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4K3N
Biol. Unit 1
Info
Asym.Unit (1.9 MB)
Biol.Unit 1 (949 KB)
Biol.Unit 2 (954 KB)
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(1)
Title
:
PHOSPHONIC ARGININE MIMETICS AS INHIBITORS OF THE M17 AMINOPEPTIDASES FROM PLASMODIUM FALCIPARUM
Authors
:
S. Mcgowan
Date
:
11 Apr 13 (Deposition) - 12 Jun 13 (Release) - 24 Jul 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L
Biol. Unit 1: A,B,C,D,E,F (1x)
Biol. Unit 2: G,H,I,J,K,L (1x)
Keywords
:
Aminopeptidase, Leucyl Aminopeptidase, Protease, Hydrolase-Hydrolase Inhibitor Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
K. Kannan Sivaraman, A. Paiardini, M. Sienczyk, C. Ruggeri, C. A. Oellig, J. P. Dalton, P. J. Scammells, M. Drag, S. Mcgowan
Synthesis And Structure-Activity Relationships Of Phosphoni Arginine Mimetics As Inhibitors Of The M1 And M17 Aminopeptidases From Plasmodium Falciparum.
J. Med. Chem. V. 56 5213 2013
[
close entry info
]
Hetero Components
(5, 46)
Info
All Hetero Components
1a: {(R)-AMINO[4-(1H-PYRAZOL-1-YL)PHEN... (1OTa)
1b: {(R)-AMINO[4-(1H-PYRAZOL-1-YL)PHEN... (1OTb)
1c: {(R)-AMINO[4-(1H-PYRAZOL-1-YL)PHEN... (1OTc)
1d: {(R)-AMINO[4-(1H-PYRAZOL-1-YL)PHEN... (1OTd)
1e: {(R)-AMINO[4-(1H-PYRAZOL-1-YL)PHEN... (1OTe)
1f: {(R)-AMINO[4-(1H-PYRAZOL-1-YL)PHEN... (1OTf)
1g: {(R)-AMINO[4-(1H-PYRAZOL-1-YL)PHEN... (1OTg)
1h: {(R)-AMINO[4-(1H-PYRAZOL-1-YL)PHEN... (1OTh)
1i: {(R)-AMINO[4-(1H-PYRAZOL-1-YL)PHEN... (1OTi)
1j: {(R)-AMINO[4-(1H-PYRAZOL-1-YL)PHEN... (1OTj)
1k: {(R)-AMINO[4-(1H-PYRAZOL-1-YL)PHEN... (1OTk)
1l: {(R)-AMINO[4-(1H-PYRAZOL-1-YL)PHEN... (1OTl)
2a: PENTAETHYLENE GLYCOL (1PEa)
2aa: PENTAETHYLENE GLYCOL (1PEaa)
2ab: PENTAETHYLENE GLYCOL (1PEab)
2ac: PENTAETHYLENE GLYCOL (1PEac)
2ad: PENTAETHYLENE GLYCOL (1PEad)
2ae: PENTAETHYLENE GLYCOL (1PEae)
2af: PENTAETHYLENE GLYCOL (1PEaf)
2ag: PENTAETHYLENE GLYCOL (1PEag)
2ah: PENTAETHYLENE GLYCOL (1PEah)
2b: PENTAETHYLENE GLYCOL (1PEb)
2c: PENTAETHYLENE GLYCOL (1PEc)
2d: PENTAETHYLENE GLYCOL (1PEd)
2e: PENTAETHYLENE GLYCOL (1PEe)
2f: PENTAETHYLENE GLYCOL (1PEf)
2g: PENTAETHYLENE GLYCOL (1PEg)
2h: PENTAETHYLENE GLYCOL (1PEh)
2i: PENTAETHYLENE GLYCOL (1PEi)
2j: PENTAETHYLENE GLYCOL (1PEj)
2k: PENTAETHYLENE GLYCOL (1PEk)
2l: PENTAETHYLENE GLYCOL (1PEl)
2m: PENTAETHYLENE GLYCOL (1PEm)
2n: PENTAETHYLENE GLYCOL (1PEn)
2o: PENTAETHYLENE GLYCOL (1PEo)
2p: PENTAETHYLENE GLYCOL (1PEp)
2q: PENTAETHYLENE GLYCOL (1PEq)
