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4KBP
Biol. Unit 2
Info
Asym.Unit (300 KB)
Biol.Unit 1 (149 KB)
Biol.Unit 2 (149 KB)
Biol.Unit 3 (149 KB)
Biol.Unit 4 (292 KB)
Biol.Unit 5 (292 KB)
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(1)
Title
:
KIDNEY BEAN PURPLE ACID PHOSPHATASE
Authors
:
T. Klabunde, N. Strater, B. Krebs
Date
:
02 Oct 95 (Deposition) - 07 Dec 96 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.70
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A (2x)
Biol. Unit 2: B,C (1x)
Biol. Unit 3: D (2x)
Biol. Unit 4: A,D (2x)
Biol. Unit 5: B,C (2x)
Keywords
:
Purple Acid Phosphatase, Hydrolase (Phosphoric Monoester)
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
T. Klabunde, N. Strater, R. Frohlich, H. Witzel, B. Krebs
Mechanism Of Fe(Iii)-Zn(Ii) Purple Acid Phosphatase Based O Crystal Structures.
J. Mol. Biol. V. 259 737 1996
(for further references see the
PDB file header
)
[
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Hetero Components
(2, 12)
Info
All Hetero Components
1a: FE (III) ION (FEa)
1b: FE (III) ION (FEb)
1c: FE (III) ION (FEc)
1d: FE (III) ION (FEd)
2a: N-ACETYL-D-GLUCOSAMINE (NAGa)
2b: N-ACETYL-D-GLUCOSAMINE (NAGb)
2c: N-ACETYL-D-GLUCOSAMINE (NAGc)
2d: N-ACETYL-D-GLUCOSAMINE (NAGd)
2e: N-ACETYL-D-GLUCOSAMINE (NAGe)
2f: N-ACETYL-D-GLUCOSAMINE (NAGf)
2g: N-ACETYL-D-GLUCOSAMINE (NAGg)
2h: N-ACETYL-D-GLUCOSAMINE (NAGh)
2i: N-ACETYL-D-GLUCOSAMINE (NAGi)
2j: N-ACETYL-D-GLUCOSAMINE (NAGj)
2k: N-ACETYL-D-GLUCOSAMINE (NAGk)
2l: N-ACETYL-D-GLUCOSAMINE (NAGl)
2m: N-ACETYL-D-GLUCOSAMINE (NAGm)
2n: N-ACETYL-D-GLUCOSAMINE (NAGn)
2o: N-ACETYL-D-GLUCOSAMINE (NAGo)
2p: N-ACETYL-D-GLUCOSAMINE (NAGp)
2q: N-ACETYL-D-GLUCOSAMINE (NAGq)
2r: N-ACETYL-D-GLUCOSAMINE (NAGr)
2s: N-ACETYL-D-GLUCOSAMINE (NAGs)
2t: N-ACETYL-D-GLUCOSAMINE (NAGt)
3a: PHOSPHATE ION (PO4a)
3b: PHOSPHATE ION (PO4b)
3c: PHOSPHATE ION (PO4c)
3d: PHOSPHATE ION (PO4d)
4a: ZINC ION (ZNa)
4b: ZINC ION (ZNb)
4c: ZINC ION (ZNc)
4d: ZINC ION (ZNd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
FE
-1
Ligand/Ion
FE (III) ION
2
NAG
10
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
3
PO4
2
Ligand/Ion
PHOSPHATE ION
4
ZN
-1
Ligand/Ion
ZINC ION
[
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]
Sites
(19, 19)
Info
All Sites
01: AC6 (SOFTWARE)
02: AC7 (SOFTWARE)
03: AC8 (SOFTWARE)
04: AC9 (SOFTWARE)
05: ACB (UNKNOWN)
06: ACC (UNKNOWN)
07: BC1 (SOFTWARE)
08: BC2 (SOFTWARE)
09: BC3 (SOFTWARE)
10: BC4 (SOFTWARE)
11: BC5 (SOFTWARE)
12: BC6 (SOFTWARE)
13: CC2 (SOFTWARE)
14: CC6 (SOFTWARE)
15: CC7 (SOFTWARE)
16: CC8 (SOFTWARE)
17: CC9 (SOFTWARE)
18: DC1 (SOFTWARE)
19: DC2 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC6
SOFTWARE
TYR B:24 , ASP B:50 , GLU B:51 , ASN B:81
BINDING SITE FOR RESIDUE NAG B 433A
02
AC7
SOFTWARE
TYR B:24 , ARG B:108 , ASN B:109
BINDING SITE FOR RESIDUE NAG B 434A
03
AC8
SOFTWARE
MET B:11 , ASP B:16 , ASN B:143 , SER B:147 , ARG B:188
BINDING SITE FOR RESIDUE NAG B 435A
04
AC9
SOFTWARE
PRO B:208 , GLU B:209 , ASN B:211
BINDING SITE FOR RESIDUE NAG B 436A
05
ACB
UNKNOWN
FE B:438 , ZN B:439
PHOSPHATASE ACTIVE SITE.
06
ACC
UNKNOWN
FE C:438 , ZN C:439
PHOSPHATASE ACTIVE SITE.
