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4K3L
Asym. Unit
Info
Asym.Unit (139 KB)
Biol.Unit 1 (133 KB)
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(1)
Title
:
E. COLI SLIDING CLAMP IN COMPLEX WITH ACLF DIPEPTIDE
Authors
:
Z. Yin, A. J. Oakley
Date
:
10 Apr 13 (Deposition) - 01 May 13 (Release) - 15 Jan 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.50
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
E. Coli Sliding Clamp, Dnan, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Z. Yin, M. J. Kelso, J. L. Beck, A. J. Oakley
Structural And Thermodynamic Dissection Of Linear Motif Recognition By The E. Coli Sliding Clamp
J. Med. Chem. V. 56 8665 2013
[
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Hetero Components
(8, 26)
Info
All Hetero Components
1a: ACETYL GROUP (ACEa)
1b: ACETYL GROUP (ACEb)
2a: CALCIUM ION (CAa)
2b: CALCIUM ION (CAb)
2c: CALCIUM ION (CAc)
2d: CALCIUM ION (CAd)
2e: CALCIUM ION (CAe)
2f: CALCIUM ION (CAf)
2g: CALCIUM ION (CAg)
2h: CALCIUM ION (CAh)
2i: CALCIUM ION (CAi)
2j: CALCIUM ION (CAj)
2k: CALCIUM ION (CAk)
2l: CALCIUM ION (CAl)
3a: CHLORIDE ION (CLa)
4a: 1,2-ETHANEDIOL (EDOa)
5a: LEUCINE (LEUa)
5b: LEUCINE (LEUb)
6a: DI(HYDROXYETHYL)ETHER (PEGa)
6b: DI(HYDROXYETHYL)ETHER (PEGb)
6c: DI(HYDROXYETHYL)ETHER (PEGc)
6d: DI(HYDROXYETHYL)ETHER (PEGd)
6e: DI(HYDROXYETHYL)ETHER (PEGe)
7a: TRIETHYLENE GLYCOL (PGEa)
8a: PHENYLALANINE (PHEa)
8b: PHENYLALANINE (PHEb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACE
2
Mod. Amino Acid
ACETYL GROUP
2
CA
12
Ligand/Ion
CALCIUM ION
3
CL
1
Ligand/Ion
CHLORIDE ION
4
EDO
1
Ligand/Ion
1,2-ETHANEDIOL
5
LEU
2
Mod. Amino Acid
LEUCINE
6
PEG
5
Ligand/Ion
DI(HYDROXYETHYL)ETHER
7
PGE
1
Ligand/Ion
TRIETHYLENE GLYCOL
8
PHE
2
Mod. Amino Acid
PHENYLALANINE
[
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]
Sites
(19, 19)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLU A:6 , HIS A:9 , GLN A:61 , HOH A:560
BINDING SITE FOR RESIDUE CA A 403
02
AC2
SOFTWARE
SER A:181 , GLN A:355 , SER A:356
BINDING SITE FOR RESIDUE CA A 404
03
AC3
SOFTWARE
ASN A:275 , ARG A:282 , ASN A:295 , ASN A:296 , PRO A:297 , HOH A:535
BINDING SITE FOR RESIDUE PEG A 405
04
AC4
SOFTWARE
ASP A:121 , TRP A:122 , ARG A:224 , HOH A:828
BINDING SITE FOR RESIDUE PEG A 406
05
AC5
SOFTWARE
HOH A:618 , HOH A:859 , MET B:1 , LYS B:2 , GLU B:64
BINDING SITE FOR RESIDUE CA A 408
06
AC6
SOFTWARE
HOH A:534 , GLU B:163 , GLU B:166 , HOH B:588 , HOH B:617 , HOH B:792
BINDING SITE FOR RESIDUE CA B 403
07
AC7
SOFTWARE
PRO B:249 , PRO B:252 , MET B:339 , LEU B:340 , THR B:341 , SER B:346
BINDING SITE FOR RESIDUE CA B 404
08
AC8
SOFTWARE
GLY B:46 , GLU B:202
BINDING SITE FOR RESIDUE CA B 406
09
AC9
SOFTWARE
ASP B:121 , TRP B:122 , ARG B:224 , HOH B:651 , HOH B:836
BINDING SITE FOR RESIDUE PEG B 407
10
BC1
SOFTWARE
ALA B:133 , HOH B:868
BINDING SITE FOR RESIDUE PEG B 408
11
BC2
SOFTWARE
GLN B:132 , MET B:206 , ASP B:208 , GLY B:210 , ASP B:211 , ASN B:212 , VAL B:227 , PHE B:230 , HOH B:615 , HOH B:805 , HOH B:806
BINDING SITE FOR RESIDUE PGE B 409
12
BC3
SOFTWARE
SER B:187 , LEU B:188 , PRO B:189 , HOH B:786 , HOH B:818
BINDING SITE FOR RESIDUE PEG B 410
13
BC4
SOFTWARE
PRO A:65 , VAL B:126 , GLU B:127 , HOH B:616 , HOH B:790
BINDING SITE FOR RESIDUE CA B 412
14
BC5
SOFTWARE
PRO B:83 , HOH B:656
BINDING SITE FOR RESIDUE CA B 413
15
BC6
SOFTWARE
GLU B:161 , GLU B:163 , ARG B:168 , ASP B:243 , TYR B:244 , ARG B:245 , HOH B:648
BINDING SITE FOR RESIDUE EDO B 414
16
BC7
SOFTWARE
GLU B:95 , THR B:110 , HOH B:688 , HOH B:817 , HOH B:822
BINDING SITE FOR RESIDUE CL B 416
17
BC8
SOFTWARE
HOH A:724 , HOH A:758 , HOH B:685 , HOH B:691 , HOH B:767 , HOH B:899
BINDING SITE FOR RESIDUE CA B 417
18
BC9
SOFTWARE
ARG A:152 , THR A:172 , GLY A:174 , ARG A:176 , PRO A:242 , MET A:362 , HOH A:563 , HOH A:611 , HOH A:652 , ASN B:251
BINDING SITE FOR LINKED RESIDUES A 400 to 402
19
CC1
SOFTWARE
THR B:172 , GLY B:174 , HIS B:175 , ARG B:176 , PRO B:242 , MET B:362 , HOH B:599 , HOH B:759
BINDING SITE FOR LINKED RESIDUES B 400 to 402
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
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End label:
Sorry, no Info available
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 6)
Info
All SCOP Domains
1a: SCOP_d4k3la1 (A:1-122)
1b: SCOP_d4k3la2 (A:123-244)
1c: SCOP_d4k3la3 (A:245-365)
1d: SCOP_d4k3lb1 (B:1-122)
1e: SCOP_d4k3lb2 (B:123-244)
1f: SCOP_d4k3lb3 (B:245-366)
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Classes
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Families
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(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
DNA clamp
(88)
Superfamily
:
DNA clamp
(88)
Family
:
DNA polymerase III, beta subunit
(31)
Protein domain
:
DNA polymerase III, beta subunit
(31)
Escherichia coli [TaxId: 562]
(30)
1a
d4k3la1
A:1-122
1b
d4k3la2
A:123-244
1c
d4k3la3
A:245-365
1d
d4k3lb1
B:1-122
1e
d4k3lb2
B:123-244
1f
d4k3lb3
B:245-366
[
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]
CATH Domains
(0, 0)
Info
all CATH domains
View:
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Label:
Sorry, no Info available
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
[
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Atom Selection
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Protein
Nucleic
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Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Asymmetric Unit 1
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select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
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Asym.Unit (139 KB)
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Header - Biol.Unit 1
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