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4KES
Biol. Unit 1
Info
Asym.Unit (447 KB)
Biol.Unit 1 (220 KB)
Biol.Unit 2 (223 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF SSOPOX W263T
Authors
:
G. Gotthard, J. Hiblot, E. Chabriere, M. Elias
Date
:
26 Apr 13 (Deposition) - 02 Oct 13 (Release) - 20 Nov 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.10
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,C (1x)
Biol. Unit 2: B,D (1x)
Keywords
:
(Beta/Alpha)8-Hydrolase, Lactonase, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. Hiblot, G. Gotthard, M. Elias, E. Chabriere
Differential Active Site Loop Conformations Mediate Promiscuous Activities In The Lactonase Ssopox.
Plos One V. 8 75272 2013
[
close entry info
]
Hetero Components
(5, 16)
Info
All Hetero Components
1a: COBALT (II) ION (COa)
1b: COBALT (II) ION (COb)
1c: COBALT (II) ION (COc)
1d: COBALT (II) ION (COd)
2a: 1,2-ETHANEDIOL (EDOa)
2b: 1,2-ETHANEDIOL (EDOb)
2c: 1,2-ETHANEDIOL (EDOc)
2d: 1,2-ETHANEDIOL (EDOd)
2e: 1,2-ETHANEDIOL (EDOe)
2f: 1,2-ETHANEDIOL (EDOf)
2g: 1,2-ETHANEDIOL (EDOg)
2h: 1,2-ETHANEDIOL (EDOh)
2i: 1,2-ETHANEDIOL (EDOi)
2j: 1,2-ETHANEDIOL (EDOj)
3a: FE (II) ION (FE2a)
3b: FE (II) ION (FE2b)
3c: FE (II) ION (FE2c)
3d: FE (II) ION (FE2d)
4a: GLYCEROL (GOLa)
4b: GLYCEROL (GOLb)
4c: GLYCEROL (GOLc)
4d: GLYCEROL (GOLd)
4e: GLYCEROL (GOLe)
4f: GLYCEROL (GOLf)
4g: GLYCEROL (GOLg)
4h: GLYCEROL (GOLh)
4i: GLYCEROL (GOLi)
4j: GLYCEROL (GOLj)
4k: GLYCEROL (GOLk)
4l: GLYCEROL (GOLl)
4m: GLYCEROL (GOLm)
4n: GLYCEROL (GOLn)
5a: LYSINE NZ-CARBOXYLIC ACID (KCXa)
5b: LYSINE NZ-CARBOXYLIC ACID (KCXb)
5c: LYSINE NZ-CARBOXYLIC ACID (KCXc)
5d: LYSINE NZ-CARBOXYLIC ACID (KCXd)
6a: DI(HYDROXYETHYL)ETHER (PEGa)
6b: DI(HYDROXYETHYL)ETHER (PEGb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CO
-1
Ligand/Ion
COBALT (II) ION
2
EDO
5
Ligand/Ion
1,2-ETHANEDIOL
3
FE2
2
Ligand/Ion
FE (II) ION
4
GOL
6
Ligand/Ion
GLYCEROL
5
KCX
2
Mod. Amino Acid
LYSINE NZ-CARBOXYLIC ACID
6
PEG
1
Ligand/Ion
DI(HYDROXYETHYL)ETHER
[
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Sites
(18, 18)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC6 (SOFTWARE)
14: CC4 (SOFTWARE)
15: CC5 (SOFTWARE)
16: CC6 (SOFTWARE)
17: CC7 (SOFTWARE)
18: CC8 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS A:22 , HIS A:24 , KCX A:137 , ASP A:256 , CO A:402 , EDO A:407 , HOH A:591
BINDING SITE FOR RESIDUE FE2 A 401
02
AC2
SOFTWARE
KCX A:137 , HIS A:170 , HIS A:199 , FE2 A:401 , EDO A:407 , HOH A:591
BINDING SITE FOR RESIDUE CO A 402
03
AC3
SOFTWARE
ASP A:256 , EDO A:407
BINDING SITE FOR RESIDUE PEG A 403
04
AC4
SOFTWARE
ASN A:160 , LYS A:164 , GLY A:189 , ASP A:191 , LYS A:194 , HOH A:545
BINDING SITE FOR RESIDUE GOL A 404
05
AC5
SOFTWARE
SER A:171 , ASN A:172 , ALA A:173 , HIS A:174 , ASP A:202 , PHE A:229 , HOH A:568 , HOH A:590
BINDING SITE FOR RESIDUE GOL A 405
06
AC6
SOFTWARE
ARG A:55 , THR A:281 , GLU A:285 , HOH A:553 , HOH A:631 , PRO B:289 , LYS B:292
