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4KFD
Biol. Unit 3
Info
Asym.Unit (1.3 MB)
Biol.Unit 1 (446 KB)
Biol.Unit 2 (450 KB)
Biol.Unit 3 (449 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HANSENULA POLYMORPHA COPPER AMINE OXIDASE-1 REDUCED BY METHYLAMINE AT PH 6.0
Authors
:
B. J. Johnson, E. T. Yukl, V. J. Klema, C. M. Wilmot
Date
:
26 Apr 13 (Deposition) - 21 Aug 13 (Release) - 21 Aug 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.69
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Biol. Unit 3: E,F (1x)
Keywords
:
Amine Oxidase, Oxidoreductase, Peroxisome
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
B. J. Johnson, E. T. Yukl, V. J. Klema, J. P. Klinman, C. M. Wilmot
Structural Evidence For The Semiquinone In A Copper Amine Oxidase From Hansenula Polymorpha: Implications For The Catalytic Mechanism
J. Biol. Chem. 2013
[
close entry info
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Hetero Components
(4, 20)
Info
All Hetero Components
1a: COPPER (II) ION (CUa)
1b: COPPER (II) ION (CUb)
1c: COPPER (II) ION (CUc)
1d: COPPER (II) ION (CUd)
1e: COPPER (II) ION (CUe)
1f: COPPER (II) ION (CUf)
2a: GLYCEROL (GOLa)
2aa: GLYCEROL (GOLaa)
2ab: GLYCEROL (GOLab)
2ac: GLYCEROL (GOLac)
2ad: GLYCEROL (GOLad)
2ae: GLYCEROL (GOLae)
2af: GLYCEROL (GOLaf)
2ag: GLYCEROL (GOLag)
2ah: GLYCEROL (GOLah)
2ai: GLYCEROL (GOLai)
2aj: GLYCEROL (GOLaj)
2ak: GLYCEROL (GOLak)
2al: GLYCEROL (GOLal)
2am: GLYCEROL (GOLam)
2an: GLYCEROL (GOLan)
2ao: GLYCEROL (GOLao)
2ap: GLYCEROL (GOLap)
2aq: GLYCEROL (GOLaq)
2ar: GLYCEROL (GOLar)
2as: GLYCEROL (GOLas)
2at: GLYCEROL (GOLat)
2au: GLYCEROL (GOLau)
2av: GLYCEROL (GOLav)
2aw: GLYCEROL (GOLaw)
2ax: GLYCEROL (GOLax)
2ay: GLYCEROL (GOLay)
2az: GLYCEROL (GOLaz)
2b: GLYCEROL (GOLb)
2c: GLYCEROL (GOLc)
2d: GLYCEROL (GOLd)
2e: GLYCEROL (GOLe)
2f: GLYCEROL (GOLf)
2g: GLYCEROL (GOLg)
2h: GLYCEROL (GOLh)
2i: GLYCEROL (GOLi)
2j: GLYCEROL (GOLj)
2k: GLYCEROL (GOLk)
2l: GLYCEROL (GOLl)
2m: GLYCEROL (GOLm)
2n: GLYCEROL (GOLn)
2o: GLYCEROL (GOLo)
2p: GLYCEROL (GOLp)
2q: GLYCEROL (GOLq)
2r: GLYCEROL (GOLr)
2s: GLYCEROL (GOLs)
2t: GLYCEROL (GOLt)
2u: GLYCEROL (GOLu)
2v: GLYCEROL (GOLv)
2w: GLYCEROL (GOLw)
2x: GLYCEROL (GOLx)
2y: GLYCEROL (GOLy)
2z: GLYCEROL (GOLz)
3a: HYDROGEN PEROXIDE (PEOa)
3b: HYDROGEN PEROXIDE (PEOb)
3c: HYDROGEN PEROXIDE (PEOc)
3d: HYDROGEN PEROXIDE (PEOd)
3e: HYDROGEN PEROXIDE (PEOe)
