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4K6T
Asym. Unit
Info
Asym.Unit (394 KB)
Biol.Unit 1 (195 KB)
Biol.Unit 2 (195 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF AD37 FIBER KNOB IN COMPLEX WITH TRIVALENT SIALIC ACID INHIBITOR ME0385
Authors
:
T. Stehle, J. Bauer
Date
:
16 Apr 13 (Deposition) - 22 Oct 14 (Release) - 09 Sep 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A,B,C,E,F,G
Biol. Unit 1: A,B,C (1x)
Biol. Unit 2: E,F,G (1x)
Keywords
:
Adenovirus, Fiber Knob, Protein Carbohydrate Interaction, Sialic Acid, Carbohydrate Mimic, Multivalent Ligand, Viral Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
R. Caraballo, M. Saleeb, J. Bauer, A. M. Liaci, N. Chandra, R. J. Storm, L. Frangsmyr, W. Qian, T. Stehle, N. Arnberg, M. Elofsson
Triazole Linker-Based Trivalent Sialic Acid Inhibitors Of Adenovirus Type 37 Infection Of Human Corneal Epithelial Cells.
Org. Biomol. Chem. V. 13 9194 2015
[
close entry info
]
Hetero Components
(9, 54)
Info
All Hetero Components
1a: 2,2',2''-[NITRILOTRIS(METHANEDIYL-... (1P0a)
2a: ACETATE ION (ACTa)
2b: ACETATE ION (ACTb)
2c: ACETATE ION (ACTc)
2d: ACETATE ION (ACTd)
2e: ACETATE ION (ACTe)
2f: ACETATE ION (ACTf)
2g: ACETATE ION (ACTg)
2h: ACETATE ION (ACTh)
2i: ACETATE ION (ACTi)
3a: CALCIUM ION (CAa)
4a: CHLORIDE ION (CLa)
5a: 1,2-ETHANEDIOL (EDOa)
5b: 1,2-ETHANEDIOL (EDOb)
5c: 1,2-ETHANEDIOL (EDOc)
5d: 1,2-ETHANEDIOL (EDOd)
5e: 1,2-ETHANEDIOL (EDOe)
5f: 1,2-ETHANEDIOL (EDOf)
5g: 1,2-ETHANEDIOL (EDOg)
5h: 1,2-ETHANEDIOL (EDOh)
5i: 1,2-ETHANEDIOL (EDOi)
5j: 1,2-ETHANEDIOL (EDOj)
5k: 1,2-ETHANEDIOL (EDOk)
5l: 1,2-ETHANEDIOL (EDOl)
5m: 1,2-ETHANEDIOL (EDOm)
6a: GLYCEROL (GOLa)
6b: GLYCEROL (GOLb)
6c: GLYCEROL (GOLc)
7a: MAGNESIUM ION (MGa)
7b: MAGNESIUM ION (MGb)
7c: MAGNESIUM ION (MGc)
7d: MAGNESIUM ION (MGd)
7e: MAGNESIUM ION (MGe)
7f: MAGNESIUM ION (MGf)
8a: O-SIALIC ACID (SIAa)
8b: O-SIALIC ACID (SIAb)
8c: O-SIALIC ACID (SIAc)
8d: O-SIALIC ACID (SIAd)
8e: O-SIALIC ACID (SIAe)
8f: O-SIALIC ACID (SIAf)
9a: ZINC ION (ZNa)
9b: ZINC ION (ZNb)
9c: ZINC ION (ZNc)
9d: ZINC ION (ZNd)
9e: ZINC ION (ZNe)
9f: ZINC ION (ZNf)
9g: ZINC ION (ZNg)
9h: ZINC ION (ZNh)
9i: ZINC ION (ZNi)
9j: ZINC ION (ZNj)
9k: ZINC ION (ZNk)
9l: ZINC ION (ZNl)
9m: ZINC ION (ZNm)
9n: ZINC ION (ZNn)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
1P0
1
Ligand/Ion
2,2',2''-[NITRILOTRIS(METHANEDIYL-1H-1,2,3-TRIAZOLE-4,1-DIYL)]TRIETHANOL
2
ACT
9
Ligand/Ion
ACETATE ION
3
CA
1
Ligand/Ion
CALCIUM ION
4
CL
1
Ligand/Ion
CHLORIDE ION
5
EDO
13
Ligand/Ion
1,2-ETHANEDIOL
6
GOL
3
Ligand/Ion
GLYCEROL
7
MG
6
Ligand/Ion
MAGNESIUM ION
8
SIA
6
Ligand/Ion
O-SIALIC ACID
9
ZN
14
Ligand/Ion
ZINC ION
[
close Hetero Component info
]
Sites
(54, 54)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
34: DC7 (SOFTWARE)
35: DC8 (SOFTWARE)
36: DC9 (SOFTWARE)
37: EC1 (SOFTWARE)
38: EC2 (SOFTWARE)
39: EC3 (SOFTWARE)
40: EC4 (SOFTWARE)
41: EC5 (SOFTWARE)
42: EC6 (SOFTWARE)
43: EC7 (SOFTWARE)
44: EC8 (SOFTWARE)
45: EC9 (SOFTWARE)
46: FC1 (SOFTWARE)
47: FC2 (SOFTWARE)
48: FC3 (SOFTWARE)
49: FC4 (SOFTWARE)