07
BC1
SOFTWARE
ASN B:396 , TRP B:419
BINDING SITE FOR RESIDUE NAG B 437A
08
BC2
SOFTWARE
TYR C:24 , ASP C:50 , GLU C:51 , ASN C:81
BINDING SITE FOR RESIDUE NAG C 433A
09
BC3
SOFTWARE
TYR C:24 , ARG C:108 , ASN C:109
BINDING SITE FOR RESIDUE NAG C 434A
10
BC4
SOFTWARE
MET C:11 , ASP C:16 , ASN C:143 , SER C:147 , ARG C:188
BINDING SITE FOR RESIDUE NAG C 435A
11
BC5
SOFTWARE
PRO C:208 , GLU C:209 , ASN C:211
BINDING SITE FOR RESIDUE NAG C 436A
12
BC6
SOFTWARE
ASN C:396 , HIS C:399 , TRP C:419
BINDING SITE FOR RESIDUE NAG C 437A
13
CC2
SOFTWARE
ARG C:397 , ASN D:396 , HIS D:399 , TRP D:419
BINDING SITE FOR RESIDUE NAG D 437A
14
CC6
SOFTWARE
ASP B:135 , ASP B:164 , TYR B:167 , HIS B:325 , ZN B:439 , PO4 B:440
BINDING SITE FOR RESIDUE FE B 438
15
CC7
SOFTWARE
ASP B:164 , ASN B:201 , HIS B:286 , HIS B:323 , FE B:438 , PO4 B:440
BINDING SITE FOR RESIDUE ZN B 439
16
CC8
SOFTWARE
ASP B:164 , TYR B:167 , ASN B:201 , HIS B:202 , HIS B:295 , HIS B:296 , HIS B:323 , HIS B:325 , FE B:438 , ZN B:439
BINDING SITE FOR RESIDUE PO4 B 440
17
CC9
SOFTWARE
ASP C:135 , ASP C:164 , TYR C:167 , HIS C:325 , ZN C:439 , PO4 C:440
BINDING SITE FOR RESIDUE FE C 438
18
DC1
SOFTWARE
ASP C:164 , ASN C:201 , HIS C:286 , HIS C:323 , FE C:438 , PO4 C:440
BINDING SITE FOR RESIDUE ZN C 439
19
DC2
SOFTWARE
ASP C:135 , ASP C:164 , TYR C:167 , ASN C:201 , HIS C:202 , HIS C:296 , HIS C:323 , HIS C:325 , FE C:438 , ZN C:439
BINDING SITE FOR RESIDUE PO4 C 440
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(, 0)
Info
All PROSITE Patterns/Profiles
;
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Sorry, no Info available
[
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(2, 8)
Info
All SCOP Domains
1a: SCOP_d4kbpa1 (A:9-120)
1b: SCOP_d4kbpb1 (B:9-120)
1c: SCOP_d4kbpc1 (C:9-120)
1d: SCOP_d4kbpd1 (D:9-120)
2a: SCOP_d4kbpa2 (A:121-432)
2b: SCOP_d4kbpb2 (B:121-432)
2c: SCOP_d4kbpc2 (C:121-432)
2d: SCOP_d4kbpd2 (D:121-432)
View:
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Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
Purple acid phosphatase, N-terminal domain
(9)
Family
:
Purple acid phosphatase, N-terminal domain
(4)
Protein domain
:
Purple acid phosphatase, N-terminal domain
(4)
French bean (Phaseolus vulgaris) [TaxId: 3885]
(3)
1a
d4kbpa1
A:9-120
1b
d4kbpb1
B:9-120
1c
d4kbpc1
C:9-120
1d
d4kbpd1
D:9-120
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Metallo-dependent phosphatases
(115)
Superfamily
:
Metallo-dependent phosphatases
(115)
Family
:
Purple acid phosphatase-like
(14)
Protein domain
:
Plant purple acid phosphatase, catalytic domain
(4)
French bean (Phaseolus vulgaris) [TaxId: 3885]
(3)
2a
d4kbpa2
A:121-432
2b
d4kbpb2
B:121-432
2c
d4kbpc2
C:121-432
2d
d4kbpd2
D:121-432
[
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]
CATH Domains
(2, 8)
Info
all CATH domains
1a: CATH_4kbpA02 (A:123-432)
1b: CATH_4kbpB02 (B:123-432)
1c: CATH_4kbpC02 (C:123-432)
1d: CATH_4kbpD02 (D:123-432)
2a: CATH_4kbpA01 (A:26-122)
2b: CATH_4kbpB01 (B:26-122)
2c: CATH_4kbpC01 (C:26-122)
2d: CATH_4kbpD01 (D:26-122)
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)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
4-Layer Sandwich
(459)
Topology
:
Purple Acid Phosphatase; chain A, domain 2
(87)
Homologous Superfamily
:
[code=3.60.21.10, no name defined]
(83)
Phaseolus vulgaris. Organism_taxid: 3885
(3)
1a
4kbpA02
A:123-432
1b
4kbpB02
B:123-432
1c
4kbpC02
C:123-432
1d
4kbpD02
D:123-432
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
Purple acid phosphatase, domain1
(6)
Phaseolus vulgaris. Organism_taxid: 3885
(3)
2a
4kbpA01
A:26-122
2b
4kbpB01
B:26-122
2c
4kbpC01
C:26-122
2d
4kbpD01
D:26-122
[
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]
Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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