BINDING SITE FOR RESIDUE EDO A 406
07
AC7
SOFTWARE
TYR A:97 , KCX A:137 , FE2 A:401 , CO A:402 , PEG A:403 , HOH A:591
BINDING SITE FOR RESIDUE EDO A 407
08
AC8
SOFTWARE
PRO A:289 , ARG A:293 , PRO B:276 , ARG B:277 , HOH B:529 , HOH B:577 , HOH B:586
BINDING SITE FOR RESIDUE GOL A 408
09
AC9
SOFTWARE
LEU A:102 , PRO A:103 , PHE A:104 , PHE A:106 , LEU A:107 , ASP A:148 , LYS A:151
BINDING SITE FOR RESIDUE GOL A 409
10
BC1
SOFTWARE
PRO A:4 , LEU A:5 , LYS A:8 , ASP A:9 , SER A:10 , LEU A:130 , ASN A:131 , LYS A:132 , HOH A:639
BINDING SITE FOR RESIDUE GOL A 410
11
BC2
SOFTWARE
ILE A:98 , TYR A:99 , ILE A:100 , ASP A:101 , HOH A:511 , HOH A:574 , PHE C:104
BINDING SITE FOR RESIDUE EDO A 411
12
BC3
SOFTWARE
PHE A:18 , LYS A:292 , GLU A:298 , HOH A:599 , GLN B:58 , HOH B:659
BINDING SITE FOR RESIDUE EDO B 401
13
BC6
SOFTWARE
ASN B:160 , LYS B:164 , GLY B:189 , ASP B:191 , HOH B:610 , HOH B:663 , MET C:1
BINDING SITE FOR RESIDUE GOL B 404
14
CC4
SOFTWARE
HIS C:22 , HIS C:24 , KCX C:137 , ASP C:256 , CO C:402 , HOH C:572
BINDING SITE FOR RESIDUE FE2 C 401
15
CC5
SOFTWARE
KCX C:137 , HIS C:170 , HIS C:199 , FE2 C:401 , HOH C:572
BINDING SITE FOR RESIDUE CO C 402
16
CC6
SOFTWARE
ARG A:77 , ASN C:160 , LYS C:164 , GLY C:189 , VAL C:190 , ASP C:191 , LYS C:194
BINDING SITE FOR RESIDUE GOL C 403
17
CC7
SOFTWARE
ARG C:33 , PRO C:37
BINDING SITE FOR RESIDUE EDO C 404
18
CC8
SOFTWARE
ASN C:172 , ALA C:173 , HIS C:174 , ASP C:202 , PHE C:229 , HOH C:589
BINDING SITE FOR RESIDUE EDO C 405
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(, 0)
Info
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;
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d4kesa_ (A:)
1b: SCOP_d4kesb_ (B:)
1c: SCOP_d4kesc_ (C:)
1d: SCOP_d4kesd_ (D:)
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(
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
TIM beta/alpha-barrel
(3956)
Superfamily
:
Metallo-dependent hydrolases
(273)
Family
:
automated matches
(44)
Protein domain
:
automated matches
(44)
Sulfolobus solfataricus [TaxId: 2287]
(10)
1a
d4kesa_
A:
1b
d4kesb_
B:
1c
d4kesc_
C:
1d
d4kesd_
D:
[
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]
CATH Domains
(0, 0)
Info
all CATH domains
View:
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Label:
Sorry, no Info available
[
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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Chain A
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Asymmetric Unit 1
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
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show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
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Show PDB file:
Asym.Unit (447 KB)
Header - Asym.Unit
Biol.Unit 1 (220 KB)
Header - Biol.Unit 1
Biol.Unit 2 (223 KB)
Header - Biol.Unit 2
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