROL (GOLap)
3aq: GLYCEROL (GOLaq)
3ar: GLYCEROL (GOLar)
3as: GLYCEROL (GOLas)
3at: GLYCEROL (GOLat)
3au: GLYCEROL (GOLau)
3av: GLYCEROL (GOLav)
3aw: GLYCEROL (GOLaw)
3ax: GLYCEROL (GOLax)
3ay: GLYCEROL (GOLay)
3az: GLYCEROL (GOLaz)
3b: GLYCEROL (GOLb)
3c: GLYCEROL (GOLc)
3d: GLYCEROL (GOLd)
3e: GLYCEROL (GOLe)
3f: GLYCEROL (GOLf)
3g: GLYCEROL (GOLg)
3h: GLYCEROL (GOLh)
3i: GLYCEROL (GOLi)
3j: GLYCEROL (GOLj)
3k: GLYCEROL (GOLk)
3l: GLYCEROL (GOLl)
3m: GLYCEROL (GOLm)
3n: GLYCEROL (GOLn)
3o: GLYCEROL (GOLo)
3p: GLYCEROL (GOLp)
3q: GLYCEROL (GOLq)
3r: GLYCEROL (GOLr)
3s: GLYCEROL (GOLs)
3t: GLYCEROL (GOLt)
3u: GLYCEROL (GOLu)
3v: GLYCEROL (GOLv)
3w: GLYCEROL (GOLw)
3x: GLYCEROL (GOLx)
3y: GLYCEROL (GOLy)
3z: GLYCEROL (GOLz)
4a: HYDROGEN PEROXIDE (PEOa)
4b: HYDROGEN PEROXIDE (PEOb)
4c: HYDROGEN PEROXIDE (PEOc)
4d: HYDROGEN PEROXIDE (PEOd)
4e: HYDROGEN PEROXIDE (PEOe)
4f: HYDROGEN PEROXIDE (PEOf)
5a: PHOSPHATE ION (PO4a)
5b: PHOSPHATE ION (PO4b)
5c: PHOSPHATE ION (PO4c)
6a: 3-(4-HYDROXY-3-IMINO-6-OXO-CYCLOHE... (TYYa)
6b: 3-(4-HYDROXY-3-IMINO-6-OXO-CYCLOHE... (TYYb)
6c: 3-(4-HYDROXY-3-IMINO-6-OXO-CYCLOHE... (TYYc)
6d: 3-(4-HYDROXY-3-IMINO-6-OXO-CYCLOHE... (TYYd)
6e: 3-(4-HYDROXY-3-IMINO-6-OXO-CYCLOHE... (TYYe)
6f: 3-(4-HYDROXY-3-IMINO-6-OXO-CYCLOHE... (TYYf)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CU
-1
Ligand/Ion
COPPER (II) ION
2
FOR
1
Mod. Residue
FORMYL GROUP
3
GOL
16
Ligand/Ion
GLYCEROL
4
PEO
2
Ligand/Ion
HYDROGEN PEROXIDE
5
PO4
1
Ligand/Ion
PHOSPHATE ION
6
TYY
2
Mod. Amino Acid
3-(4-HYDROXY-3-IMINO-6-OXO-CYCLOHEXA-1,4-DIENYL)-ALANINE
[
close Hetero Component info
]
Sites
(24, 24)
Info
All Sites
01: CC6 (SOFTWARE)
02: CC7 (SOFTWARE)
03: DC2 (SOFTWARE)
04: DC3 (SOFTWARE)
05: DC4 (SOFTWARE)
06: DC5 (SOFTWARE)
07: DC6 (SOFTWARE)
08: DC8 (SOFTWARE)
09: DC9 (SOFTWARE)
10: EC1 (SOFTWARE)
11: EC2 (SOFTWARE)
12: EC3 (SOFTWARE)
13: EC4 (SOFTWARE)
14: EC5 (SOFTWARE)
15: EC6 (SOFTWARE)
16: EC7 (SOFTWARE)
17: EC8 (SOFTWARE)
18: EC9 (SOFTWARE)
19: FC1 (SOFTWARE)
20: FC2 (SOFTWARE)
21: FC3 (SOFTWARE)
22: FC4 (SOFTWARE)
23: FC5 (SOFTWARE)
24: FC6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
CC6
SOFTWARE
LEU B:558 , LYS B:561 , SER B:591 , GOL B:809 , HOH B:988 , HOH B:1394 , LYS C:561 , ASP C:593
BINDING SITE FOR RESIDUE GOL B 808
02
CC7
SOFTWARE
LYS B:561 , ASP B:593 , GOL B:808 , HOH B:988 , HOH B:1487 , TYR C:160 , LYS C:561 , SER C:591 , HOH C:1512
BINDING SITE FOR RESIDUE GOL B 809
03
DC2
SOFTWARE
PRO B:144 , GLU B:147 , TYR B:177 , HOH B:1146 , HOH D:1410
BINDING SITE FOR RESIDUE GOL B 813
04
DC3
SOFTWARE
