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4KBN
Asym. Unit
Info
Asym.Unit (84 KB)
Biol.Unit 1 (41 KB)
Biol.Unit 2 (41 KB)
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(1)
Title
:
HUMAN DIHYDROFOLATE REDUCTASE COMPLEXED WITH NADPH AND 5-{3-[3-(3,5-PYRIMIDINE)]-PHENYL-PROP-1-YN-1-YL}-6-ETHYL-PYRIMIDINE-2,4DIAMINE
Authors
:
K. M. Lamb, A. C. Anderson
Date
:
23 Apr 13 (Deposition) - 09 Oct 13 (Release) - 20 Nov 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.84
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Oxidoreductase, 5, 6, 7, 8-Tetrahydrofolate, Nadp+, Hydride Shift, Cytosol, Oxidoreductase-Oxidoreductase Inhibitor Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
K. M. Lamb, N. G-Dayanandan, D. L. Wright, A. C. Anderson
Elucidating Features That Drive The Design Of Selective Antifolates Using Crystal Structures Of Human Dihydrofolate Reductase.
Biochemistry V. 52 7318 2013
[
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Hetero Components
(7, 26)
Info
All Hetero Components
1a: 6-ETHYL-5-{3-[3-(PYRIMIDIN-5-YL)PH... (25Ua)
1b: 6-ETHYL-5-{3-[3-(PYRIMIDIN-5-YL)PH... (25Ub)
2a: CHLORIDE ION (CLa)
2b: CHLORIDE ION (CLb)
2c: CHLORIDE ION (CLc)
2d: CHLORIDE ION (CLd)
2e: CHLORIDE ION (CLe)
2f: CHLORIDE ION (CLf)
2g: CHLORIDE ION (CLg)
2h: CHLORIDE ION (CLh)
3a: ETHANOL (EOHa)
3b: ETHANOL (EOHb)
3c: ETHANOL (EOHc)
4a: MAGNESIUM ION (MGa)
4b: MAGNESIUM ION (MGb)
4c: MAGNESIUM ION (MGc)
4d: MAGNESIUM ION (MGd)
4e: MAGNESIUM ION (MGe)
4f: MAGNESIUM ION (MGf)
4g: MAGNESIUM ION (MGg)
4h: MAGNESIUM ION (MGh)
4i: MAGNESIUM ION (MGi)
5a: NADPH DIHYDRO-NICOTINAMIDE-ADENINE... (NDPa)
5b: NADPH DIHYDRO-NICOTINAMIDE-ADENINE... (NDPb)
6a: AMMONIUM ION (NH4a)
7a: STRONTIUM ION (SRa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
25U
2
Ligand/Ion
6-ETHYL-5-{3-[3-(PYRIMIDIN-5-YL)PHENYL]PROP-1-YN-1-YL}PYRIMIDINE-2,4-DIAMINE
2
CL
8
Ligand/Ion
CHLORIDE ION
3
EOH
3
Ligand/Ion
ETHANOL
4
MG
9
Ligand/Ion
MAGNESIUM ION
5
NDP
2
Ligand/Ion
NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDEPHOSPHATE
6
NH4
1
Ligand/Ion
AMMONIUM ION
7
SR
1
Ligand/Ion
STRONTIUM ION
[
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Sites
(24, 24)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ILE A:7 , VAL A:8 , ALA A:9 , GLU A:30 , PHE A:34 , THR A:56 , ILE A:60 , PRO A:61 , LEU A:67 , TYR A:121 , THR A:136 , NDP A:210 , HOH A:325
BINDING SITE FOR RESIDUE 25U A 201
02
AC2
SOFTWARE
VAL A:10 , SER A:11 , GLN A:12 , MET A:14 , ARG A:137 , HOH A:481
BINDING SITE FOR RESIDUE EOH A 202
03
AC3
SOFTWARE
MG A:209 , HOH A:461 , HOH A:464
BINDING SITE FOR RESIDUE CL A 203
04
AC4
SOFTWARE
GLU A:171 , LYS A:173 , GLY A:174
BINDING SITE FOR RESIDUE CL A 204
05
AC5
SOFTWARE
PRO A:160 , SER A:167 , HOH A:425
BINDING SITE FOR RESIDUE MG A 205
06
AC6
SOFTWARE
SER A:42 , VAL A:43 , HOH A:469 , MET B:139
BINDING SITE FOR RESIDUE CL A 206
07
AC7
SOFTWARE
GLN A:35 , ARG A:70
BINDING SITE FOR RESIDUE CL A 207
08
AC8
SOFTWARE
ASN A:29 , ARG A:32 , HOH A:318
BINDING SITE FOR RESIDUE CL A 208
09
AC9
SOFTWARE
ASP A:168 , GLN A:170 , CL A:203
BINDING SITE FOR RESIDUE MG A 209
10
BC1
SOFTWARE
