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Getting 'Biological Unit' information from database.
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Getting 'Exon' information from database.
4K6M
Asym. Unit
Info
Asym.Unit (306 KB)
Biol.Unit 1 (153 KB)
Biol.Unit 2 (152 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE FULL-LENGTH JAPANESE ENCEPHALITIS VIRUS NS5
Authors
:
G. Lu, P. Gong
Date
:
16 Apr 13 (Deposition) - 28 Aug 13 (Release) - 22 Jan 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.60
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Methyltransferase, Rna-Dependent Rna Polymerase, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
G. Lu, P. Gong
Crystal Structure Of The Full-Length Japanese Encephalitis Virus Ns5 Reveals A Conserved Methyltransferase-Polymerase Interface
Plos Pathog. V. 9 03549 2013
[
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Hetero Components
(3, 24)
Info
All Hetero Components
1a: S-ADENOSYL-L-HOMOCYSTEINE (SAHa)
1b: S-ADENOSYL-L-HOMOCYSTEINE (SAHb)
2a: SULFATE ION (SO4a)
2b: SULFATE ION (SO4b)
2c: SULFATE ION (SO4c)
2d: SULFATE ION (SO4d)
2e: SULFATE ION (SO4e)
2f: SULFATE ION (SO4f)
2g: SULFATE ION (SO4g)
2h: SULFATE ION (SO4h)
2i: SULFATE ION (SO4i)
2j: SULFATE ION (SO4j)
2k: SULFATE ION (SO4k)
2l: SULFATE ION (SO4l)
2m: SULFATE ION (SO4m)
2n: SULFATE ION (SO4n)
2o: SULFATE ION (SO4o)
2p: SULFATE ION (SO4p)
2q: SULFATE ION (SO4q)
2r: SULFATE ION (SO4r)
3a: ZINC ION (ZNa)
3b: ZINC ION (ZNb)
3c: ZINC ION (ZNc)
3d: ZINC ION (ZNd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
SAH
2
Ligand/Ion
S-ADENOSYL-L-HOMOCYSTEINE
2
SO4
18
Ligand/Ion
SULFATE ION
3
ZN
4
Ligand/Ion
ZINC ION
[
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Sites
(24, 24)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
SER A:56 , GLY A:58 , GLY A:81 , CYS A:82 , GLY A:85 , GLY A:86 , TRP A:87 , THR A:104 , LYS A:105 , HIS A:110 , VAL A:130 , ASP A:131 , VAL A:132 , PHE A:133 , ASP A:146 , SO4 A:1011 , HOH A:1145 , HOH A:1209
BINDING SITE FOR RESIDUE SAH A 1001
02
AC2
SOFTWARE
ARG A:41 , ARG A:45 , HOH A:1116 , HOH A:1192 , THR B:38 , ARG B:41 , HOH B:1219
BINDING SITE FOR RESIDUE SO4 A 1002
03
AC3
SOFTWARE
ARG A:28 , ARG A:41 , ARG A:57 , ARG A:213 , ARG B:45
BINDING SITE FOR RESIDUE SO4 A 1003
04
AC4
SOFTWARE
ARG A:37 , ARG A:41 , ARG A:44 , ARG A:84 , HOH A:1142
BINDING SITE FOR RESIDUE SO4 A 1004
05
AC5
SOFTWARE
ALA A:31 , ARG A:243 , ARG A:246
BINDING SITE FOR RESIDUE SO4 A 1005
06
AC6
SOFTWARE
ARG A:28 , SER A:215 , ASN A:216
BINDING SITE FOR RESIDUE SO4 A 1006
07
AC7
SOFTWARE
ALA A:410 , LEU A:411 , GLY A:412 , HOH A:1153
BINDING SITE FOR RESIDUE SO4 A 1007
08
AC8
SOFTWARE
ARG A:734 , ARG A:742 , SER A:799 , TRP A:800 , SER A:801
BINDING SITE FOR RESIDUE SO4 A 1008
09
AC9
SOFTWARE
ARG A:474 , GLY A:539 , LYS A:694
BINDING SITE FOR RESIDUE SO4 A 1009
10
BC1
SOFTWARE
GLY A:561 , ARG A:564 , GLN B:635 , HIS B:636 , LYS B:643
BINDING SITE FOR RESIDUE SO4 A 1010
11
BC2
SOFTWARE
GLY A:109 , HIS A:110 , GLU A:111 , SAH A:1001
BINDING SITE FOR RESIDUE SO4 A 1011
12
BC3
SOFTWARE
GLU A:440 , HIS A:444 , CYS A:449 , CYS A:452
BINDING SITE FOR RESIDUE ZN A 1012
13
BC4
SOFTWARE
HIS A:717 , CYS A:733 , GLU A:848 , CYS A:852
BINDING SITE FOR RESIDUE ZN A 1013
14
BC5
SOFTWARE
SER B:56 , GLY B:58 , GLY B:81 , CYS B:82 , GLY B:85 , GLY B:86 , TRP B:87 , THR B:104 , LYS B:105 , HIS B:110 , VAL B:130 , ASP B:131 , VAL B:132 , PHE B:133 , ASP B:146 , ILE B:147 , SO4 B:1009 , HOH B:1125 , HOH B:1162 , HOH B:1252
BINDING SITE FOR RESIDUE SAH B 1001
15
BC6
SOFTWARE
ARG A:42 , ARG A:45 , ARG B:28 , ARG B:41 , ARG B:57 , ARG B:213
BINDING SITE FOR RESIDUE SO4 B 1002
16
BC7
SOFTWARE
ARG B:37 , ARG B:41 , ARG B:84 , HOH B:1215
BINDING SITE FOR RESIDUE SO4 B 1003
17
BC8
SOFTWARE
ALA B:31 , ARG B:243 , ARG B:246
BINDING SITE FOR RESIDUE SO4 B 1004
18
BC9
SOFTWARE
ARG B:28 , SER B:215 , ASN B:216
BINDING SITE FOR RESIDUE SO4 B 1005
19
CC1
SOFTWARE
ALA B:410 , LEU B:411 , GLY B:412
BINDING SITE FOR RESIDUE SO4 B 1006
20
CC2
SOFTWARE
ARG B:734 , SER B:799 , TRP B:800 , SER B:801
BINDING SITE FOR RESIDUE SO4 B 1007
21
CC3
SOFTWARE
ARG B:474 , GLY B:539 , LYS B:694
BINDING SITE FOR RESIDUE SO4 B 1008
22
CC4
SOFTWARE
GLY B:109 , HIS B:110 , GLU B:111 , SAH B:1001
BINDING SITE FOR RESIDUE SO4 B 1009
23
CC5
SOFTWARE
HIS B:717 , CYS B:733 , GLU B:848 , CYS B:852
BINDING SITE FOR RESIDUE ZN B 1010
24
CC6
SOFTWARE
GLU B:440 , HIS B:444 , CYS B:449 , CYS B:452
BINDING SITE FOR RESIDUE ZN B 1011
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
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;
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
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CATH Domains
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Pfam Domains
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Asymmetric Unit 1
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Example Command
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select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
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Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
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Show PDB file:
Asym.Unit (306 KB)
Header - Asym.Unit
Biol.Unit 1 (153 KB)
Header - Biol.Unit 1
Biol.Unit 2 (152 KB)
Header - Biol.Unit 2
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