PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
No precomputed SNP/Variant structure found.
Calculating the structure may take several minutes.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
4KES
Asym. Unit
Info
Asym.Unit (447 KB)
Biol.Unit 1 (220 KB)
Biol.Unit 2 (223 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
CRYSTAL STRUCTURE OF SSOPOX W263T
Authors
:
G. Gotthard, J. Hiblot, E. Chabriere, M. Elias
Date
:
26 Apr 13 (Deposition) - 02 Oct 13 (Release) - 20 Nov 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.10
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,C (1x)
Biol. Unit 2: B,D (1x)
Keywords
:
(Beta/Alpha)8-Hydrolase, Lactonase, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. Hiblot, G. Gotthard, M. Elias, E. Chabriere
Differential Active Site Loop Conformations Mediate Promiscuous Activities In The Lactonase Ssopox.
Plos One V. 8 75272 2013
[
close entry info
]
Hetero Components
(6, 38)
Info
All Hetero Components
1a: COBALT (II) ION (COa)
1b: COBALT (II) ION (COb)
1c: COBALT (II) ION (COc)
1d: COBALT (II) ION (COd)
2a: 1,2-ETHANEDIOL (EDOa)
2b: 1,2-ETHANEDIOL (EDOb)
2c: 1,2-ETHANEDIOL (EDOc)
2d: 1,2-ETHANEDIOL (EDOd)
2e: 1,2-ETHANEDIOL (EDOe)
2f: 1,2-ETHANEDIOL (EDOf)
2g: 1,2-ETHANEDIOL (EDOg)
2h: 1,2-ETHANEDIOL (EDOh)
2i: 1,2-ETHANEDIOL (EDOi)
2j: 1,2-ETHANEDIOL (EDOj)
3a: FE (II) ION (FE2a)
3b: FE (II) ION (FE2b)
3c: FE (II) ION (FE2c)
3d: FE (II) ION (FE2d)
4a: GLYCEROL (GOLa)
4b: GLYCEROL (GOLb)
4c: GLYCEROL (GOLc)
4d: GLYCEROL (GOLd)
4e: GLYCEROL (GOLe)
4f: GLYCEROL (GOLf)
4g: GLYCEROL (GOLg)
4h: GLYCEROL (GOLh)
4i: GLYCEROL (GOLi)
4j: GLYCEROL (GOLj)
4k: GLYCEROL (GOLk)
4l: GLYCEROL (GOLl)
4m: GLYCEROL (GOLm)
4n: GLYCEROL (GOLn)
5a: LYSINE NZ-CARBOXYLIC ACID (KCXa)
5b: LYSINE NZ-CARBOXYLIC ACID (KCXb)
5c: LYSINE NZ-CARBOXYLIC ACID (KCXc)
5d: LYSINE NZ-CARBOXYLIC ACID (KCXd)
6a: DI(HYDROXYETHYL)ETHER (PEGa)
6b: DI(HYDROXYETHYL)ETHER (PEGb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CO
4
Ligand/Ion
COBALT (II) ION
2
EDO
10
Ligand/Ion
1,2-ETHANEDIOL
3
FE2
4
Ligand/Ion
FE (II) ION
4
GOL
14
Ligand/Ion
GLYCEROL
5
KCX
4
Mod. Amino Acid
LYSINE NZ-CARBOXYLIC ACID
6
PEG
2
Ligand/Ion
DI(HYDROXYETHYL)ETHER
[
close Hetero Component info
]
Sites
(34, 34)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
34: DC7 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS A:22 , HIS A:24 , KCX A:137 , ASP A:256 , CO A:402 , EDO A:407 , HOH A:591
BINDING SITE FOR RESIDUE FE2 A 401
02
AC2
SOFTWARE
KCX A:137 , HIS A:170 , HIS A:199 , FE2 A:401 , EDO A:407 , HOH A:591
BINDING SITE FOR RESIDUE CO A 402
03
AC3
SOFTWARE
ASP A:256 , EDO A:407
BINDING SITE FOR RESIDUE PEG A 403
04
AC4
SOFTWARE
ASN A:160 , LYS A:164 , GLY A:189 , ASP A:191 , LYS A:194 , HOH A:545
BINDING SITE FOR RESIDUE GOL A 404
05
AC5
SOFTWARE
SER A:171 , ASN A:172 , ALA A:173 , HIS A:174 , ASP A:202 , PHE A:229 , HOH A:568 , HOH A:590
BINDING SITE FOR RESIDUE GOL A 405
06
AC6
SOFTWARE
ARG A:55 , THR A:281 , GLU A:285 , HOH A:553 , HOH A:631 , PRO B:289 , LYS B:292
BINDING SITE FOR RESIDUE EDO A 406
07
AC7
SOFTWARE
TYR A:97 , KCX A:137 , FE2 A:401 , CO A:402 , PEG A:403 , HOH A:591
BINDING SITE FOR RESIDUE EDO A 407
08
AC8
SOFTWARE
PRO A:289 , ARG A:293 , PRO B:276 , ARG B:277 , HOH B:529 , HOH B:577 , HOH B:586
BINDING SITE FOR RESIDUE GOL A 408
09
AC9
SOFTWARE
LEU A:102 , PRO A:103 , PHE A:104 , PHE A:106 , LEU A:107 , ASP A:148 , LYS A:151
BINDING SITE FOR RESIDUE GOL A 409
10
BC1
SOFTWARE
PRO A:4 , LEU A:5 , LYS A:8 , ASP A:9 , SER A:10 , LEU A:130 , ASN A:131 , LYS A:132 , HOH A:639
BINDING SITE FOR RESIDUE GOL A 410
11
BC2
SOFTWARE
ILE A:98 , TYR A:99 , ILE A:100 , ASP A:101 , HOH A:511 , HOH A:574 , PHE C:104