HIS C:456 , HIS C:458 , HIS C:624 , PEO C:802 , HOH C:1426
BINDING SITE FOR RESIDUE CU C 801
05
DC4
SOFTWARE
TYY C:405 , HIS C:456 , HIS C:458 , HIS C:624 , MET C:634 , CU C:801 , HOH C:990 , HOH C:1426
BINDING SITE FOR RESIDUE PEO C 802
06
DC5
SOFTWARE
HIS C:23 , TYR C:64 , LYS C:68 , ASP C:280 , HOH C:964 , HOH C:1521
BINDING SITE FOR RESIDUE GOL C 803
07
DC6
SOFTWARE
LYS C:214 , VAL C:215 , ASP C:436 , HOH C:1116 , HOH C:1256
BINDING SITE FOR RESIDUE GOL C 804
08
DC8
SOFTWARE
LYS C:393 , VAL C:412 , ASP C:422 , HOH C:1033 , HOH C:1562
BINDING SITE FOR RESIDUE GOL C 806
09
DC9
SOFTWARE
TYR C:499 , PRO D:442
BINDING SITE FOR RESIDUE GOL C 807
10
EC1
SOFTWARE
HIS C:218 , LYS C:219
BINDING SITE FOR RESIDUE PO4 C 808
11
EC2
SOFTWARE
GLN B:66 , GLN B:70 , GLY B:72 , TYR C:534 , GLU C:651 , HOH C:942 , HOH C:1487 , LYS D:231
BINDING SITE FOR RESIDUE GOL C 809
12
EC3
SOFTWARE
ARG C:57 , TYR C:80 , ASN C:578 , TYR C:581 , ASP C:585 , HOH C:1146 , HOH C:1262 , HOH C:1363 , HOH C:1495
BINDING SITE FOR RESIDUE GOL C 810
13
EC4
SOFTWARE
TYY D:405 , LEU D:429 , HIS D:456 , HIS D:458 , HIS D:624 , MET D:634 , CU D:703 , HOH D:805
BINDING SITE FOR RESIDUE PEO D 701
14
EC5
SOFTWARE
TRP D:156 , ASP D:319 , TYR D:323 , TYY D:405
BINDING SITE FOR RESIDUE FOR D 702
15
EC6
SOFTWARE
HIS D:456 , HIS D:458 , HIS D:624 , PEO D:701 , HOH D:1351
BINDING SITE FOR RESIDUE CU D 703
16
EC7
SOFTWARE
GLY D:142 , PRO D:144 , GLU D:147 , TYR D:177 , LYS D:217 , HOH D:1127 , HOH D:1466
BINDING SITE FOR RESIDUE GOL D 704
17
EC8
SOFTWARE
LYS D:150
BINDING SITE FOR RESIDUE GOL D 705
18
EC9
SOFTWARE
TYR D:499
BINDING SITE FOR RESIDUE GOL D 706
19
FC1
SOFTWARE
LYS B:62 , ALA B:63 , GLN B:66 , PRO B:73 , HOH B:1007 , HOH B:1345 , HOH B:1581 , LYS D:231 , VAL D:232 , GLY D:233
BINDING SITE FOR RESIDUE GOL D 707
20
FC2
SOFTWARE
GLU D:368 , LYS D:393 , VAL D:412 , ASP D:422 , ARG D:424 , HOH D:998 , HOH D:1429
BINDING SITE FOR RESIDUE GOL D 708
21
FC3
SOFTWARE
HIS D:23 , TYR D:64 , LYS D:68 , LYS D:265 , ASP D:280 , HOH D:909
BINDING SITE FOR RESIDUE GOL D 709
22
FC4
SOFTWARE
TRP D:67 , LYS D:68
BINDING SITE FOR RESIDUE GOL D 710
23
FC5
SOFTWARE
LEU D:56 , ARG D:57 , TYR D:80 , LEU D:580 , HOH D:993 , HOH D:1089 , HOH D:1487
BINDING SITE FOR RESIDUE GOL D 711
24
FC6
SOFTWARE
PHE D:252 , LYS D:253 , MET D:254 , ILE D:342 , HIS D:343
BINDING SITE FOR RESIDUE GOL D 712
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(0, 0)
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(mutated residues are only available for the asymmetric unit)
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