3f: HYDROGEN PEROXIDE (PEOf)
4a: PHOSPHATE ION (PO4a)
4b: PHOSPHATE ION (PO4b)
4c: PHOSPHATE ION (PO4c)
5a: 3-(4-HYDROXY-3-IMINO-6-OXO-CYCLOHE... (TYYa)
5b: 3-(4-HYDROXY-3-IMINO-6-OXO-CYCLOHE... (TYYb)
5c: 3-(4-HYDROXY-3-IMINO-6-OXO-CYCLOHE... (TYYc)
5d: 3-(4-HYDROXY-3-IMINO-6-OXO-CYCLOHE... (TYYd)
5e: 3-(4-HYDROXY-3-IMINO-6-OXO-CYCLOHE... (TYYe)
5f: 3-(4-HYDROXY-3-IMINO-6-OXO-CYCLOHE... (TYYf)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CU
-1
Ligand/Ion
COPPER (II) ION
2
GOL
15
Ligand/Ion
GLYCEROL
3
PEO
2
Ligand/Ion
HYDROGEN PEROXIDE
4
PO4
1
Ligand/Ion
PHOSPHATE ION
5
TYY
2
Mod. Amino Acid
3-(4-HYDROXY-3-IMINO-6-OXO-CYCLOHEXA-1,4-DIENYL)-ALANINE
[
close Hetero Component info
]
Sites
(25, 25)
Info
All Sites
01: AC3 (SOFTWARE)
02: AC8 (SOFTWARE)
03: AC9 (SOFTWARE)
04: BC1 (SOFTWARE)
05: BC3 (SOFTWARE)
06: FC2 (SOFTWARE)
07: FC3 (SOFTWARE)
08: FC4 (SOFTWARE)
09: FC5 (SOFTWARE)
10: FC6 (SOFTWARE)
11: FC7 (SOFTWARE)
12: FC8 (SOFTWARE)
13: FC9 (SOFTWARE)
14: GC1 (SOFTWARE)
15: GC2 (SOFTWARE)
16: GC3 (SOFTWARE)
17: GC4 (SOFTWARE)
18: GC5 (SOFTWARE)
19: GC6 (SOFTWARE)
20: GC7 (SOFTWARE)
21: GC8 (SOFTWARE)
22: GC9 (SOFTWARE)
23: HC1 (SOFTWARE)
24: HC2 (SOFTWARE)
25: HC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC3
SOFTWARE
GLN A:66 , GLN A:70 , GLY A:72 , HOH A:954 , HOH A:1348 , TYR F:534 , THR F:650
BINDING SITE FOR RESIDUE GOL A 803
02
AC8
SOFTWARE
LYS A:561 , SER A:591 , HOH A:1245 , LYS F:561 , ASP F:593 , GOL F:811 , HOH F:996
BINDING SITE FOR RESIDUE GOL A 808
03
AC9
SOFTWARE
TRP A:67 , LYS A:68 , HOH F:1636
BINDING SITE FOR RESIDUE GOL A 809
04
BC1
SOFTWARE
GLY A:142 , PRO A:144 , GLU A:147 , TYR A:177 , HOH A:1678 , HOH E:1355
BINDING SITE FOR RESIDUE GOL A 810
05
BC3
SOFTWARE
ASP A:131 , VAL A:203 , ILE A:204 , HOH A:1495 , HOH A:1698 , GLU F:110
BINDING SITE FOR RESIDUE GOL A 812
06
FC2
SOFTWARE
HIS E:456 , HIS E:458 , HIS E:624 , PEO E:802 , HOH E:1439
BINDING SITE FOR RESIDUE CU E 801
07
FC3
SOFTWARE
TYY E:405 , HIS E:456 , HIS E:458 , HIS E:624 , MET E:634 , CU E:801 , HOH E:903 , HOH E:1439
BINDING SITE FOR RESIDUE PEO E 802
08
FC4
SOFTWARE
GLY E:142 , PRO E:144 , GLU E:147 , TYR E:177 , LYS E:217 , HOH E:1249
BINDING SITE FOR RESIDUE GOL E 803
09
FC5
SOFTWARE
PHE E:252 , LYS E:253 , MET E:254 , ILE E:342 , HIS E:343 , HOH E:1507 , HOH E:1656
BINDING SITE FOR RESIDUE GOL E 804
10
FC6
SOFTWARE
GLU E:58 , PRO E:59 , TYR E:575 , ASP E:577 , ASN E:578 , HOH E:947 , HOH E:1524
