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4KFD
Biol. Unit 1
Info
Asym.Unit (1.3 MB)
Biol.Unit 1 (446 KB)
Biol.Unit 2 (450 KB)
Biol.Unit 3 (449 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HANSENULA POLYMORPHA COPPER AMINE OXIDASE-1 REDUCED BY METHYLAMINE AT PH 6.0
Authors
:
B. J. Johnson, E. T. Yukl, V. J. Klema, C. M. Wilmot
Date
:
26 Apr 13 (Deposition) - 21 Aug 13 (Release) - 21 Aug 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.69
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Biol. Unit 3: E,F (1x)
Keywords
:
Amine Oxidase, Oxidoreductase, Peroxisome
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
B. J. Johnson, E. T. Yukl, V. J. Klema, J. P. Klinman, C. M. Wilmot
Structural Evidence For The Semiquinone In A Copper Amine Oxidase From Hansenula Polymorpha: Implications For The Catalytic Mechanism
J. Biol. Chem. 2013
[
close entry info
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Hetero Components
(4, 25)
Info
All Hetero Components
1a: COPPER (II) ION (CUa)
1b: COPPER (II) ION (CUb)
1c: COPPER (II) ION (CUc)
1d: COPPER (II) ION (CUd)
1e: COPPER (II) ION (CUe)
1f: COPPER (II) ION (CUf)
2a: GLYCEROL (GOLa)
2aa: GLYCEROL (GOLaa)
2ab: GLYCEROL (GOLab)
2ac: GLYCEROL (GOLac)
2ad: GLYCEROL (GOLad)
2ae: GLYCEROL (GOLae)
2af: GLYCEROL (GOLaf)
2ag: GLYCEROL (GOLag)
2ah: GLYCEROL (GOLah)
2ai: GLYCEROL (GOLai)
2aj: GLYCEROL (GOLaj)
2ak: GLYCEROL (GOLak)
2al: GLYCEROL (GOLal)
2am: GLYCEROL (GOLam)
2an: GLYCEROL (GOLan)
2ao: GLYCEROL (GOLao)
2ap: GLYCEROL (GOLap)
2aq: GLYCEROL (GOLaq)
2ar: GLYCEROL (GOLar)
2as: GLYCEROL (GOLas)
2at: GLYCEROL (GOLat)
2au: GLYCEROL (GOLau)
2av: GLYCEROL (GOLav)
2aw: GLYCEROL (GOLaw)
2ax: GLYCEROL (GOLax)
2ay: GLYCEROL (GOLay)
2az: GLYCEROL (GOLaz)
2b: GLYCEROL (GOLb)
2c: GLYCEROL (GOLc)
2d: GLYCEROL (GOLd)
2e: GLYCEROL (GOLe)
2f: GLYCEROL (GOLf)
2g: GLYCEROL (GOLg)
2h: GLYCEROL (GOLh)
2i: GLYCEROL (GOLi)
2j: GLYCEROL (GOLj)
2k: GLYCEROL (GOLk)
2l: GLYCEROL (GOLl)
2m: GLYCEROL (GOLm)
2n: GLYCEROL (GOLn)
2o: GLYCEROL (GOLo)
2p: GLYCEROL (GOLp)
2q: GLYCEROL (GOLq)
2r: GLYCEROL (GOLr)
2s: GLYCEROL (GOLs)
2t: GLYCEROL (GOLt)
2u: GLYCEROL (GOLu)
2v: GLYCEROL (GOLv)
2w: GLYCEROL (GOLw)
2x: GLYCEROL (GOLx)
2y: GLYCEROL (GOLy)
2z: GLYCEROL (GOLz)
3a: HYDROGEN PEROXIDE (PEOa)
3b: HYDROGEN PEROXIDE (PEOb)
3c: HYDROGEN PEROXIDE (PEOc)
3d: HYDROGEN PEROXIDE (PEOd)
3e: HYDROGEN PEROXIDE (PEOe)
3f: HYDROGEN PEROXIDE (PEOf)
4a: PHOSPHATE ION (PO4a)
4b: PHOSPHATE ION (PO4b)
4c: PHOSPHATE ION (PO4c)
5a: 3-(4-HYDROXY-3-IMINO-6-OXO-CYCLOHE... (TYYa)