2r: PENTAETHYLENE GLYCOL (1PEr)
2s: PENTAETHYLENE GLYCOL (1PEs)
2t: PENTAETHYLENE GLYCOL (1PEt)
2u: PENTAETHYLENE GLYCOL (1PEu)
2v: PENTAETHYLENE GLYCOL (1PEv)
2w: PENTAETHYLENE GLYCOL (1PEw)
2x: PENTAETHYLENE GLYCOL (1PEx)
2y: PENTAETHYLENE GLYCOL (1PEy)
2z: PENTAETHYLENE GLYCOL (1PEz)
3a: NONAETHYLENE GLYCOL (2PEa)
3b: NONAETHYLENE GLYCOL (2PEb)
3c: NONAETHYLENE GLYCOL (2PEc)
3d: NONAETHYLENE GLYCOL (2PEd)
3e: NONAETHYLENE GLYCOL (2PEe)
3f: NONAETHYLENE GLYCOL (2PEf)
3g: NONAETHYLENE GLYCOL (2PEg)
3h: NONAETHYLENE GLYCOL (2PEh)
3i: NONAETHYLENE GLYCOL (2PEi)
3j: NONAETHYLENE GLYCOL (2PEj)
3k: NONAETHYLENE GLYCOL (2PEk)
3l: NONAETHYLENE GLYCOL (2PEl)
4a: CARBONATE ION (CO3a)
4b: CARBONATE ION (CO3b)
4c: CARBONATE ION (CO3c)
4d: CARBONATE ION (CO3d)
4e: CARBONATE ION (CO3e)
4f: CARBONATE ION (CO3f)
4g: CARBONATE ION (CO3g)
4h: CARBONATE ION (CO3h)
4i: CARBONATE ION (CO3i)
4j: CARBONATE ION (CO3j)
4k: CARBONATE ION (CO3k)
4l: CARBONATE ION (CO3l)
5a: SULFATE ION (SO4a)
5b: SULFATE ION (SO4b)
5c: SULFATE ION (SO4c)
5d: SULFATE ION (SO4d)
5e: SULFATE ION (SO4e)
5f: SULFATE ION (SO4f)
5g: SULFATE ION (SO4g)
5h: SULFATE ION (SO4h)
5i: SULFATE ION (SO4i)
5j: SULFATE ION (SO4j)
5k: SULFATE ION (SO4k)
5l: SULFATE ION (SO4l)
5m: SULFATE ION (SO4m)
5n: SULFATE ION (SO4n)
5o: SULFATE ION (SO4o)
5p: SULFATE ION (SO4p)
5q: SULFATE ION (SO4q)
5r: SULFATE ION (SO4r)
5s: SULFATE ION (SO4s)
5t: SULFATE ION (SO4t)
5u: SULFATE ION (SO4u)
6a: ZINC ION (ZNa)
6b: ZINC ION (ZNb)
6c: ZINC ION (ZNc)
6d: ZINC ION (ZNd)
6e: ZINC ION (ZNe)
6f: ZINC ION (ZNf)
6g: ZINC ION (ZNg)
6h: ZINC ION (ZNh)
6i: ZINC ION (ZNi)
6j: ZINC ION (ZNj)
6k: ZINC ION (ZNk)
6l: ZINC ION (ZNl)
6m: ZINC ION (ZNm)
6n: ZINC ION (ZNn)
6o: ZINC ION (ZNo)
6p: ZINC ION (ZNp)
6q: ZINC ION (ZNq)
6r: ZINC ION (ZNr)
6s: ZINC ION (ZNs)
6t: ZINC ION (ZNt)
6u: ZINC ION (ZNu)
6v: ZINC ION (ZNv)
6w: ZINC ION (ZNw)
6x: ZINC ION (ZNx)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
1OT
6
Ligand/Ion
{(R)-AMINO[4-(1H-PYRAZOL-1-YL)PHENYL]METHYL}PHOSPHONICACID
2
1PE
15
Ligand/Ion
PENTAETHYLENE GLYCOL
3
2PE
8
Ligand/Ion
NONAETHYLENE GLYCOL
4
CO3
6
Ligand/Ion
CARBONATE ION
5
SO4
11
Ligand/Ion
SULFATE ION
6
ZN
-1
Ligand/Ion
ZINC ION
[
close Hetero Component info
]
Sites
(62, 62)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
34: DC7 (SOFTWARE)
35: DC8 (SOFTWARE)
36: DC9 (SOFTWARE)
37: EC1 (SOFTWARE)
38: EC2 (SOFTWARE)
39: EC3 (SOFTWARE)
40: EC4 (SOFTWARE)
