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4K6M
Biol. Unit 2
Info
Asym.Unit (306 KB)
Biol.Unit 1 (153 KB)
Biol.Unit 2 (152 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE FULL-LENGTH JAPANESE ENCEPHALITIS VIRUS NS5
Authors
:
G. Lu, P. Gong
Date
:
16 Apr 13 (Deposition) - 28 Aug 13 (Release) - 22 Jan 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.60
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Methyltransferase, Rna-Dependent Rna Polymerase, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
G. Lu, P. Gong
Crystal Structure Of The Full-Length Japanese Encephalitis Virus Ns5 Reveals A Conserved Methyltransferase-Polymerase Interface
Plos Pathog. V. 9 03549 2013
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Hetero Components
(2, 9)
Info
All Hetero Components
1a: S-ADENOSYL-L-HOMOCYSTEINE (SAHa)
1b: S-ADENOSYL-L-HOMOCYSTEINE (SAHb)
2a: SULFATE ION (SO4a)
2b: SULFATE ION (SO4b)
2c: SULFATE ION (SO4c)
2d: SULFATE ION (SO4d)
2e: SULFATE ION (SO4e)
2f: SULFATE ION (SO4f)
2g: SULFATE ION (SO4g)
2h: SULFATE ION (SO4h)
2i: SULFATE ION (SO4i)
2j: SULFATE ION (SO4j)
2k: SULFATE ION (SO4k)
2l: SULFATE ION (SO4l)
2m: SULFATE ION (SO4m)
2n: SULFATE ION (SO4n)
2o: SULFATE ION (SO4o)
2p: SULFATE ION (SO4p)
2q: SULFATE ION (SO4q)
2r: SULFATE ION (SO4r)
3a: ZINC ION (ZNa)
3b: ZINC ION (ZNb)
3c: ZINC ION (ZNc)
3d: ZINC ION (ZNd)
View:
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Label:
No.
Name
Count
Type
Full Name
1
SAH
1
Ligand/Ion
S-ADENOSYL-L-HOMOCYSTEINE
2
SO4
8
Ligand/Ion
SULFATE ION
3
ZN
-1
Ligand/Ion
ZINC ION
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Sites
(14, 14)
Info
All Sites
01: AC2 (SOFTWARE)
02: AC3 (SOFTWARE)
03: BC1 (SOFTWARE)
04: BC5 (SOFTWARE)
05: BC6 (SOFTWARE)
06: BC7 (SOFTWARE)
07: BC8 (SOFTWARE)
08: BC9 (SOFTWARE)
09: CC1 (SOFTWARE)
10: CC2 (SOFTWARE)
11: CC3 (SOFTWARE)
12: CC4 (SOFTWARE)
13: CC5 (SOFTWARE)
14: CC6 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
01
AC2
SOFTWARE
ARG A:41 , ARG A:45 , HOH A:1116 , HOH A:1192 , THR B:38 , ARG B:41 , HOH B:1219
BINDING SITE FOR RESIDUE SO4 A 1002
02
AC3
SOFTWARE
ARG A:28 , ARG A:41 , ARG A:57 , ARG A:213 , ARG B:45
BINDING SITE FOR RESIDUE SO4 A 1003
03
BC1
SOFTWARE
GLY A:561 , ARG A:564 , GLN B:635 , HIS B:636 , LYS B:643
BINDING SITE FOR RESIDUE SO4 A 1010
04
BC5
SOFTWARE
SER B:56 , GLY B:58 , GLY B:81 , CYS B:82 , GLY B:85 , GLY B:86 , TRP B:87 , THR B:104 , LYS B:105 , HIS B:110 , VAL B:130 , ASP B:131 , VAL B:132 , PHE B:133 , ASP B:146 , ILE B:147 , SO4 B:1009 , HOH B:1125 , HOH B:1162 , HOH B:1252
BINDING SITE FOR RESIDUE SAH B 1001
05
BC6
SOFTWARE
ARG A:42 , ARG A:45 , ARG B:28 , ARG B:41 , ARG B:57 , ARG B:213
BINDING SITE FOR RESIDUE SO4 B 1002
06
BC7
SOFTWARE
ARG B:37 , ARG B:41 , ARG B:84 , HOH B:1215
BINDING SITE FOR RESIDUE SO4 B 1003
07
BC8
SOFTWARE
ALA B:31 , ARG B:243 , ARG B:246
BINDING SITE FOR RESIDUE SO4 B 1004
08
BC9
SOFTWARE
ARG B:28 , SER B:215 , ASN B:216
BINDING SITE FOR RESIDUE SO4 B 1005
09
CC1
SOFTWARE
ALA B:410 , LEU B:411 , GLY B:412
BINDING SITE FOR RESIDUE SO4 B 1006
10
CC2
SOFTWARE
ARG B:734 , SER B:799 , TRP B:800 , SER B:801
BINDING SITE FOR RESIDUE SO4 B 1007
11
CC3
SOFTWARE
ARG B:474 , GLY B:539 , LYS B:694
BINDING SITE FOR RESIDUE SO4 B 1008
12
CC4
SOFTWARE
GLY B:109 , HIS B:110 , GLU B:111 , SAH B:1001
BINDING SITE FOR RESIDUE SO4 B 1009
13
CC5
SOFTWARE
HIS B:717 , CYS B:733 , GLU B:848 , CYS B:852
BINDING SITE FOR RESIDUE ZN B 1010
14
CC6
SOFTWARE
GLU B:440 , HIS B:444 , CYS B:449 , CYS B:452
BINDING SITE FOR RESIDUE ZN B 1011
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
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SCOP Domains
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CATH Domains
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Pfam Domains
(0, 0)
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Chain B
Asymmetric Unit 1
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Show PDB file:
Asym.Unit (306 KB)
Header - Asym.Unit
Biol.Unit 1 (153 KB)
Header - Biol.Unit 1
Biol.Unit 2 (152 KB)
Header - Biol.Unit 2
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