5b: 3-(4-HYDROXY-3-IMINO-6-OXO-CYCLOHE... (TYYb)
5c: 3-(4-HYDROXY-3-IMINO-6-OXO-CYCLOHE... (TYYc)
5d: 3-(4-HYDROXY-3-IMINO-6-OXO-CYCLOHE... (TYYd)
5e: 3-(4-HYDROXY-3-IMINO-6-OXO-CYCLOHE... (TYYe)
5f: 3-(4-HYDROXY-3-IMINO-6-OXO-CYCLOHE... (TYYf)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CU
-1
Ligand/Ion
COPPER (II) ION
2
GOL
20
Ligand/Ion
GLYCEROL
3
PEO
2
Ligand/Ion
HYDROGEN PEROXIDE
4
PO4
1
Ligand/Ion
PHOSPHATE ION
5
TYY
2
Mod. Amino Acid
3-(4-HYDROXY-3-IMINO-6-OXO-CYCLOHEXA-1,4-DIENYL)-ALANINE
[
close Hetero Component info
]
Sites
(31, 31)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: DC3 (SOFTWARE)
27: DC7 (SOFTWARE)
28: DC9 (SOFTWARE)
29: EC5 (SOFTWARE)
30: HC1 (SOFTWARE)
31: HC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS A:456 , HIS A:458 , HIS A:624 , PEO A:802 , HOH A:1428
BINDING SITE FOR RESIDUE CU A 801
02
AC2
SOFTWARE
TYY A:405 , HIS A:456 , HIS A:624 , MET A:634 , CU A:801 , HOH A:1052 , HOH A:1428
BINDING SITE FOR RESIDUE PEO A 802
03
AC3
SOFTWARE
GLN A:66 , GLN A:70 , GLY A:72 , HOH A:954 , HOH A:1348 , TYR F:534 , THR F:650
BINDING SITE FOR RESIDUE GOL A 803
04
AC4
SOFTWARE
LYS A:214 , VAL A:215 , GLY A:435 , ASP A:436 , HOH A:1131
BINDING SITE FOR RESIDUE GOL A 804
05
AC5
SOFTWARE
GLU A:368 , LYS A:393 , VAL A:412 , ASP A:422 , HOH A:1069 , HOH A:1561 , HOH A:1579 , GLY B:371
BINDING SITE FOR RESIDUE GOL A 805
06
AC6
SOFTWARE
PRO A:484 , HOH A:1690 , PRO B:442
BINDING SITE FOR RESIDUE GOL A 806
07
AC7
SOFTWARE
HIS A:218 , LYS A:219 , TYR A:448
BINDING SITE FOR RESIDUE GOL A 807
08
AC8
SOFTWARE
LYS A:561 , SER A:591 , HOH A:1245 , LYS F:561 , ASP F:593 , GOL F:811 , HOH F:996
BINDING SITE FOR RESIDUE GOL A 808
09
AC9
SOFTWARE
TRP A:67 , LYS A:68 , HOH F:1636
BINDING SITE FOR RESIDUE GOL A 809
10
BC1
SOFTWARE
GLY A:142 , PRO A:144 , GLU A:147 , TYR A:177 , HOH A:1678 , HOH E:1355
BINDING SITE FOR RESIDUE GOL A 810
11
BC2
SOFTWARE
ARG A:61 , LYS A:62 , ILE A:65 , ASP A:471 , ASP A:613 , HOH A:1323 , HOH A:1533 , HOH A:1663
BINDING SITE FOR RESIDUE GOL A 811
12
BC3
SOFTWARE
ASP A:131 , VAL A:203 , ILE A:204 , HOH A:1495 , HOH A:1698 , GLU F:110
BINDING SITE FOR RESIDUE GOL A 812
13
BC4
SOFTWARE
PRO A:59 , ARG A:61 , HIS A:294 , TYR A:575 , ASN A:578 , HOH A:911 , HOH A:1139 , HOH A:1302 , HOH A:1407
BINDING SITE FOR RESIDUE GOL A 813
14
BC5
SOFTWARE
SER A:251 , LYS A:253 , GLU A:260 , HOH A:1191 , HOH A:1255
BINDING SITE FOR RESIDUE GOL A 814
15
BC6
SOFTWARE
HIS B:456 , HIS B:458 , HIS B:624 , PEO B:802
BINDING SITE FOR RESIDUE CU B 801
16
BC7
SOFTWARE