41: EC5 (SOFTWARE)
42: EC6 (SOFTWARE)
43: EC7 (SOFTWARE)
44: EC8 (SOFTWARE)
45: EC9 (SOFTWARE)
46: FC1 (SOFTWARE)
47: FC2 (SOFTWARE)
48: FC3 (SOFTWARE)
49: FC4 (SOFTWARE)
50: FC5 (SOFTWARE)
51: FC6 (SOFTWARE)
52: FC7 (SOFTWARE)
53: FC8 (SOFTWARE)
54: FC9 (SOFTWARE)
55: GC1 (SOFTWARE)
56: GC2 (SOFTWARE)
57: GC3 (SOFTWARE)
58: GC4 (SOFTWARE)
59: HC2 (SOFTWARE)
60: HC4 (SOFTWARE)
61: HC5 (SOFTWARE)
62: IC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
LYS A:374 , ASP A:379 , ASP A:399 , GLU A:461 , ZN A:1003 , 1OT A:1004
BINDING SITE FOR RESIDUE ZN A 1001
02
AC2
SOFTWARE
LYS A:374 , ALA A:460 , GLU A:461 , GLY A:462 , ARG A:463 , LEU A:487 , 1OT A:1004
BINDING SITE FOR RESIDUE CO3 A 1002
03
AC3
SOFTWARE
ASP A:379 , LYS A:386 , ASP A:459 , GLU A:461 , ZN A:1001 , 1OT A:1004
BINDING SITE FOR RESIDUE ZN A 1003
04
AC4
SOFTWARE
LYS A:374 , ASP A:379 , LYS A:386 , MET A:392 , MET A:396 , PHE A:398 , ASP A:399 , ASP A:459 , GLU A:461 , THR A:486 , LEU A:487 , LEU A:492 , ALA A:577 , ZN A:1001 , CO3 A:1002 , ZN A:1003 , HOH A:1226
BINDING SITE FOR RESIDUE 1OT A 1004
05
AC5
SOFTWARE
SER A:435 , LYS A:436 , SER B:435 , LYS B:436 , SER C:435 , LYS C:436
BINDING SITE FOR RESIDUE SO4 A 1005
06
AC6
SOFTWARE
ILE A:101 , GLU A:102 , TYR A:103 , ASN A:104
BINDING SITE FOR RESIDUE SO4 A 1006
07
AC7
SOFTWARE
PHE A:156 , ASN A:161 , LYS A:164 , TYR D:176 , MET D:177 , SER D:184
BINDING SITE FOR RESIDUE SO4 A 1007
08
AC8
SOFTWARE
GLU A:125 , GLY A:126 , LEU A:219 , SER A:220
BINDING SITE FOR RESIDUE SO4 A 1008
09
AC9
SOFTWARE
TYR A:103 , ASN A:104 , HIS A:108 , PHE A:289 , LYS A:320 , TYR A:411
BINDING SITE FOR RESIDUE 1PE A 1009
10
BC1
SOFTWARE
TYR A:103 , GLU A:316 , LYS A:320
BINDING SITE FOR RESIDUE 1PE A 1010
11
BC2
SOFTWARE
LYS B:374 , ASP B:379 , ASP B:399 , GLU B:461 , ZN B:1003 , 1OT B:1004
BINDING SITE FOR RESIDUE ZN B 1001
12
BC3
SOFTWARE
LYS B:374 , ALA B:460 , GLU B:461 , GLY B:462 , ARG B:463 , LEU B:487 , 1OT B:1004 , HOH B:1137
BINDING SITE FOR RESIDUE CO3 B 1002
13
BC4
SOFTWARE
ASP B:379 , ASP B:459 , GLU B:461 , ZN B:1001 , 1OT B:1004
BINDING SITE FOR RESIDUE ZN B 1003
14
BC5
SOFTWARE
LYS B:374 , ASP B:379 , LYS B:386 , MET B:392 , MET B:396 , ASP B:399 , ASP B:459 , GLU B:461 , THR B:486 , LEU B:487 , LEU B:492 , ZN B:1001 , CO3 B:1002 , ZN B:1003 , HOH B:1128
BINDING SITE FOR RESIDUE 1OT B 1004
15
BC6
SOFTWARE
GLY B:126 , LEU B:219 , SER B:220
BINDING SITE FOR RESIDUE SO4 B 1005
