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4K79
Asym. Unit
Info
Asym.Unit (146 KB)
Biol.Unit 1 (140 KB)
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(1)
Title
:
RECOGNITION OF THE THOMSEN-FRIEDENREICH ANTIGEN BY A LAMPREY VARIABLE LYMPHOCYTE RECEPTOR
Authors
:
M. Luo, C. A. Velikovsky, X. B. Yang, R. A. Mariuzza
Date
:
16 Apr 13 (Deposition) - 26 Jun 13 (Release) - 28 Aug 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.20
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Leucine Rich Repeat, Antigen Receptor, Thomsen-Friedenreich Antigen, Immune System
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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)
Reference
:
M. Luo, C. A. Velikovsky, X. Yang, M. A. Siddiqui, X. Hong, J. J. Barchi, J. C. Gildersleeve, Z. Pancer, R. A. Mariuzza
Recognition Of The Thomsen-Friedenreich Pancarcinoma Carbohydrate Antigen By A Lamprey Variable Lymphocyte Receptor.
J. Biol. Chem. V. 288 23597 2013
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Hetero Components
(2, 6)
Info
All Hetero Components
1a: N-ACETYL-2-DEOXY-2-AMINO-GALACTOSE (A2Ga)
1b: N-ACETYL-2-DEOXY-2-AMINO-GALACTOSE (A2Gb)
1c: N-ACETYL-2-DEOXY-2-AMINO-GALACTOSE (A2Gc)
2a: BETA-D-GALACTOSE (GALa)
2b: BETA-D-GALACTOSE (GALb)
2c: BETA-D-GALACTOSE (GALc)
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No.
Name
Count
Type
Full Name
1
A2G
3
Ligand/Ion
N-ACETYL-2-DEOXY-2-AMINO-GALACTOSE
2
GAL
3
Ligand/Ion
BETA-D-GALACTOSE
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Sites
(6, 6)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASN B:86 , GLY B:108 , CYS B:110 , GLY B:132 , ASP B:134 , TRP B:156 , A2G B:302 , HOH B:447
BINDING SITE FOR RESIDUE GAL B 301
2
AC2
SOFTWARE
TRP B:62 , TRP B:84 , ASN B:86 , SER B:87 , GAL B:301
BINDING SITE FOR RESIDUE A2G B 302
3
AC3
SOFTWARE
TRP C:84 , ASN C:86 , GLY C:108 , CYS C:110 , GLY C:132 , ASP C:134 , TRP C:156 , A2G C:302 , HOH C:422
BINDING SITE FOR RESIDUE GAL C 301
4
AC4
SOFTWARE
TRP C:62 , TRP C:84 , ASN C:86 , SER C:87 , GAL C:301
BINDING SITE FOR RESIDUE A2G C 302
5
AC5
SOFTWARE
ASN D:86 , GLY D:108 , CYS D:110 , GLY D:132 , ASP D:134 , TRP D:156 , A2G D:302 , HOH D:450 , HOH D:466
BINDING SITE FOR RESIDUE GAL D 301
6
AC6
SOFTWARE
HIS D:60 , TRP D:62 , TRP D:84 , ASN D:86 , SER D:87 , GAL D:301
BINDING SITE FOR RESIDUE A2G D 302
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SAPs(SNPs)/Variants
(0, 0)
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PROSITE Patterns/Profiles
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Exons
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Pfam Domains
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Asymmetric Unit 1
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select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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show SS bonds with a radius of 100 units (=0.4Å)
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Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
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Asym.Unit (146 KB)
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