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4K1F
Asym. Unit
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Asym.Unit (169 KB)
Biol.Unit 1 (324 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF REDUCED TRYPAREDOXIN PEROXIDASE FROM LEISHMANIA MAJOR AT 2.34 A RESOLUTION
Authors
:
A. Ilari, A. Fiorillo, F. Di Chiaro
Date
:
05 Apr 13 (Deposition) - 09 Apr 14 (Release) - 10 Jun 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.34
Chains
:
Asym. Unit : A,B,C,D,E
Biol. Unit 1: A,B,C,D,E (2x)
Keywords
:
Thioredoxin Fold, Peroxidase, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Brindisi, S. Brogi, N. Relitti, A. Vallone, S. Butini, S. Gemma, E. Novellino, G. Colotti, G. Angiulli, F. Di Chiaro, A. Fiorillo, A. Ilari, G. Campiani
Structure-Based Discovery Of The First Non-Covalent Inhibitors Of Leishmania Major Tryparedoxin Peroxidase By High Throughput Docking
Sci Rep V. 5 9705 2015
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Hetero Components
(4, 10)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
1b: CHLORIDE ION (CLb)
1c: CHLORIDE ION (CLc)
1d: CHLORIDE ION (CLd)
2a: 3,6,9,12,15,18,21-HEPTAOXATRICOSAN... (PE8a)
3a: DI(HYDROXYETHYL)ETHER (PEGa)
3b: DI(HYDROXYETHYL)ETHER (PEGb)
3c: DI(HYDROXYETHYL)ETHER (PEGc)
3d: DI(HYDROXYETHYL)ETHER (PEGd)
4a: TRIETHYLENE GLYCOL (PGEa)
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No.
Name
Count
Type
Full Name
1
CL
4
Ligand/Ion
CHLORIDE ION
2
PE8
1
Ligand/Ion
3,6,9,12,15,18,21-HEPTAOXATRICOSANE-1,23-DIOL
3
PEG
4
Ligand/Ion
DI(HYDROXYETHYL)ETHER
4
PGE
1
Ligand/Ion
TRIETHYLENE GLYCOL
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Sites
(8, 8)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
TYR A:82 , GLN A:123 , MET A:147
BINDING SITE FOR RESIDUE PGE A 201
2
AC2
SOFTWARE
LYS A:168 , HIS A:169
BINDING SITE FOR RESIDUE CL A 202
3
AC3
SOFTWARE
PHE B:165 , HIS B:169 , GLY B:180 , PRO B:182 , GLY B:194 , TYR B:195 , GLN B:199 , HOH B:487 , HOH B:488
BINDING SITE FOR RESIDUE PE8 B 301
4
AC4
SOFTWARE
MET C:147
BINDING SITE FOR RESIDUE PEG C 201
5
AC5
SOFTWARE
LYS C:168 , HIS C:169 , LYS C:179
BINDING SITE FOR RESIDUE CL C 202
6
AC6
SOFTWARE
TYR D:82 , MET E:147
BINDING SITE FOR RESIDUE PEG D 201
7
AC7
SOFTWARE
LYS D:168 , HIS D:169
BINDING SITE FOR RESIDUE CL D 202
8
AC8
SOFTWARE
TYR E:82
BINDING SITE FOR RESIDUE PEG E 201
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 5)
Info
All SCOP Domains
1a: SCOP_d4k1fa_ (A:)
1b: SCOP_d4k1fb_ (B:)
1c: SCOP_d4k1fc_ (C:)
1d: SCOP_d4k1fd_ (D:)
1e: SCOP_d4k1fe_ (E:)
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Protein Domains
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Organisms
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Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Thioredoxin fold
(994)
Superfamily
:
Thioredoxin-like
(992)
Family
:
Glutathione peroxidase-like
(136)
Protein domain
:
automated matches
(46)
Leishmania major [TaxId: 5664]
(2)
1a
d4k1fa_
A:
1b
d4k1fb_
B:
1c
d4k1fc_
C:
1d
d4k1fd_
D:
1e
d4k1fe_
E:
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CATH Domains
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Pfam Domains
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Asymmetric Unit 1
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Asym.Unit (169 KB)
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