16
BC7
SOFTWARE
TYR B:103 , LYS B:320 , TYR B:411 , TYR H:103 , GLU H:316 , LYS H:320 , 2PE H:1006
BINDING SITE FOR RESIDUE 2PE B 1006
17
BC8
SOFTWARE
SER B:93 , LEU B:94 , ASP B:95 , PRO B:96 , TYR B:304
BINDING SITE FOR RESIDUE 2PE B 1007
18
BC9
SOFTWARE
LYS C:374 , ASP C:379 , ASP C:399 , GLU C:461 , ZN C:1003 , 1OT C:1004
BINDING SITE FOR RESIDUE ZN C 1001
19
CC1
SOFTWARE
LYS C:374 , ALA C:460 , GLU C:461 , GLY C:462 , ARG C:463 , LEU C:487 , 1OT C:1004
BINDING SITE FOR RESIDUE CO3 C 1002
20
CC2
SOFTWARE
ASP C:379 , ASP C:459 , GLU C:461 , ZN C:1001 , 1OT C:1004
BINDING SITE FOR RESIDUE ZN C 1003
21
CC3
SOFTWARE
LYS C:374 , ASP C:379 , LYS C:386 , MET C:392 , MET C:396 , ASP C:399 , ASP C:459 , GLU C:461 , THR C:486 , LEU C:487 , LEU C:492 , ZN C:1001 , CO3 C:1002 , ZN C:1003 , 1PE C:1008 , HOH C:1134
BINDING SITE FOR RESIDUE 1OT C 1004
22
CC4
SOFTWARE
TYR C:103 , ASN C:104 , 1PE C:1006
BINDING SITE FOR RESIDUE SO4 C 1005
23
CC5
SOFTWARE
TYR C:103 , GLU C:316 , LYS C:320 , SO4 C:1005
BINDING SITE FOR RESIDUE 1PE C 1006
24
CC6
SOFTWARE
TYR C:103 , ASN C:104 , HIS C:108 , TYR C:411 , HOH C:1261
BINDING SITE FOR RESIDUE 1PE C 1007
25
CC7
SOFTWARE
ASN C:457 , ASP C:459 , 1OT C:1004 , HOH C:1216
BINDING SITE FOR RESIDUE 1PE C 1008
26
CC8
SOFTWARE
GLN C:90 , SER C:93 , LEU C:94 , ASP C:95 , THR C:97 , HOH C:1146
BINDING SITE FOR RESIDUE 2PE C 1009
27
CC9
SOFTWARE
LYS D:374 , ASP D:379 , ASP D:399 , GLU D:461 , ZN D:1003 , 1OT D:1004
BINDING SITE FOR RESIDUE ZN D 1001
28
DC1
SOFTWARE
LYS D:374 , ALA D:460 , GLU D:461 , GLY D:462 , ARG D:463 , LEU D:487 , 1OT D:1004 , HOH D:1179
BINDING SITE FOR RESIDUE CO3 D 1002
29
DC2
SOFTWARE
ASP D:379 , ASP D:459 , GLU D:461 , ZN D:1001 , 1OT D:1004
BINDING SITE FOR RESIDUE ZN D 1003
30
DC3
SOFTWARE
LYS D:374 , ASP D:379 , LYS D:386 , PHE D:398 , ASP D:399 , ASP D:459 , GLU D:461 , THR D:486 , LEU D:487 , LEU D:492 , ALA D:577 , ZN D:1001 , CO3 D:1002 , ZN D:1003 , HOH D:1179 , HOH D:1248
BINDING SITE FOR RESIDUE 1OT D 1004
31
DC4
SOFTWARE
SER D:435 , LYS D:436 , SER E:435 , LYS E:436 , SER F:435 , LYS F:436
BINDING SITE FOR RESIDUE SO4 D 1005
32
DC5
SOFTWARE
TYR D:103 , ASN D:104 , 2PE D:1010
BINDING SITE FOR RESIDUE SO4 D 1006
33
DC6
SOFTWARE
TYR D:103 , ASN D:104 , HIS D:108 , LYS D:320 , TYR D:411
BINDING SITE FOR RESIDUE 1PE D 1007
34
DC7
SOFTWARE
LYS D:111 , GLU L:282 , ARG L:285
BINDING SITE FOR RESIDUE 1PE D 1008
35
DC8
SOFTWARE