50: FC5 (SOFTWARE)
51: FC6 (SOFTWARE)
52: FC7 (SOFTWARE)
53: FC8 (SOFTWARE)
54: FC9 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
TYR A:312 , PRO A:317 , ASP A:318 , LYS A:345 , HOH A:572 , HOH A:605 , HOH A:606 , HOH A:643 , TYR B:308 , VAL B:322 , 1P0 B:402 , EDO B:410
BINDING SITE FOR RESIDUE SIA A 401
02
AC2
SOFTWARE
GLU A:351 , ACT A:405 , ACT B:406
BINDING SITE FOR RESIDUE ZN A 402
03
AC3
SOFTWARE
HIS A:231 , ACT A:405 , ACT A:406
BINDING SITE FOR RESIDUE ZN A 403
04
AC4
SOFTWARE
ASP A:318
BINDING SITE FOR RESIDUE ZN A 404
05
AC5
SOFTWARE
HIS A:231 , GLU A:351 , ZN A:402 , ZN A:403 , ACT A:406 , ACT B:406
BINDING SITE FOR RESIDUE ACT A 405
06
AC6
SOFTWARE
HIS A:231 , ZN A:403 , ACT A:405 , HOH A:639
BINDING SITE FOR RESIDUE ACT A 406
07
AC7
SOFTWARE
LYS A:282 , ALA A:283 , ILE A:284 , GLY A:285
BINDING SITE FOR RESIDUE EDO A 407
08
AC8
SOFTWARE
LYS A:212 , GLY A:214 , GLU A:365
BINDING SITE FOR RESIDUE EDO A 408
09
AC9
SOFTWARE
ALA A:265
BINDING SITE FOR RESIDUE CL A 409
10
BC1
SOFTWARE
TYR B:312 , PRO B:317 , ASP B:318 , LYS B:345 , 1P0 B:402 , HOH B:575 , HOH B:607 , HOH B:639 , TYR C:308 , VAL C:322 , HOH C:602
BINDING SITE FOR RESIDUE SIA B 401
11
BC2
SOFTWARE
SIA A:401 , SIA B:401 , SIA C:401
BINDING SITE FOR RESIDUE 1P0 B 402
12
BC3
SOFTWARE
HIS B:231 , GLU B:351 , ACT B:407 , HOH B:600
BINDING SITE FOR RESIDUE ZN B 403
13
BC4
SOFTWARE
ASP B:258 , SER F:299
BINDING SITE FOR RESIDUE ZN B 404
14
BC5
SOFTWARE
ASP B:318
BINDING SITE FOR RESIDUE ZN B 405
15
BC6
SOFTWARE
GLU A:351 , ZN A:402 , ACT A:405 , LYS B:300 , LYS B:301 , TYR B:302
BINDING SITE FOR RESIDUE ACT B 406
16
BC7
SOFTWARE
HIS B:231 , GLU B:351 , ZN B:403 , GLU E:281
BINDING SITE FOR RESIDUE ACT B 407
17
BC8
SOFTWARE
ASN B:195 , THR B:197 , ASN B:261 , GLY B:263
BINDING SITE FOR RESIDUE EDO B 408
18
BC9
SOFTWARE
LYS B:282 , ILE B:284 , GLY B:285 , HOH B:628
BINDING SITE FOR RESIDUE EDO B 409
19
CC1
SOFTWARE
SIA A:401 , PRO B:320 , VAL B:322 , SER B:344 , HOH B:508 , HOH B:605 , HOH B:638
BINDING SITE FOR RESIDUE EDO B 410
20
CC2
SOFTWARE
LYS B:212 , GLU B:365 , HOH B:640
BINDING SITE FOR RESIDUE MG B 411
21
CC3
SOFTWARE
TYR A:308 , VAL A:322 , SER A:344 , HOH A:595 , HOH A:599 , HOH A:641 , 1P0 B:402 , TYR C:312 , PRO C:317 , ASP C:318 , LYS C:345 , HOH C:607 , HOH C:611 , HOH C:624
BINDING SITE FOR RESIDUE SIA C 401
22
CC4
SOFTWARE
HIS C:231 , GLU C:351 , HOH C:561 , HOH C:562
BINDING SITE FOR RESIDUE ZN C 402
23
CC5
SOFTWARE
GLY C:228 , HIS C:231 , HOH C:626
BINDING SITE FOR RESIDUE EDO C 403
24
CC6
SOFTWARE
ASP C:318 , HOH C:631
BINDING SITE FOR RESIDUE MG C 404
25
CC7
SOFTWARE
HOH B:626 , LYS C:212 , GLY C:214 , GLU C:365
BINDING SITE FOR RESIDUE MG C 405
26
CC8
SOFTWARE
HIS E:231 , GLU E:351 , HOH E:588 , ACT F:404 , HOH F:602
BINDING SITE FOR RESIDUE ZN E 401
27
CC9
SOFTWARE
ASP E:318
BINDING SITE FOR RESIDUE ZN E 402
28
DC1
SOFTWARE
TYR E:312 , PRO E:317 , ASP E:318 , LYS E:345 , HOH E:531 , TYR F:308 , VAL F:322 , SER F:344 , HOH F:526
BINDING SITE FOR RESIDUE SIA E 403
29
DC2
SOFTWARE
GLU E:348 , ACT E:406
BINDING SITE FOR RESIDUE ACT E 404