BINDING SITE FOR RESIDUE EDO A 411
12
BC3
SOFTWARE
PHE A:18 , LYS A:292 , GLU A:298 , HOH A:599 , GLN B:58 , HOH B:659
BINDING SITE FOR RESIDUE EDO B 401
13
BC4
SOFTWARE
HIS B:22 , HIS B:24 , KCX B:137 , ASP B:256 , CO B:403 , HOH B:600
BINDING SITE FOR RESIDUE FE2 B 402
14
BC5
SOFTWARE
KCX B:137 , HIS B:170 , HIS B:199 , FE2 B:402 , HOH B:600
BINDING SITE FOR RESIDUE CO B 403
15
BC6
SOFTWARE
ASN B:160 , LYS B:164 , GLY B:189 , ASP B:191 , HOH B:610 , HOH B:663 , MET C:1
BINDING SITE FOR RESIDUE GOL B 404
16
BC7
SOFTWARE
PRO B:4 , LEU B:5 , LYS B:8 , ASP B:9 , SER B:10 , LEU B:130 , ASN B:131 , LYS B:132
BINDING SITE FOR RESIDUE GOL B 405
17
BC8
SOFTWARE
SER B:171 , ASN B:172 , ALA B:173 , HIS B:174 , ASP B:202 , PHE B:229 , HOH B:597 , HOH B:644
BINDING SITE FOR RESIDUE GOL B 406
18
BC9
SOFTWARE
ALA B:173 , HIS B:174 , ASN B:175 , ASN B:176 , ASN B:205 , TYR B:208
BINDING SITE FOR RESIDUE GOL B 407
19
CC1
SOFTWARE
ARG B:154 , GLU B:188
BINDING SITE FOR RESIDUE PEG B 408
20
CC2
SOFTWARE
HIS B:120 , GLU B:124 , GLY B:128 , THR B:129 , HOH B:518 , HOH B:645
BINDING SITE FOR RESIDUE GOL B 409
21
CC3
SOFTWARE
PHE B:18 , LYS B:292 , GLU B:298 , HOH B:553 , HOH B:640 , HOH B:664
BINDING SITE FOR RESIDUE EDO B 410
22
CC4
SOFTWARE
HIS C:22 , HIS C:24 , KCX C:137 , ASP C:256 , CO C:402 , HOH C:572
BINDING SITE FOR RESIDUE FE2 C 401
23
CC5
SOFTWARE
KCX C:137 , HIS C:170 , HIS C:199 , FE2 C:401 , HOH C:572
BINDING SITE FOR RESIDUE CO C 402
24
CC6
SOFTWARE
ARG A:77 , ASN C:160 , LYS C:164 , GLY C:189 , VAL C:190 , ASP C:191 , LYS C:194
BINDING SITE FOR RESIDUE GOL C 403
25
CC7
SOFTWARE
ARG C:33 , PRO C:37
BINDING SITE FOR RESIDUE EDO C 404
26
CC8
SOFTWARE
ASN C:172 , ALA C:173 , HIS C:174 , ASP C:202 , PHE C:229 , HOH C:589
BINDING SITE FOR RESIDUE EDO C 405
27
CC9
SOFTWARE
HIS D:22 , HIS D:24 , KCX D:137 , ASP D:256 , CO D:402 , HOH D:561
BINDING SITE FOR RESIDUE FE2 D 401
28
DC1
SOFTWARE
KCX D:137 , HIS D:170 , HIS D:199 , FE2 D:401 , EDO D:403 , HOH D:561
BINDING SITE FOR RESIDUE CO D 402
29
DC2
SOFTWARE
TYR D:97 , KCX D:137 , HIS D:170 , ARG D:223 , CO D:402 , HOH D:561
BINDING SITE FOR RESIDUE EDO D 403
30
DC3
SOFTWARE
ASN D:172 , ALA D:173 , HIS D:174 , ASP D:202 , PHE D:229 , HOH D:522
BINDING SITE FOR RESIDUE GOL D 404
31
DC4
SOFTWARE
ALA D:173 , HIS D:174 , ASN D:175 , ASN D:176 , ASN D:205
BINDING SITE FOR RESIDUE GOL D 405
32
DC5
SOFTWARE
ASN D:160 , LYS D:164 , GLY D:189 , VAL D:190 , ASP D:191 , LYS D:194
BINDING SITE FOR RESIDUE GOL D 406
33
DC6
SOFTWARE
ARG D:26 , PHE D:28 , GLY D:73 , ARG D:74 , ASP D:75 , MET D:79 , HOH D:524
BINDING SITE FOR RESIDUE EDO D 407
34
DC7
SOFTWARE
VAL D:6 , GLY D:7 , GLU D:80 , LYS D:84 , ASN D:131 , HOH D:536
BINDING SITE FOR RESIDUE EDO D 408
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
Select:
Label:
End label:
Sorry, no Info available
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d4kesa_ (A:)
1b: SCOP_d4kesb_ (B:)
1c: SCOP_d4kesc_ (C:)
1d: SCOP_d4kesd_ (D:)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
TIM beta/alpha-barrel
(3956)
Superfamily
:
Metallo-dependent hydrolases
(273)
Family
:
automated matches
(44)
Protein domain
:
automated matches
(44)
Sulfolobus solfataricus [TaxId: 2287]
(10)
1a
d4kesa_
A:
1b
d4kesb_
B:
1c
d4kesc_
C:
1d
d4kesd_
D:
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Chain C
Chain D
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (447 KB)
Header - Asym.Unit
Biol.Unit 1 (220 KB)
Header - Biol.Unit 1
Biol.Unit 2 (223 KB)
Header - Biol.Unit 2
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
4KES
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help