VAL A:8 , ALA A:9 , ILE A:16 , GLY A:20 , ASP A:21 , GLY A:53 , LYS A:54 , LYS A:55 , THR A:56 , LEU A:75 , SER A:76 , ARG A:77 , GLU A:78 , ARG A:91 , VAL A:115 , GLY A:117 , SER A:118 , SER A:119 , VAL A:120 , TYR A:121 , GLU A:123 , THR A:146 , 25U A:201 , HOH A:307 , HOH A:322 , HOH A:327 , HOH A:350 , HOH A:403 , HOH A:440
BINDING SITE FOR RESIDUE NDP A 210
11
BC2
SOFTWARE
ASP A:168 , VAL A:169 , HOH A:450
BINDING SITE FOR RESIDUE MG A 211
12
BC3
SOFTWARE
GLU A:171 , GLY A:174 , VAL B:1 , GLY B:2 , SER B:3 , CL B:205
BINDING SITE FOR RESIDUE SR B 201
13
BC4
SOFTWARE
ILE B:7 , VAL B:8 , ALA B:9 , LEU B:22 , GLU B:30 , PHE B:31 , PHE B:34 , THR B:56 , ILE B:60 , PRO B:61 , LEU B:67 , VAL B:115 , TYR B:121 , THR B:136 , NDP B:214 , HOH B:327 , HOH B:358
BINDING SITE FOR RESIDUE 25U B 202
14
BC5
SOFTWARE
ASN A:185 , LYS B:173 , HOH B:456
BINDING SITE FOR RESIDUE EOH B 203
15
BC6
SOFTWARE
GLU B:62
BINDING SITE FOR RESIDUE EOH B 204
16
BC7
SOFTWARE
SER B:3 , ASN B:5 , SR B:201 , HOH B:308
BINDING SITE FOR RESIDUE CL B 205
17
BC8
SOFTWARE
ASP B:21 , NH4 B:211
BINDING SITE FOR RESIDUE MG B 206
18
BC9
SOFTWARE
PRO B:163
BINDING SITE FOR RESIDUE CL B 207
19
CC1
SOFTWARE
GLN B:35 , HOH B:346 , HOH B:366
BINDING SITE FOR RESIDUE CL B 208
20
CC2
SOFTWARE
GLN A:140 , ASP B:110
BINDING SITE FOR RESIDUE MG B 210
21
CC3
SOFTWARE
LEU B:22 , TRP B:24 , MG B:206
BINDING SITE FOR RESIDUE NH4 B 211
22
CC4
SOFTWARE
LYS B:18 , ASN B:19 , GLY B:20 , ASP B:145 , THR B:146 , NDP B:214 , HOH B:413
BINDING SITE FOR RESIDUE MG B 212
23
CC5
SOFTWARE
LEU B:153 , TYR B:156 , HOH B:336 , HOH B:445
BINDING SITE FOR RESIDUE MG B 213
24
CC6
SOFTWARE
VAL B:8 , ALA B:9 , ILE B:16 , GLY B:20 , ASP B:21 , GLY B:53 , LYS B:54 , LYS B:55 , THR B:56 , LEU B:75 , SER B:76 , ARG B:77 , GLU B:78 , ARG B:91 , VAL B:115 , GLY B:117 , SER B:118 , SER B:119 , VAL B:120 , TYR B:121 , GLU B:123 , THR B:146 , 25U B:202 , MG B:212 , HOH B:317 , HOH B:355 , HOH B:378 , HOH B:381 , HOH B:413
BINDING SITE FOR RESIDUE NDP B 214
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
Info
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Exons
(0, 0)
Info
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d4kbna_ (A:)
1b: SCOP_d4kbnb_ (B:)
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Protein Domains
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Organisms
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(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Dihydrofolate reductase-like
(332)
Superfamily
:
Dihydrofolate reductase-like
(332)
Family
:
Dihydrofolate reductases
(249)
Protein domain
:
Dihydrofolate reductases, eukaryotic type
(120)
Human (Homo sapiens) [TaxId: 9606]
(61)
1a
d4kbna_
A:
1b
d4kbnb_
B:
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CATH Domains
(0, 0)
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Sorry, no Info available
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Pfam Domains
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Sorry, no Info available
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Asymmetric Unit 1
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Asym.Unit (84 KB)
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