ASN D:449 , LYS D:451 , ARG D:534 , ASP D:543 , GLU D:564 , GLN D:567
BINDING SITE FOR RESIDUE 1PE D 1009
36
DC9
SOFTWARE
TYR D:103 , ASN D:104 , GLU D:316 , GLN D:319 , LYS D:320 , SO4 D:1006
BINDING SITE FOR RESIDUE 2PE D 1010
37
EC1
SOFTWARE
ALA D:85 , SER D:86 , GLU D:87 , VAL D:88 , THR D:97 , ASN D:312
BINDING SITE FOR RESIDUE 2PE D 1011
38
EC2
SOFTWARE
SER D:93 , LEU D:94 , ASP D:95 , THR D:97
BINDING SITE FOR RESIDUE 2PE D 1012
39
EC3
SOFTWARE
LYS E:374 , ASP E:379 , ASP E:399 , GLU E:461 , ZN E:1003 , 1OT E:1004
BINDING SITE FOR RESIDUE ZN E 1001
40
EC4
SOFTWARE
LYS E:374 , ALA E:460 , GLU E:461 , GLY E:462 , ARG E:463 , LEU E:487 , 1OT E:1004 , HOH E:1123
BINDING SITE FOR RESIDUE CO3 E 1002
41
EC5
SOFTWARE
ASP E:379 , ASP E:459 , GLU E:461 , ZN E:1001 , 1OT E:1004
BINDING SITE FOR RESIDUE ZN E 1003
42
EC6
SOFTWARE
LYS E:374 , ASP E:379 , LYS E:386 , MET E:392 , PHE E:398 , ASP E:399 , ASP E:459 , GLU E:461 , THR E:486 , LEU E:487 , LEU E:492 , ZN E:1001 , CO3 E:1002 , ZN E:1003 , HOH E:1123 , HOH E:1184
BINDING SITE FOR RESIDUE 1OT E 1004
43
EC7
SOFTWARE
GLU E:102 , TYR E:103 , ASN E:104 , HOH E:1202
BINDING SITE FOR RESIDUE SO4 E 1005
44
EC8
SOFTWARE
PHE C:156 , LYS C:164 , TYR E:176 , MET E:177 , PHE E:178 , SER E:184
BINDING SITE FOR RESIDUE SO4 E 1006
45
EC9
SOFTWARE
TYR E:103 , GLU E:316 , LYS E:320
BINDING SITE FOR RESIDUE 1PE E 1007
46
FC1
SOFTWARE
TYR E:103 , PHE E:289 , TYR E:411 , HOH E:1189
BINDING SITE FOR RESIDUE 1PE E 1008
47
FC2
SOFTWARE
ASN E:449 , LYS E:451 , ASP E:543 , SER F:254
BINDING SITE FOR RESIDUE 1PE E 1009
48
FC3
SOFTWARE
SER E:93 , ASP E:95 , PRO E:96 , THR E:97 , TYR E:304
BINDING SITE FOR RESIDUE 2PE E 1010
49
FC4
SOFTWARE
LYS F:374 , ASP F:379 , ASP F:399 , GLU F:461 , ZN F:1003 , 1OT F:1004
BINDING SITE FOR RESIDUE ZN F 1001
50
FC5
SOFTWARE
LYS F:374 , ALA F:460 , GLU F:461 , GLY F:462 , ARG F:463 , LEU F:487 , 1OT F:1004
BINDING SITE FOR RESIDUE CO3 F 1002
51
FC6
SOFTWARE
ASP F:379 , LYS F:386 , ASP F:459 , GLU F:461 , ZN F:1001 , 1OT F:1004
BINDING SITE FOR RESIDUE ZN F 1003
52
FC7
SOFTWARE
LYS F:374 , ASP F:379 , LYS F:386 , MET F:392 , PHE F:398 , ASP F:399 , ASP F:459 , GLU F:461 , THR F:486 , LEU F:487 , LEU F:492 , ZN F:1001 , CO3 F:1002 , ZN F:1003 , HOH F:1168
BINDING SITE FOR RESIDUE 1OT F 1004
53
FC8
SOFTWARE
GLU F:102 , TYR F:103 , ASN F:104 , 1PE F:1007
BINDING SITE FOR RESIDUE SO4 F 1005
54
FC9
SOFTWARE
TYR F:103 , HIS F:108 , PHE F:289 , LYS F:320 , TYR F:411