TYY B:405 , LEU B:429 , HIS B:456 , HIS B:458 , HIS B:624 , MET B:634 , CU B:801 , HOH B:1096
BINDING SITE FOR RESIDUE PEO B 802
17
BC8
SOFTWARE
GLY A:371 , GLU B:368 , LYS B:393 , VAL B:412 , ARG B:420 , ASP B:422 , HOH B:1031 , HOH B:1527
BINDING SITE FOR RESIDUE GOL B 803
18
BC9
SOFTWARE
PRO B:59 , ALA B:60 , ARG B:61 , HIS B:294 , TYR B:575 , ASN B:578 , HOH B:908 , HOH B:1039 , HOH B:1051 , HOH B:1287
BINDING SITE FOR RESIDUE GOL B 804
19
CC1
SOFTWARE
PRO A:442 , PRO B:484 , TYR B:499
BINDING SITE FOR RESIDUE GOL B 805
20
CC2
SOFTWARE
TYR A:534 , HIS B:218 , LYS B:219 , TYR B:448 , PO4 B:810 , HOH B:1636
BINDING SITE FOR RESIDUE GOL B 806
21
CC3
SOFTWARE
LYS B:561 , SER B:591 , HOH B:990 , HOH B:1399 , LYS C:561 , ASP C:593 , GOL C:811
BINDING SITE FOR RESIDUE GOL B 807
22
CC4
SOFTWARE
ARG B:61 , ASP B:613 , HOH B:1516 , HOH B:1635 , HOH D:1396
BINDING SITE FOR RESIDUE GOL B 808
23
CC5
SOFTWARE
LYS B:214 , VAL B:215 , ASP B:436 , ASN B:450 , HOH B:1023 , HOH B:1659
BINDING SITE FOR RESIDUE GOL B 809
24
CC6
SOFTWARE
HIS B:218 , LYS B:219 , GOL B:806
BINDING SITE FOR RESIDUE PO4 B 810
25
CC7
SOFTWARE
GLY B:142 , PRO B:144 , GLU B:147 , TYR B:177 , VAL B:215 , HOH B:1147 , HOH D:1545
BINDING SITE FOR RESIDUE GOL B 811
26
DC3
SOFTWARE
LYS B:68 , HOH C:1556
BINDING SITE FOR RESIDUE GOL C 805
27
DC7
SOFTWARE
GLN B:66 , GLN B:70 , GLY B:72 , TYR C:534 , THR C:650 , GLU C:651 , HOH C:942 , HOH C:1509 , LYS D:231
BINDING SITE FOR RESIDUE GOL C 809
28
DC9
SOFTWARE
LYS B:561 , ASP B:593 , GOL B:807 , HOH B:990 , TYR C:160 , LYS C:561 , SER C:591 , HOH C:1535
BINDING SITE FOR RESIDUE GOL C 811
29
EC5
SOFTWARE
LYS B:62 , ALA B:63 , GLN B:66 , PRO B:73 , HOH B:1010 , HOH B:1348 , HOH B:1625 , LYS D:231 , VAL D:232 , GLY D:233
BINDING SITE FOR RESIDUE GOL D 806
30
HC1
SOFTWARE
GLU A:110 , ALA F:133 , VAL F:203 , ILE F:204 , HOH F:1113 , HOH F:1409 , HOH F:1477 , HOH F:1629
BINDING SITE FOR RESIDUE GOL F 810
31
HC2
SOFTWARE
LYS A:561 , ASP A:593 , GOL A:808 , TYR F:160 , LYS F:561 , SER F:591 , HOH F:996 , HOH F:1517
BINDING SITE FOR RESIDUE GOL F 811
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
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SCOP Domains
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CATH Domains
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Pfam Domains
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Sorry, no Info available
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Asym.Unit (1.3 MB)
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