30
DC3
SOFTWARE
LYS E:236 , ACT E:406
BINDING SITE FOR RESIDUE ACT E 405
31
DC4
SOFTWARE
LYS E:236 , GLU E:348 , ACT E:404 , ACT E:405
BINDING SITE FOR RESIDUE ACT E 406
32
DC5
SOFTWARE
LYS E:282 , ILE E:284 , GLY E:285
BINDING SITE FOR RESIDUE EDO E 407
33
DC6
SOFTWARE
LYS E:301 , LYS E:324 , THR E:326 , HOH E:613
BINDING SITE FOR RESIDUE EDO E 408
34
DC7
SOFTWARE
SER E:260 , HOH E:581
BINDING SITE FOR RESIDUE EDO E 409
35
DC8
SOFTWARE
GLU E:334 , GOL E:411
BINDING SITE FOR RESIDUE EDO E 410
36
DC9
SOFTWARE
GLY E:332 , CYS E:333 , EDO E:410
BINDING SITE FOR RESIDUE GOL E 411
37
EC1
SOFTWARE
LYS E:212 , GLU E:365 , HOH E:626 , HOH E:627
BINDING SITE FOR RESIDUE MG E 412
38
EC2
SOFTWARE
HIS F:231 , GLU F:351 , HOH F:621
BINDING SITE FOR RESIDUE ZN F 401
39
EC3
SOFTWARE
ASP F:318 , HOH F:627
BINDING SITE FOR RESIDUE ZN F 402
40
EC4
SOFTWARE
TYR F:312 , PRO F:317 , ASP F:318 , LYS F:345 , HOH F:573 , HOH F:606 , HOH F:618 , TYR G:308 , VAL G:322 , HOH G:638
BINDING SITE FOR RESIDUE SIA F 403
41
EC5
SOFTWARE
HIS E:231 , GLU E:351 , ZN E:401 , HOH E:588 , HOH E:594 , LYS F:300 , TYR F:302 , HOH F:602
BINDING SITE FOR RESIDUE ACT F 404
42
EC6
SOFTWARE
GLY F:228 , HIS F:231
BINDING SITE FOR RESIDUE EDO F 405
43
EC7
SOFTWARE
ILE F:284 , GLY F:285
BINDING SITE FOR RESIDUE EDO F 406
44
EC8
SOFTWARE
ASN F:195 , LYS F:202 , GLY F:263 , TYR F:266 , TRP F:267 , HOH F:537
BINDING SITE FOR RESIDUE EDO F 407
45
EC9
SOFTWARE
ASP F:201 , LYS F:202
BINDING SITE FOR RESIDUE MG F 408
46
FC1
SOFTWARE
LYS F:212 , GLU F:365 , HOH F:625
BINDING SITE FOR RESIDUE MG F 409
47
FC2
SOFTWARE
HIS G:231
BINDING SITE FOR RESIDUE ZN G 401
48
FC3
SOFTWARE
GLU G:351
BINDING SITE FOR RESIDUE ZN G 402
49
FC4
SOFTWARE
ASP G:318
BINDING SITE FOR RESIDUE ZN G 403
50
FC5
SOFTWARE
VAL E:322 , HOH E:610 , TYR G:312 , PRO G:317 , ASP G:318 , LYS G:345 , HOH G:633
BINDING SITE FOR RESIDUE SIA G 404
51
FC6
SOFTWARE
ASP F:182 , ARG F:270 , LYS G:212 , GLY G:214 , GLU G:365 , CA G:408
BINDING SITE FOR RESIDUE ACT G 405
52
FC7
SOFTWARE
GLN G:319 , ASN G:349 , GLU G:351 , HOH G:584 , HOH G:640
BINDING SITE FOR RESIDUE GOL G 406
53
FC8
SOFTWARE
ALA G:283 , ILE G:284 , GLY G:285 , HOH G:594
BINDING SITE FOR RESIDUE GOL G 407
54
FC9
SOFTWARE
LYS G:212 , GLU G:365 , ACT G:405
BINDING SITE FOR RESIDUE CA G 408
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
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Label:
End label:
Sorry, no Info available
[
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]
Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
Info
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Sorry, no Info available
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
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all PFAM domains
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Sorry, no Info available
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select residue range 5 to 10 in chain 'A'
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Asym.Unit (394 KB)
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