BINDING SITE FOR RESIDUE 1PE F 1006
55
GC1
SOFTWARE
TYR F:103 , GLU F:316 , LYS F:320 , SO4 F:1005
BINDING SITE FOR RESIDUE 1PE F 1007
56
GC2
SOFTWARE
SER D:254 , ASN F:449 , LYS F:451 , ASP F:543 , GLN F:567
BINDING SITE FOR RESIDUE 1PE F 1008
57
GC3
SOFTWARE
LEU F:514 , SER F:517 , VAL F:524
BINDING SITE FOR RESIDUE 1PE F 1009
58
GC4
SOFTWARE
SER F:93 , LEU F:94 , ASP F:95 , PRO F:96 , TYR F:304
BINDING SITE FOR RESIDUE 2PE F 1010
59
HC2
SOFTWARE
LYS A:111 , GLY G:126 , LEU G:219 , SER G:220 , HOH G:1233 , LYS J:164
BINDING SITE FOR RESIDUE SO4 G 1007
60
HC4
SOFTWARE
TYR A:115 , ASN A:122 , TYR A:270 , TYR G:115 , ASN G:122 , GLU G:124 , TYR G:270 , 1PE G:1010
BINDING SITE FOR RESIDUE 1PE G 1009
61
HC5
SOFTWARE
ASN A:122 , ASN G:122 , 1PE G:1009
BINDING SITE FOR RESIDUE 1PE G 1010
62
IC3
SOFTWARE
TYR B:103 , GLU B:316 , LYS B:320 , 2PE B:1006 , TYR H:103 , ASN H:104 , HIS H:108 , LYS H:320 , TYR H:411
BINDING SITE FOR RESIDUE 2PE H 1006
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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Sorry, no Info available
[
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]
PROSITE Patterns/Profiles
(, 0)
Info
All PROSITE Patterns/Profiles
;
View:
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Label:
End label:
Sorry, no Info available
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(0, 0)
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All SCOP Domains
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[
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]
CATH Domains
(0, 0)
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all CATH domains
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Sorry, no Info available
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Chain C
Chain D
Chain E
Chain F
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
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RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
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pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
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Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
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Asym.Unit (1.9 MB)
Header - Asym.Unit
Biol.Unit 1 (949 KB)
Header - Biol.Unit 1
Biol.Unit 2 (954 KB)
Header - Biol.Unit 2
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