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4K0A
Asym. Unit
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Asym.Unit (199 KB)
Biol.Unit 1 (191 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF CD4-MIMETIC MINIPROTEIN M48U7 IN COMPLEX WITH HIV-1 YU2 GP120
Authors
:
P. Acharya, P. D. Kwong
Date
:
03 Apr 13 (Deposition) - 12 Jun 13 (Release) - 10 Jul 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.13
Chains
:
Asym. Unit : A,R
Biol. Unit 1: A,R (1x)
Keywords
:
Hiv-1 Attachment Glycoprotein Gp120, Hiv-1 Envelope, Viral Protein- Inhibitor Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
P. Acharya, T. S. Luongo, M. K. Louder, K. Mckee, Y. Yang, Y. Do Kwon, J. R. Mascola, P. Kessler, L. Martin, P. D. Kwong
Structural Basis For Highly Effective Hiv-1 Neutralization By Cd4-Mimetic Miniproteins Revealed By 1. 5 A Cocrystal Structure Of Gp120 And M48U1.
Structure V. 21 1018 2013
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Hetero Components
(7, 17)
Info
All Hetero Components
1a: O-(5-HYDROXYPENTYL)-L-TYROSINE (1OPa)
2a: D-PROLINE (DPRa)
3a: CITRATE ANION (FLCa)
4a: ISOPROPYL ALCOHOL (IPAa)
4b: ISOPROPYL ALCOHOL (IPAb)
4c: ISOPROPYL ALCOHOL (IPAc)
4d: ISOPROPYL ALCOHOL (IPAd)
5a: BETA-MERCAPTOPROPIONIC ACID (MPTa)
6a: N-ACETYL-D-GLUCOSAMINE (NAGa)
6b: N-ACETYL-D-GLUCOSAMINE (NAGb)
6c: N-ACETYL-D-GLUCOSAMINE (NAGc)
6d: N-ACETYL-D-GLUCOSAMINE (NAGd)
6e: N-ACETYL-D-GLUCOSAMINE (NAGe)
6f: N-ACETYL-D-GLUCOSAMINE (NAGf)
6g: N-ACETYL-D-GLUCOSAMINE (NAGg)
6h: N-ACETYL-D-GLUCOSAMINE (NAGh)
7a: AMINO GROUP (NH2a)
View:
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Label:
No.
Name
Count
Type
Full Name
1
1OP
1
Mod. Amino Acid
O-(5-HYDROXYPENTYL)-L-TYROSINE
2
DPR
1
Mod. Amino Acid
D-PROLINE
3
FLC
1
Ligand/Ion
CITRATE ANION
4
IPA
4
Ligand/Ion
ISOPROPYL ALCOHOL
5
MPT
1
Mod. Amino Acid
BETA-MERCAPTOPROPIONIC ACID
6
NAG
8
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
7
NH2
1
Mod. Amino Acid
AMINO GROUP
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Sites
(14, 14)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
VAL A:44 , TRP A:45 , GLU A:91
BINDING SITE FOR RESIDUE IPA A 509
02
AC2
SOFTWARE
GLN A:246
BINDING SITE FOR RESIDUE IPA A 510
03
AC3
SOFTWARE
ALA A:73 , VAL A:120 , ILE A:423 , LYS A:432 , MET A:434
BINDING SITE FOR RESIDUE IPA A 511
04
AC4
SOFTWARE
TRP A:96 , LYS A:97 , ASN A:98 , VAL A:101 , ARG A:480
BINDING SITE FOR RESIDUE IPA A 512
05
AC5
SOFTWARE
SER A:110 , GLN A:114 , ARG A:419 , LYS A:421 , GLN A:422 , ILE A:423 , HOH A:711
BINDING SITE FOR RESIDUE FLC A 513
06
AC6
SOFTWARE
ASN A:234 , THR A:236 , SER A:274 , HOH A:683
BINDING SITE FOR MONO-SACCHARIDE NAG A 502 BOUND TO ASN A 234
07
AC7
SOFTWARE
LYS A:231 , ASN A:241
BINDING SITE FOR MONO-SACCHARIDE NAG A 503 BOUND TO ASN A 241
08
AC8
SOFTWARE
GLU A:211 , LEU A:261 , ASN A:262 , CYS A:445 , SER A:446 , SER A:447 , HOH A:607 , HOH A:611 , HOH A:649
BINDING SITE FOR MONO-SACCHARIDE NAG A 504 BOUND TO ASN A 262
09
AC9
SOFTWARE
LYS A:46 , ASN A:92 , ASN A:276 , THR A:278 , ASN A:279 , HOH A:682
BINDING SITE FOR MONO-SACCHARIDE NAG A 501 BOUND TO ASN A 276
10
BC1
SOFTWARE
GLU A:268 , GLU A:269 , ILE A:270 , ASN A:289 , GLU A:290 , LYS A:348 , GLU A:351 , HOH A:669 , HOH A:701
BINDING SITE FOR MONO-SACCHARIDE NAG A 505 BOUND TO ASN A 289
11
BC2
SOFTWARE
ASN A:295 , ASN A:332 , LEU A:333 , ASN A:413 , ARG A:444 , HOH A:742
BINDING SITE FOR MONO-SACCHARIDE NAG A 506 BOUND TO ASN A 295
12
BC3
SOFTWARE
ASN A:386 , THR A:388 , HOH A:736
BINDING SITE FOR MONO-SACCHARIDE NAG A 507 BOUND TO ASN A 386
13
BC4
SOFTWARE
SER A:291 , ASN A:448 , HOH A:615 , HOH A:651
BINDING SITE FOR MONO-SACCHARIDE NAG A 508 BOUND TO ASN A 448
14
BC5
SOFTWARE
THR A:63 , LYS A:207 , VAL A:255 , THR A:257 , ALA A:281 , SER A:365 , GLY A:366 , GLY A:367 , ASP A:368 , GLU A:370 , SER A:375 , PHE A:382 , TYR A:384 , ASN A:425 , MET A:426 , TRP A:427 , GLU A:429 , ARG A:440 , GLY A:473 , HOH A:605 , HOH A:614 , HOH A:643 , HOH A:681 , HOH R:101 , HOH R:102 , HOH R:103 , HOH R:104
BINDING SITE FOR CHAIN R OF CD4-MIMETIC MINIPROTEIN M48U7
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
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Sorry, no Info available
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
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CATH Domains
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Pfam Domains
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Asymmetric Unit 1
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Asym.Unit (199 KB)
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