BINDING SITE FOR RESIDUE GOL E 805
11
FC7
SOFTWARE
PRO E:484 , PRO F:442
BINDING SITE FOR RESIDUE GOL E 806
12
FC8
SOFTWARE
HIS E:23 , TYR E:64 , LYS E:68 , LYS E:265 , ASP E:280 , HOH E:975
BINDING SITE FOR RESIDUE GOL E 807
13
FC9
SOFTWARE
GLU E:368 , LYS E:393 , ARG E:420 , ASP E:422 , ARG E:424 , HOH E:1036 , HOH E:1307 , HOH E:1450 , GLY F:371
BINDING SITE FOR RESIDUE GOL E 808
14
GC1
SOFTWARE
HIS F:456 , HIS F:458 , HIS F:624 , PEO F:802 , HOH F:1402
BINDING SITE FOR RESIDUE CU F 801
15
GC2
SOFTWARE
TYY F:405 , LEU F:429 , HIS F:456 , HIS F:458 , HIS F:624 , MET F:634 , CU F:801 , HOH F:986
BINDING SITE FOR RESIDUE PEO F 802
16
GC3
SOFTWARE
HIS F:23 , TYR F:64 , LYS F:68 , LYS F:265 , ASP F:280 , HOH F:948 , HOH F:1470
BINDING SITE FOR RESIDUE GOL F 803
17
GC4
SOFTWARE
GLY E:371 , LYS F:393 , VAL F:412 , ARG F:420 , ASP F:422 , GOL F:805 , HOH F:1039
BINDING SITE FOR RESIDUE GOL F 804
18
GC5
SOFTWARE
GLY E:371 , ARG E:390 , ASP F:337 , CYS F:338 , LYS F:339 , GLU F:368 , GOL F:804 , HOH F:1338
BINDING SITE FOR RESIDUE GOL F 805
19
GC6
SOFTWARE
PHE F:252 , LYS F:253 , MET F:254 , HIS F:343 , HOH F:1202 , HOH F:1530
BINDING SITE FOR RESIDUE GOL F 806
20
GC7
SOFTWARE
PRO F:484 , TYR F:485 , TYR F:499
BINDING SITE FOR RESIDUE GOL F 807
21
GC8
SOFTWARE
HIS F:218 , LYS F:219
BINDING SITE FOR RESIDUE PO4 F 808
22
GC9
SOFTWARE
LEU F:512 , ASP F:604 , GLY F:605 , HOH F:1072 , HOH F:1382 , HOH F:1566 , HOH F:1628
BINDING SITE FOR RESIDUE GOL F 809
23
HC1
SOFTWARE
GLU A:110 , ALA F:133 , VAL F:203 , ILE F:204 , HOH F:1113 , HOH F:1409 , HOH F:1477 , HOH F:1629
BINDING SITE FOR RESIDUE GOL F 810
24
HC2
SOFTWARE
LYS A:561 , ASP A:593 , GOL A:808 , TYR F:160 , LYS F:561 , SER F:591 , HOH F:996 , HOH F:1517
BINDING SITE FOR RESIDUE GOL F 811
25
HC3
SOFTWARE
GLU F:58 , PRO F:59 , ARG F:61 , TYR F:575 , ASP F:577 , ASN F:578 , HOH F:925 , HOH F:990 , HOH F:1181 , HOH F:1214
BINDING SITE FOR RESIDUE GOL F 812
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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PROSITE Patterns/Profiles
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Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
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CATH Domains
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Pfam Domains
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