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4K2I
Asym. Unit
Info
Asym.Unit (161 KB)
Biol.Unit 1 (156 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF NTDA FROM BACILLUS SUBTILIS WITH BOUND COFACTOR PMP
Authors
:
K. E. Van Straaten, D. R. J. Palmer, D. A. R. Sanders
Date
:
09 Apr 13 (Deposition) - 16 Oct 13 (Release) - 01 Jan 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.23
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Sugar Aminotransferase, Aspertate Aminotransferase Fold, Homo-Dimer, Additional N-Terninal Domain, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
K. E. Van Straaten, J. B. Ko, R. Jagdhane, S. Anjum, D. R. Palmer, D. A. Sanders
The Structure Of Ntda, A Sugar Aminotransferase Involved In The Kanosamine Biosynthetic Pathway In Bacillus Subtilis, Reveals A New Subclass Of Aminotransferases.
J. Biol. Chem. V. 288 34121 2013
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Hetero Components
(4, 18)
Info
All Hetero Components
1a: ACETATE ION (ACTa)
1b: ACETATE ION (ACTb)
1c: ACETATE ION (ACTc)
1d: ACETATE ION (ACTd)
2a: CHLORIDE ION (CLa)
2b: CHLORIDE ION (CLb)
2c: CHLORIDE ION (CLc)
2d: CHLORIDE ION (CLd)
3a: 1,2-ETHANEDIOL (EDOa)
3b: 1,2-ETHANEDIOL (EDOb)
3c: 1,2-ETHANEDIOL (EDOc)
3d: 1,2-ETHANEDIOL (EDOd)
3e: 1,2-ETHANEDIOL (EDOe)
3f: 1,2-ETHANEDIOL (EDOf)
3g: 1,2-ETHANEDIOL (EDOg)
3h: 1,2-ETHANEDIOL (EDOh)
4a: 4'-DEOXY-4'-AMINOPYRIDOXAL-5'-PHOS... (PMPa)
4b: 4'-DEOXY-4'-AMINOPYRIDOXAL-5'-PHOS... (PMPb)
View:
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Label:
No.
Name
Count
Type
Full Name
1
ACT
4
Ligand/Ion
ACETATE ION
2
CL
4
Ligand/Ion
CHLORIDE ION
3
EDO
8
Ligand/Ion
1,2-ETHANEDIOL
4
PMP
2
Ligand/Ion
4'-DEOXY-4'-AMINOPYRIDOXAL-5'-PHOSPHATE
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Sites
(18, 18)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
SER A:124 , GLY A:125 , THR A:126 , SER A:150 , PHE A:151 , ALA A:153 , ASP A:222 , CYS A:224 , GLN A:225 , SER A:242 , ASN A:244 , LYS A:247 , ALA A:255 , TYR A:379 , ACT A:509 , HOH A:620 , HOH A:622 , HOH A:686 , HOH A:770 , HOH A:856 , ASN B:292
BINDING SITE FOR RESIDUE PMP A 501
02
AC2
SOFTWARE
TYR A:246 , ARG A:317 , HIS A:349 , LEU A:415 , ACT A:508
BINDING SITE FOR RESIDUE ACT A 502
03
AC3
SOFTWARE
ASP A:376 , VAL A:377 , TYR A:378 , LYS B:282 , ASN B:283
BINDING SITE FOR RESIDUE EDO A 503
04
AC4
SOFTWARE
VAL A:119 , HOH A:786
BINDING SITE FOR RESIDUE CL A 504
05
AC5
SOFTWARE
ASN A:149 , PHE A:175 , TYR A:199 , LEU A:382 , HIS A:407 , VAL A:410 , HOH A:607
BINDING SITE FOR RESIDUE EDO A 505
06
AC6
SOFTWARE
GLN A:173 , PHE A:175 , LEU A:339 , PRO A:340 , PRO A:352 , LYS A:354 , HOH A:681
BINDING SITE FOR RESIDUE EDO A 506
07
AC7
SOFTWARE
ILE A:381 , LEU A:382 , MET A:385 , HIS A:407
BINDING SITE FOR RESIDUE CL A 507
08
AC8
SOFTWARE
TYR A:246 , LYS A:247 , HIS A:349 , TYR A:378 , ACT A:502
BINDING SITE FOR RESIDUE ACT A 508
09
AC9
SOFTWARE
TYR A:246 , PMP A:501 , HOH A:622 , HOH A:856 , HOH A:875 , TYR B:274
BINDING SITE FOR RESIDUE ACT A 509
10
BC1
SOFTWARE
GLY A:95 , LYS A:96 , PHE A:97 , THR A:98 , SER A:99 , PRO B:245 , TYR B:246
BINDING SITE FOR RESIDUE EDO A 510
11
BC2
SOFTWARE
ASN A:292 , HOH A:647 , SER B:124 , GLY B:125 , THR B:126 , SER B:150 , ALA B:153 , ASP B:222 , CYS B:224 , GLN B:225 , SER B:242 , ASN B:244 , LYS B:247 , ALA B:255 , TYR B:379 , HOH B:632 , HOH B:710 , HOH B:744 , HOH B:805
BINDING SITE FOR RESIDUE PMP B 501
12
BC3
SOFTWARE
GLN B:173 , PHE B:175 , GLU B:338 , PRO B:340 , PRO B:352 , HOH B:704 , HOH B:875
BINDING SITE FOR RESIDUE EDO B 502
13
BC4
SOFTWARE
TYR B:246 , ARG B:317 , HIS B:349 , LEU B:415
BINDING SITE FOR RESIDUE ACT B 503
14
BC5
SOFTWARE
ASN B:149 , PHE B:175 , TYR B:199 , LEU B:382 , HIS B:407 , VAL B:410 , HOH B:605
BINDING SITE FOR RESIDUE EDO B 504
15
BC6
SOFTWARE
LYS A:282 , ASN A:283 , ASP B:376 , VAL B:377 , TYR B:378
BINDING SITE FOR RESIDUE EDO B 505
16
BC7
SOFTWARE
TYR B:118 , VAL B:119 , HOH B:837
BINDING SITE FOR RESIDUE CL B 506
17
BC8
SOFTWARE
LEU B:382 , MET B:385 , HIS B:407
BINDING SITE FOR RESIDUE CL B 507
18
BC9
SOFTWARE
PRO A:245 , TYR A:246 , GLY B:95 , LYS B:96 , PHE B:97 , THR B:98 , SER B:99
BINDING SITE FOR RESIDUE EDO B 508
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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Exons
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Asymmetric Unit 1
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